Wall clock time and date at job start Tue Mar 31 2020 11:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 110.26878 * 2 1 4 4 O 1.21295 * 119.99783 * 232.47700 * 3 2 1 5 5 N 1.34770 * 120.00379 * 52.48276 * 3 2 1 6 6 C 1.37096 * 120.00196 * 185.40064 * 5 3 2 7 7 H 1.08009 * 119.99680 * 208.01708 * 6 5 3 8 8 C 1.38948 * 120.00219 * 28.01982 * 6 5 3 9 9 N 1.31411 * 120.00379 * 30.71337 * 8 6 5 10 10 Si 1.86806 * 119.99914 * 210.72445 * 8 6 5 11 11 H 1.48500 * 109.47113 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47302 * 119.99702 * 10 8 6 13 13 H 1.48504 * 109.46924 * 239.99715 * 10 8 6 14 14 C 1.46498 * 120.00028 * 5.39010 * 5 3 2 15 15 C 1.53008 * 109.47021 * 110.02150 * 14 5 3 16 16 C 1.50698 * 109.47345 * 173.22524 * 15 14 5 17 17 O 1.20826 * 119.99734 * 0.02562 * 16 15 14 18 18 O 1.34228 * 120.00052 * 179.97438 * 16 15 14 19 19 C 1.54344 * 110.30316 * 237.92275 * 2 1 3 20 20 C 1.54345 * 102.39245 * 214.62713 * 19 2 1 21 21 C 1.51368 * 105.16774 * 26.34871 * 20 19 2 22 22 C 1.38504 * 130.39043 * 162.78990 * 21 20 19 23 23 C 1.38110 * 120.21352 * 180.02562 * 22 21 20 24 24 C 1.38254 * 119.93211 * 0.02562 * 23 22 21 25 25 C 1.38104 * 119.93461 * 359.97438 * 24 23 22 26 26 C 1.38210 * 109.76068 * 342.81333 * 21 20 19 27 27 H 1.08999 * 109.46869 * 84.57009 * 1 2 3 28 28 H 1.08996 * 109.47169 * 204.57177 * 1 2 3 29 29 H 1.09001 * 109.46958 * 324.57218 * 1 2 3 30 30 H 0.96997 * 120.00280 * 184.96655 * 9 8 6 31 31 H 1.09001 * 109.48026 * 230.02325 * 14 5 3 32 32 H 1.09006 * 109.47272 * 350.02901 * 14 5 3 33 33 H 1.08997 * 109.46803 * 293.22743 * 15 14 5 34 34 H 1.08997 * 109.47107 * 53.22399 * 15 14 5 35 35 H 0.96697 * 117.00158 * 179.97438 * 18 16 15 36 36 H 1.09003 * 110.82085 * 332.85979 * 19 2 1 37 37 H 1.09003 * 110.82282 * 96.40530 * 19 2 1 38 38 H 1.09005 * 110.30100 * 145.26988 * 20 19 2 39 39 H 1.08997 * 110.30378 * 267.32152 * 20 19 2 40 40 H 1.08000 * 119.89315 * 0.03264 * 22 21 20 41 41 H 1.07993 * 120.02706 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.02352 * 179.97438 * 24 23 22 43 43 H 1.08005 * 119.88596 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4137 0.0000 4 8 2.8624 1.7609 -0.8331 5 7 1.6188 2.2921 0.9257 6 6 2.0075 3.6051 0.8597 7 1 2.0686 4.1962 1.7616 8 6 2.3229 4.1755 -0.3674 9 7 1.7255 3.7559 -1.4601 10 14 3.5964 5.5388 -0.4640 11 1 4.1176 5.8267 0.8964 12 1 4.7144 5.1104 -1.3424 13 1 2.9692 6.7634 -1.0228 14 6 0.7322 1.8440 2.0024 15 6 1.4914 1.8661 3.3307 16 6 0.5384 1.5666 4.4590 17 8 -0.6281 1.3565 4.2248 18 8 0.9858 1.5323 5.7241 19 6 2.0656 -0.7687 -1.2266 20 6 3.3439 -1.4310 -0.6702 21 6 3.0995 -1.5767 0.8165 22 6 3.7384 -2.3666 1.7579 23 6 3.3372 -2.3352 3.0791 24 6 2.2944 -1.5132 3.4640 25 6 1.6562 -0.7248 2.5267 26 6 2.0573 -0.7546 1.2016 27 1 -0.3633 0.0972 -1.0231 28 1 -0.3633 -0.9346 0.4273 29 1 -0.3633 0.8374 0.5957 30 1 1.9964 4.1024 -2.3246 31 1 -0.1288 2.5094 2.0649 32 1 0.3928 0.8291 1.7949 33 1 2.2795 1.1135 3.3112 34 1 1.9334 2.8512 3.4802 35 1 0.3372 1.3364 6.4140 36 1 1.3497 -1.5226 -1.5542 37 1 2.3066 -0.0829 -2.0387 38 1 3.4923 -2.4096 -1.1268 39 1 4.2096 -0.7942 -0.8521 40 1 4.5529 -3.0092 1.4579 41 1 3.8372 -2.9527 3.8105 42 1 1.9792 -1.4877 4.4967 43 1 0.8413 -0.0833 2.8282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593743260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:37 Heat of formation + Delta-G solvation = -69.471469 kcal Electronic energy + Delta-G solvation = -28693.084819 eV Core-core repulsion = 24897.319495 eV Total energy + Delta-G solvation = -3795.765324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33780 -41.12381 -39.56016 -37.42440 -36.89420 -36.25515 -34.44905 -32.84579 -32.03885 -30.49868 -29.64719 -27.11762 -26.40682 -25.07760 -23.54345 -22.99251 -22.07232 -21.69978 -20.29016 -19.15853 -18.63366 -18.05176 -17.50330 -16.93737 -16.72712 -16.43548 -16.07699 -15.92747 -15.82392 -15.34375 -15.28204 -14.85118 -14.19600 -14.05498 -13.91829 -13.84978 -13.55644 -13.50115 -13.23989 -13.13917 -12.86107 -12.79645 -12.53799 -12.48766 -12.41796 -12.12260 -11.98568 -11.97681 -11.83179 -11.63425 -11.58905 -11.19902 -10.90254 -10.15537 -9.61304 -9.44383 -9.02243 -8.24031 -5.84632 0.46650 0.49455 1.18381 1.37822 1.45652 1.52693 2.02493 2.31108 2.50013 2.84975 3.18596 3.26205 3.51463 3.63610 3.91388 3.98144 4.00184 4.02824 4.10748 4.21320 4.31713 4.39398 4.42674 4.55038 4.61250 4.68009 4.72713 4.74894 4.82137 4.91129 4.96352 5.03364 5.08595 5.13805 5.17905 5.30489 5.37029 5.48887 5.59778 5.60910 5.63151 5.81770 6.10709 6.14404 6.98867 7.02533 7.21293 7.69240 8.37153 8.83832 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.007251 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.469561 B = 3860.448257 C = 5349.547341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C 0.472 3.528 4 O -0.573 6.573 5 N -0.458 5.458 6 C -0.372 4.372 7 H 0.090 0.910 8 C 0.029 3.971 9 N -0.842 5.842 10 Si 0.952 3.048 11 H -0.257 1.257 12 H -0.297 1.297 13 H -0.280 1.280 14 C 0.087 3.913 15 C -0.138 4.138 16 C 0.499 3.501 17 O -0.540 6.540 18 O -0.505 6.505 19 C -0.098 4.098 20 C -0.074 4.074 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.096 4.096 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.257 0.743 31 H 0.055 0.945 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.429 0.571 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.142 0.858 41 H 0.157 0.843 42 H 0.146 0.854 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -13.028 11.810 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.042 4.042 3 C 0.260 3.740 4 O -0.453 6.453 5 N -0.178 5.178 6 C -0.498 4.498 7 H 0.108 0.892 8 C -0.179 4.179 9 N -0.478 5.478 10 Si 0.778 3.222 11 H -0.181 1.181 12 H -0.225 1.225 13 H -0.206 1.206 14 C -0.036 4.036 15 C -0.176 4.176 16 C 0.342 3.658 17 O -0.431 6.431 18 O -0.319 6.319 19 C -0.135 4.135 20 C -0.111 4.111 21 C -0.102 4.102 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.143 4.143 25 C -0.152 4.152 26 C -0.096 4.096 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.291 0.709 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.160 0.840 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.285 -12.729 10.861 16.735 hybrid contribution 0.012 1.183 -0.219 1.203 sum 0.297 -11.546 10.642 15.705 Atomic orbital electron populations 1.22272 0.92551 1.03157 1.02890 1.20227 0.96843 0.92395 0.94739 1.20042 0.84266 0.85992 0.83655 1.90454 1.36113 1.78828 1.39895 1.43413 1.42536 1.07069 1.24739 1.19360 1.49297 0.87462 0.93646 0.89221 1.25607 0.98106 0.99110 0.95047 1.70122 1.35279 1.43549 0.98843 0.85544 0.79691 0.78456 0.78513 1.18072 1.22453 1.20592 1.22270 0.92281 1.02761 0.86278 1.21976 0.98786 1.06143 0.90713 1.23065 0.87304 0.71542 0.83867 1.90714 1.20073 1.47045 1.85237 1.84512 1.47522 1.82806 1.17070 1.22215 0.97192 0.98261 0.95864 1.20958 0.97756 1.01284 0.91053 1.20827 0.95999 0.96925 0.96455 1.20920 1.00205 0.99260 0.92727 1.21387 0.96876 0.99001 0.95791 1.21304 0.96827 0.96467 0.99735 1.21425 1.01525 1.00249 0.92012 1.20350 0.98138 0.97372 0.93745 0.92238 0.89782 0.91633 0.93295 0.92691 0.86199 0.86542 0.87602 0.70896 0.88799 0.92234 0.88188 0.92222 0.84001 0.82586 0.83656 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 7.85 71.98 0.56 -4.92 16 2 C -0.04 -1.53 0.55 -53.00 -0.03 -1.56 16 3 C 0.47 24.11 5.82 87.66 0.51 24.62 16 4 O -0.57 -34.19 12.52 -3.07 -0.04 -34.23 16 5 N -0.46 -22.85 2.66 -635.52 -1.69 -24.54 16 6 C -0.37 -20.43 9.07 84.04 0.76 -19.67 16 7 H 0.09 4.65 7.35 -2.91 -0.02 4.63 16 8 C 0.03 1.69 4.00 84.93 0.34 2.03 16 9 N -0.84 -51.34 11.37 21.66 0.25 -51.10 16 10 Si 0.95 46.02 29.65 68.60 2.03 48.06 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 C 0.09 3.50 2.75 86.38 0.24 3.74 16 15 C -0.14 -4.54 4.98 29.85 0.15 -4.39 16 16 C 0.50 13.75 7.34 71.24 0.52 14.28 16 17 O -0.54 -17.31 16.37 21.96 0.36 -16.95 16 18 O -0.51 -9.86 13.42 -51.39 -0.69 -10.55 16 19 C -0.10 -3.57 5.74 31.51 0.18 -3.39 16 20 C -0.07 -2.38 6.76 30.52 0.21 -2.17 16 21 C -0.10 -3.22 6.14 -19.60 -0.12 -3.34 16 22 C -0.11 -2.81 10.04 22.30 0.22 -2.58 16 23 C -0.11 -2.42 10.05 22.24 0.22 -2.19 16 24 C -0.13 -2.97 9.91 22.24 0.22 -2.75 16 25 C -0.13 -4.03 6.02 22.30 0.13 -3.90 16 26 C -0.10 -3.30 4.53 -19.60 -0.09 -3.39 16 27 H 0.06 2.15 7.98 -2.39 -0.02 2.13 16 28 H 0.08 2.51 7.91 -2.39 -0.02 2.49 16 29 H 0.07 2.55 4.64 -2.39 -0.01 2.54 16 30 H 0.26 15.27 8.32 -92.71 -0.77 14.50 16 31 H 0.05 2.33 7.89 -2.39 -0.02 2.31 16 32 H 0.12 4.46 1.54 -2.38 0.00 4.45 16 33 H 0.12 3.77 5.48 -2.39 -0.01 3.75 16 34 H 0.11 3.63 7.27 -2.39 -0.02 3.61 16 35 H 0.43 4.03 9.10 -74.06 -0.67 3.36 16 36 H 0.09 2.83 7.92 -2.39 -0.02 2.81 16 37 H 0.06 2.58 7.06 -2.39 -0.02 2.57 16 38 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.13 3.94 2.75 -2.91 -0.01 3.94 16 Total: -1.00 -75.86 334.52 4.66 -71.21 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.40 Total: 27.71 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 4.04 Total: -9.61 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.44 Total: -75.64 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -0.37 Total: -61.73 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.86 4.66 -71.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593743260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.734 kcal (2) G-P(sol) polarization free energy of solvation -75.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds