Wall clock time and date at job start Tue Mar 31 2020 11:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 110.34863 * 2 1 4 4 O 1.21299 * 119.99631 * 357.05555 * 3 2 1 5 5 N 1.34774 * 120.00122 * 177.06057 * 3 2 1 6 6 C 1.37089 * 119.99910 * 5.06205 * 5 3 2 7 7 H 1.08001 * 120.00365 * 5.64685 * 6 5 3 8 8 C 1.38950 * 119.99957 * 185.64858 * 6 5 3 9 9 N 1.31411 * 120.00109 * 14.85450 * 8 6 5 10 10 Si 1.86799 * 120.00273 * 194.85571 * 8 6 5 11 11 H 1.48505 * 109.47157 * 59.99716 * 10 8 6 12 12 H 1.48498 * 109.47124 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46977 * 299.99810 * 10 8 6 14 14 C 1.46502 * 119.99854 * 185.06503 * 5 3 2 15 15 C 1.52999 * 109.47176 * 94.07787 * 14 5 3 16 16 C 1.50709 * 109.46946 * 179.97438 * 15 14 5 17 17 O 1.20821 * 119.99748 * 359.97438 * 16 15 14 18 18 O 1.34221 * 119.99980 * 179.97438 * 16 15 14 19 19 C 1.54349 * 110.30537 * 122.12277 * 2 1 3 20 20 C 1.54347 * 102.38752 * 92.57294 * 19 2 1 21 21 C 1.51364 * 105.17133 * 26.35167 * 20 19 2 22 22 C 1.38504 * 130.39689 * 162.81490 * 21 20 19 23 23 C 1.38097 * 120.21784 * 180.02562 * 22 21 20 24 24 C 1.38254 * 119.93851 * 359.97438 * 23 22 21 25 25 C 1.38112 * 119.93096 * 0.25478 * 24 23 22 26 26 C 1.38213 * 109.75872 * 342.81047 * 21 20 19 27 27 H 1.08997 * 109.46986 * 176.62066 * 1 2 3 28 28 H 1.09007 * 109.46957 * 296.61174 * 1 2 3 29 29 H 1.08995 * 109.47523 * 56.61240 * 1 2 3 30 30 H 0.97007 * 120.00443 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.46855 * 214.08126 * 14 5 3 32 32 H 1.09003 * 109.47263 * 334.07743 * 14 5 3 33 33 H 1.09000 * 109.46780 * 300.00009 * 15 14 5 34 34 H 1.09000 * 109.47023 * 60.00367 * 15 14 5 35 35 H 0.96694 * 117.00359 * 180.02562 * 18 16 15 36 36 H 1.09003 * 110.82627 * 210.80240 * 19 2 1 37 37 H 1.09008 * 110.82242 * 334.15531 * 19 2 1 38 38 H 1.08996 * 110.30501 * 267.42372 * 20 19 2 39 39 H 1.08999 * 110.30068 * 145.27435 * 20 19 2 40 40 H 1.07998 * 119.88899 * 359.97438 * 22 21 20 41 41 H 1.08002 * 120.03227 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.03530 * 179.97438 * 24 23 22 43 43 H 1.07995 * 119.89291 * 179.74997 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 1.2812 2.3464 -0.0540 5 7 3.3813 1.6395 0.0599 6 6 4.2588 0.5873 0.0160 7 1 3.8933 -0.4140 -0.1580 8 6 5.6188 0.8089 0.1954 9 7 6.0387 1.9515 0.6903 10 14 6.8503 -0.5174 -0.2670 11 1 6.7249 -0.8265 -1.7141 12 1 8.2260 -0.0368 0.0187 13 1 6.5788 -1.7431 0.5263 14 6 3.8861 3.0103 0.1718 15 6 4.1103 3.3523 1.6462 16 6 4.6302 4.7622 1.7613 17 8 4.8040 5.4251 0.7662 18 8 4.9002 5.2814 2.9692 19 6 2.0656 -0.7697 1.2260 20 6 2.2440 -2.1978 0.6683 21 6 2.4654 -2.0178 -0.8182 22 6 2.9847 -2.8900 -1.7605 23 6 3.0943 -2.5017 -3.0812 24 6 2.6841 -1.2385 -3.4653 25 6 2.1704 -0.3656 -2.5263 26 6 2.0553 -0.7550 -1.2022 27 1 -0.3633 -1.0259 -0.0606 28 1 -0.3633 0.4604 0.9189 29 1 -0.3634 0.5655 -0.8580 30 1 6.9881 2.1064 0.8152 31 1 4.8289 3.0955 -0.3685 32 1 3.1590 3.7012 -0.2549 33 1 3.1675 3.2670 2.1864 34 1 4.8374 2.6614 2.0729 35 1 5.2313 6.1896 2.9927 36 1 3.0208 -0.3597 1.5540 37 1 1.3401 -0.7560 2.0394 38 1 1.3461 -2.7890 0.8481 39 1 3.1105 -2.6765 1.1245 40 1 3.3058 -3.8768 -1.4612 41 1 3.4993 -3.1844 -3.8136 42 1 2.7695 -0.9330 -4.4976 43 1 1.8539 0.6224 -2.8263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593743263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:40 Heat of formation + Delta-G solvation = -82.187314 kcal Electronic energy + Delta-G solvation = -28241.896736 eV Core-core repulsion = 24445.580012 eV Total energy + Delta-G solvation = -3796.316724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60198 -39.46367 -38.07933 -35.70628 -35.30566 -35.08219 -31.56493 -31.48747 -30.42938 -29.22890 -28.22175 -25.35602 -25.05478 -23.39888 -22.20806 -20.97081 -20.52047 -19.93740 -18.81307 -17.53221 -17.03396 -16.48000 -15.65531 -15.28259 -15.02074 -14.89425 -14.61916 -14.38099 -14.16631 -13.68632 -13.67353 -12.96269 -12.93140 -12.56355 -12.41490 -12.33293 -12.10949 -11.73107 -11.67706 -11.48909 -11.34097 -11.15076 -11.00826 -10.86487 -10.81039 -10.62108 -10.47823 -10.41222 -10.16524 -10.11690 -9.94637 -9.76546 -8.97476 -8.57637 -8.31359 -7.89785 -7.81425 -6.39134 -3.94247 1.81724 1.87229 3.03329 3.08682 3.17877 3.20782 3.63963 3.89092 4.05574 4.21686 4.67059 4.92210 4.94129 5.15140 5.37946 5.44668 5.50766 5.54286 5.71629 5.90367 5.95222 5.96583 6.03602 6.05977 6.10998 6.25757 6.32276 6.41310 6.45252 6.50138 6.55039 6.57824 6.71866 6.78352 6.88545 6.92486 6.96301 7.07952 7.16594 7.25097 7.40173 7.45375 7.56578 7.66380 8.38127 8.64056 9.00971 9.43908 9.83027 10.53702 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013677 B = 0.006071 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.672007 B = 4610.635126 C = 5597.111309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.027 4.027 3 C 0.464 3.536 4 O -0.605 6.605 5 N -0.437 5.437 6 C -0.324 4.324 7 H 0.120 0.880 8 C 0.032 3.968 9 N -0.874 5.874 10 Si 0.915 3.085 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.153 3.847 15 C -0.108 4.108 16 C 0.492 3.508 17 O -0.530 6.530 18 O -0.528 6.528 19 C -0.120 4.120 20 C -0.077 4.077 21 C -0.095 4.095 22 C -0.113 4.113 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.093 4.093 26 C -0.047 4.047 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.269 0.731 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.395 0.605 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -6.820 0.530 7.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.030 4.030 3 C 0.253 3.747 4 O -0.492 6.492 5 N -0.154 5.154 6 C -0.451 4.451 7 H 0.138 0.862 8 C -0.170 4.170 9 N -0.515 5.515 10 Si 0.742 3.258 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.197 1.197 14 C 0.029 3.971 15 C -0.146 4.146 16 C 0.336 3.664 17 O -0.419 6.419 18 O -0.339 6.339 19 C -0.157 4.157 20 C -0.114 4.114 21 C -0.095 4.095 22 C -0.131 4.131 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.112 4.112 26 C -0.047 4.047 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.251 0.749 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.359 -6.503 0.256 7.324 hybrid contribution 1.217 0.059 -0.266 1.247 sum -2.142 -6.444 -0.010 6.791 Atomic orbital electron populations 1.21500 0.92450 1.00408 1.02711 1.20099 0.95951 0.93762 0.93195 1.19770 0.82488 0.89532 0.82949 1.90536 1.56569 1.44815 1.57240 1.43726 1.03990 1.06336 1.61318 1.20274 0.87659 0.90042 1.47145 0.86234 1.25179 0.98014 0.97509 0.96277 1.69994 1.15862 1.23894 1.41742 0.86138 0.79394 0.80581 0.79721 1.19704 1.20923 1.19722 1.21038 1.00216 0.82098 0.93717 1.22065 1.02081 0.88980 1.01520 1.23999 0.72926 0.90004 0.79516 1.90619 1.50635 1.62366 1.38299 1.84615 1.78800 1.34924 1.35554 1.22644 1.03787 0.93512 0.95773 1.21007 1.01405 0.98011 0.90972 1.20528 0.98806 0.94496 0.95676 1.20482 1.00859 0.99066 0.92697 1.20874 1.01419 0.96634 0.95704 1.20904 0.99937 0.94041 0.98968 1.20563 0.99286 0.99195 0.92109 1.20178 0.96809 0.94267 0.93455 0.93057 0.92158 0.92236 0.92002 0.87334 0.93301 0.91200 0.83416 0.74864 0.87286 0.91290 0.90912 0.90797 0.86856 0.86621 0.86524 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 7.83 37.16 0.29 -1.64 16 2 C -0.03 -0.51 0.66 -155.78 -0.10 -0.62 16 3 C 0.46 10.73 6.36 -10.98 -0.07 10.66 16 4 O -0.60 -15.56 15.51 5.54 0.09 -15.48 16 5 N -0.44 -10.38 2.59 -114.81 -0.30 -10.68 16 6 C -0.32 -7.54 6.93 -14.94 -0.10 -7.64 16 7 H 0.12 2.66 3.00 -52.49 -0.16 2.50 16 8 C 0.03 0.76 5.20 -17.47 -0.09 0.67 16 9 N -0.87 -20.86 7.42 55.50 0.41 -20.45 16 10 Si 0.92 19.09 29.58 -169.99 -5.03 14.06 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 14 C 0.15 3.70 4.04 -4.04 -0.02 3.69 16 15 C -0.11 -2.38 5.43 -27.88 -0.15 -2.53 16 16 C 0.49 10.19 8.33 36.01 0.30 10.49 16 17 O -0.53 -12.27 16.74 -18.75 -0.31 -12.58 16 18 O -0.53 -8.84 13.42 -39.23 -0.53 -9.37 16 19 C -0.12 -2.05 5.36 -25.32 -0.14 -2.18 16 20 C -0.08 -1.15 6.58 -26.85 -0.18 -1.33 16 21 C -0.09 -1.60 4.98 -104.21 -0.52 -2.12 16 22 C -0.11 -1.74 10.04 -39.53 -0.40 -2.14 16 23 C -0.13 -1.92 10.05 -39.63 -0.40 -2.32 16 24 C -0.12 -1.93 10.05 -39.62 -0.40 -2.32 16 25 C -0.09 -1.72 9.77 -39.53 -0.39 -2.10 16 26 C -0.05 -0.87 3.06 -104.21 -0.32 -1.18 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.07 8.01 -51.93 -0.42 0.65 16 30 H 0.27 6.29 8.31 -40.82 -0.34 5.96 16 31 H 0.11 2.84 5.98 -51.93 -0.31 2.53 16 32 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 33 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.15 3.40 5.82 -51.93 -0.30 3.10 16 35 H 0.39 4.63 9.10 45.56 0.41 5.04 16 36 H 0.11 2.13 5.59 -51.93 -0.29 1.84 16 37 H 0.07 1.04 7.90 -51.92 -0.41 0.63 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -28.92 345.13 -7.93 -36.85 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -4.79 Total: 15.04 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.67 Total: -2.61 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.11 Total: -31.13 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.75 Total: -37.42 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.92 -7.93 -36.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593743263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.337 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds