Wall clock time and date at job start Tue Mar 31 2020 11:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 110.26878 * 2 1 4 4 O 1.21295 * 119.99783 * 232.47700 * 3 2 1 5 5 N 1.34770 * 120.00379 * 52.48276 * 3 2 1 6 6 C 1.37096 * 120.00196 * 185.40064 * 5 3 2 7 7 H 1.08009 * 119.99680 * 208.01708 * 6 5 3 8 8 C 1.38948 * 120.00219 * 28.01982 * 6 5 3 9 9 N 1.31411 * 120.00379 * 30.71337 * 8 6 5 10 10 Si 1.86806 * 119.99914 * 210.72445 * 8 6 5 11 11 H 1.48500 * 109.47113 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47302 * 119.99702 * 10 8 6 13 13 H 1.48504 * 109.46924 * 239.99715 * 10 8 6 14 14 C 1.46498 * 120.00028 * 5.39010 * 5 3 2 15 15 C 1.53008 * 109.47021 * 110.02150 * 14 5 3 16 16 C 1.50698 * 109.47345 * 173.22524 * 15 14 5 17 17 O 1.20826 * 119.99734 * 0.02562 * 16 15 14 18 18 O 1.34228 * 120.00052 * 179.97438 * 16 15 14 19 19 C 1.54344 * 110.30316 * 237.92275 * 2 1 3 20 20 C 1.54345 * 102.39245 * 214.62713 * 19 2 1 21 21 C 1.51368 * 105.16774 * 26.34871 * 20 19 2 22 22 C 1.38504 * 130.39043 * 162.78990 * 21 20 19 23 23 C 1.38110 * 120.21352 * 180.02562 * 22 21 20 24 24 C 1.38254 * 119.93211 * 0.02562 * 23 22 21 25 25 C 1.38104 * 119.93461 * 359.97438 * 24 23 22 26 26 C 1.38210 * 109.76068 * 342.81333 * 21 20 19 27 27 H 1.08999 * 109.46869 * 84.57009 * 1 2 3 28 28 H 1.08996 * 109.47169 * 204.57177 * 1 2 3 29 29 H 1.09001 * 109.46958 * 324.57218 * 1 2 3 30 30 H 0.96997 * 120.00280 * 184.96655 * 9 8 6 31 31 H 1.09001 * 109.48026 * 230.02325 * 14 5 3 32 32 H 1.09006 * 109.47272 * 350.02901 * 14 5 3 33 33 H 1.08997 * 109.46803 * 293.22743 * 15 14 5 34 34 H 1.08997 * 109.47107 * 53.22399 * 15 14 5 35 35 H 0.96697 * 117.00158 * 179.97438 * 18 16 15 36 36 H 1.09003 * 110.82085 * 332.85979 * 19 2 1 37 37 H 1.09003 * 110.82282 * 96.40530 * 19 2 1 38 38 H 1.09005 * 110.30100 * 145.26988 * 20 19 2 39 39 H 1.08997 * 110.30378 * 267.32152 * 20 19 2 40 40 H 1.08000 * 119.89315 * 0.03264 * 22 21 20 41 41 H 1.07993 * 120.02706 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.02352 * 179.97438 * 24 23 22 43 43 H 1.08005 * 119.88596 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4137 0.0000 4 8 2.8624 1.7609 -0.8331 5 7 1.6188 2.2921 0.9257 6 6 2.0075 3.6051 0.8597 7 1 2.0686 4.1962 1.7616 8 6 2.3229 4.1755 -0.3674 9 7 1.7255 3.7559 -1.4601 10 14 3.5964 5.5388 -0.4640 11 1 4.1176 5.8267 0.8964 12 1 4.7144 5.1104 -1.3424 13 1 2.9692 6.7634 -1.0228 14 6 0.7322 1.8440 2.0024 15 6 1.4914 1.8661 3.3307 16 6 0.5384 1.5666 4.4590 17 8 -0.6281 1.3565 4.2248 18 8 0.9858 1.5323 5.7241 19 6 2.0656 -0.7687 -1.2266 20 6 3.3439 -1.4310 -0.6702 21 6 3.0995 -1.5767 0.8165 22 6 3.7384 -2.3666 1.7579 23 6 3.3372 -2.3352 3.0791 24 6 2.2944 -1.5132 3.4640 25 6 1.6562 -0.7248 2.5267 26 6 2.0573 -0.7546 1.2016 27 1 -0.3633 0.0972 -1.0231 28 1 -0.3633 -0.9346 0.4273 29 1 -0.3633 0.8374 0.5957 30 1 1.9964 4.1024 -2.3246 31 1 -0.1288 2.5094 2.0649 32 1 0.3928 0.8291 1.7949 33 1 2.2795 1.1135 3.3112 34 1 1.9334 2.8512 3.4802 35 1 0.3372 1.3364 6.4140 36 1 1.3497 -1.5226 -1.5542 37 1 2.3066 -0.0829 -2.0387 38 1 3.4923 -2.4096 -1.1268 39 1 4.2096 -0.7942 -0.8521 40 1 4.5529 -3.0092 1.4579 41 1 3.8372 -2.9527 3.8105 42 1 1.9792 -1.4877 4.4967 43 1 0.8413 -0.0833 2.8282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593743260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:38 Heat of formation + Delta-G solvation = -48.718847 kcal Electronic energy + Delta-G solvation = -28692.184918 eV Core-core repulsion = 24897.319495 eV Total energy + Delta-G solvation = -3794.865422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93993 -39.92107 -37.98906 -36.19202 -35.56024 -34.60279 -32.64648 -31.30929 -30.48839 -29.20614 -28.38061 -25.23916 -24.91419 -23.64048 -22.32516 -21.37996 -20.85008 -20.37933 -18.64943 -17.96337 -17.12245 -16.55488 -16.14297 -15.55671 -15.11368 -14.92678 -14.73824 -14.54823 -14.31800 -13.89153 -13.62955 -13.31710 -12.88496 -12.72694 -12.59428 -12.35052 -12.26130 -11.89604 -11.66493 -11.47391 -11.42055 -11.32272 -11.19186 -10.86419 -10.70265 -10.60253 -10.54842 -10.48837 -10.34773 -10.24081 -10.08781 -9.72868 -8.97802 -8.55066 -8.39064 -7.88245 -7.08864 -6.15863 -3.75582 1.63051 1.63354 2.37117 3.19009 3.34502 3.45436 3.46124 3.98985 4.17201 4.37493 4.73326 4.96061 5.02490 5.16530 5.20278 5.22261 5.37256 5.39158 5.44253 5.46798 5.59793 5.70071 5.75858 5.82817 5.90311 5.98448 6.00645 6.08016 6.22321 6.25261 6.32533 6.36848 6.45930 6.51216 6.52929 6.60945 6.66983 6.72886 6.75247 6.87124 7.01912 7.25267 7.58123 8.02592 8.14980 8.99473 9.15746 9.65362 10.27629 10.91994 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.007251 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.469561 B = 3860.448257 C = 5349.547341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.039 4.039 3 C 0.480 3.520 4 O -0.524 6.524 5 N -0.444 5.444 6 C -0.359 4.359 7 H 0.084 0.916 8 C 0.078 3.922 9 N -0.805 5.805 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.289 1.289 14 C 0.085 3.915 15 C -0.144 4.144 16 C 0.483 3.517 17 O -0.518 6.518 18 O -0.519 6.519 19 C -0.097 4.097 20 C -0.079 4.079 21 C -0.086 4.086 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.070 4.070 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.264 0.736 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -10.802 8.761 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.043 4.043 3 C 0.267 3.733 4 O -0.401 6.401 5 N -0.164 5.164 6 C -0.484 4.484 7 H 0.101 0.899 8 C -0.134 4.134 9 N -0.439 5.439 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.215 1.215 14 C -0.039 4.039 15 C -0.183 4.183 16 C 0.325 3.675 17 O -0.407 6.407 18 O -0.330 6.330 19 C -0.135 4.135 20 C -0.116 4.116 21 C -0.086 4.086 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.143 4.143 26 C -0.071 4.071 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.261 0.739 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.211 -10.508 7.738 13.052 hybrid contribution 0.173 0.568 0.593 0.839 sum -0.037 -9.940 8.330 12.969 Atomic orbital electron populations 1.22305 0.93414 1.02354 1.03193 1.20311 0.96166 0.95279 0.92547 1.19119 0.85183 0.84106 0.84897 1.90498 1.34026 1.77236 1.38329 1.43221 1.41941 1.07699 1.23565 1.19011 1.49593 0.86170 0.93629 0.89873 1.24806 0.96617 0.96960 0.95060 1.70035 1.33793 1.41336 0.98687 0.86432 0.82396 0.80624 0.78300 1.19705 1.20708 1.21541 1.22199 0.93134 1.02504 0.86049 1.22247 0.98661 1.06272 0.91080 1.23765 0.88463 0.71983 0.83239 1.90705 1.19421 1.45911 1.84671 1.84598 1.46907 1.83551 1.17941 1.22236 0.95476 0.98367 0.97389 1.21043 0.99823 1.00462 0.90254 1.20699 0.95616 0.96001 0.96272 1.20561 1.00076 0.99820 0.92656 1.20928 0.97817 0.99782 0.95617 1.20957 0.97237 0.97514 0.98941 1.21401 1.01145 0.99507 0.92277 1.20455 0.96658 0.96253 0.93701 0.91772 0.92648 0.90136 0.92596 0.91164 0.87686 0.86928 0.86896 0.73869 0.91527 0.88708 0.91367 0.89678 0.86612 0.86349 0.86418 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 7.85 37.16 0.29 -2.50 16 2 C -0.04 -0.77 0.55 -155.78 -0.09 -0.86 16 3 C 0.48 11.78 5.82 -10.99 -0.06 11.71 16 4 O -0.52 -14.79 12.52 5.54 0.07 -14.72 16 5 N -0.44 -10.73 2.66 -114.81 -0.30 -11.03 16 6 C -0.36 -9.57 9.07 -14.93 -0.14 -9.71 16 7 H 0.08 2.11 7.35 -52.48 -0.39 1.73 16 8 C 0.08 2.15 4.00 -17.47 -0.07 2.08 16 9 N -0.80 -23.33 11.37 55.50 0.63 -22.69 16 10 Si 0.90 21.70 29.65 -169.99 -5.04 16.66 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.09 1.69 2.75 -4.04 -0.01 1.68 16 15 C -0.14 -2.44 4.98 -27.88 -0.14 -2.58 16 16 C 0.48 7.18 7.34 36.00 0.26 7.44 16 17 O -0.52 -8.76 16.37 -18.75 -0.31 -9.06 16 18 O -0.52 -6.00 13.42 -39.25 -0.53 -6.52 16 19 C -0.10 -1.74 5.74 -25.32 -0.15 -1.88 16 20 C -0.08 -1.29 6.76 -26.85 -0.18 -1.47 16 21 C -0.09 -1.43 6.14 -104.21 -0.64 -2.07 16 22 C -0.11 -1.61 10.04 -39.53 -0.40 -2.01 16 23 C -0.12 -1.62 10.05 -39.62 -0.40 -2.02 16 24 C -0.13 -1.79 9.91 -39.62 -0.39 -2.18 16 25 C -0.13 -2.03 6.02 -39.54 -0.24 -2.26 16 26 C -0.07 -1.25 4.53 -104.21 -0.47 -1.72 16 27 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 28 H 0.05 0.86 7.91 -51.93 -0.41 0.44 16 29 H 0.08 1.53 4.64 -51.93 -0.24 1.29 16 30 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 31 H 0.07 1.44 7.89 -51.93 -0.41 1.03 16 32 H 0.11 1.95 1.54 -51.93 -0.08 1.87 16 33 H 0.11 1.90 5.48 -51.93 -0.28 1.62 16 34 H 0.11 1.96 7.27 -51.93 -0.38 1.58 16 35 H 0.40 2.74 9.10 45.56 0.41 3.15 16 36 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 37 H 0.09 1.92 7.06 -51.93 -0.37 1.56 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.14 2.18 2.75 -52.48 -0.14 2.03 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -33.21 334.52 -7.61 -40.82 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.36 Total: 9.86 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.81 Total: -8.34 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.33 Total: -33.73 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.76 Total: -30.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.04 Total: 16.66 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.21 -7.61 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593743260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.900 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds