Wall clock time and date at job start Tue Mar 31 2020 11:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38085 * 119.84937 * 2 1 4 4 C 1.39717 * 120.13708 * 179.97438 * 3 2 1 5 5 C 1.47741 * 120.07655 * 180.02562 * 4 3 2 6 6 O 1.21471 * 120.00241 * 185.05027 * 5 4 3 7 7 O 1.34711 * 120.00159 * 5.04652 * 5 4 3 8 8 C 1.39388 * 119.84522 * 0.02562 * 4 3 2 9 9 C 1.39280 * 119.69973 * 359.97438 * 8 4 3 10 10 C 1.47858 * 120.06769 * 179.97438 * 9 8 4 11 11 O 1.21556 * 119.99616 * 150.49086 * 10 9 8 12 12 N 1.34778 * 120.00216 * 330.49032 * 10 9 8 13 13 C 1.46498 * 120.00000 * 6.36405 * 12 10 9 14 14 C 1.50707 * 109.46982 * 98.85203 * 13 12 10 15 15 H 1.07996 * 120.00023 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99933 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99949 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47268 * 60.00371 * 18 16 14 20 20 H 1.48503 * 109.46768 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47335 * 299.99665 * 18 16 14 22 22 C 1.46506 * 119.99809 * 186.36311 * 12 10 9 23 23 C 1.52996 * 109.46933 * 94.55599 * 22 12 10 24 24 C 1.52997 * 117.49761 * 243.48654 * 23 22 12 25 25 C 1.52998 * 117.49495 * 174.83060 * 23 22 12 26 26 C 1.38064 * 119.84990 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47006 * 270.00296 * 1 2 3 28 28 H 1.08998 * 109.47149 * 29.99837 * 1 2 3 29 29 H 1.08994 * 109.47084 * 149.99719 * 1 2 3 30 30 H 1.07996 * 119.93297 * 0.02710 * 3 2 1 31 31 H 0.96703 * 116.99790 * 180.02562 * 7 5 4 32 32 H 1.07997 * 120.14503 * 180.02562 * 8 4 3 33 33 H 1.08998 * 109.47208 * 218.85036 * 13 12 10 34 34 H 1.08993 * 109.46719 * 338.85808 * 13 12 10 35 35 H 0.96996 * 119.99950 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.46679 * 214.56105 * 22 12 10 37 37 H 1.08999 * 109.47005 * 334.55441 * 22 12 10 38 38 H 1.09000 * 115.55301 * 29.16642 * 23 22 12 39 39 H 1.08998 * 117.50290 * 0.02562 * 24 23 22 40 40 H 1.09005 * 117.49497 * 145.02145 * 24 23 22 41 41 H 1.09007 * 117.49808 * 214.98233 * 25 23 22 42 42 H 1.09005 * 117.50184 * 0.02562 * 25 23 22 43 43 H 1.08005 * 119.92007 * 0.27883 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1977 0.0000 4 6 3.5914 1.2047 0.0005 5 6 4.3254 2.4869 0.0011 6 8 5.5366 2.4934 -0.0910 7 8 3.6515 3.6488 0.1037 8 6 4.2912 -0.0008 0.0005 9 6 3.5913 -1.2050 0.0005 10 6 4.3253 -2.4885 0.0000 11 8 3.8319 -3.4710 0.5185 12 7 5.5414 -2.5691 -0.5754 13 6 6.1966 -1.3582 -1.0761 14 6 7.1978 -0.8722 -0.0599 15 1 7.3329 -1.4116 0.8659 16 6 7.9422 0.2605 -0.3127 17 7 7.7781 0.9171 -1.4404 18 14 9.1837 0.8626 0.9464 19 1 10.2030 -0.1917 1.1798 20 1 9.8486 2.0894 0.4384 21 1 8.4869 1.1685 2.2216 22 6 6.2081 -3.8677 -0.7002 23 6 5.9095 -4.4640 -2.0773 24 6 5.1210 -5.7743 -2.1238 25 6 6.6165 -5.7685 -2.4505 26 6 2.1942 -1.1975 0.0005 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6508 2.1309 0.0004 31 1 4.1750 4.4618 0.0993 32 1 5.3712 -0.0011 0.0014 33 1 6.7084 -1.5825 -2.0119 34 1 5.4482 -0.5846 -1.2474 35 1 8.3020 1.7137 -1.6185 36 1 7.2841 -3.7361 -0.5867 37 1 5.8407 -4.5407 0.0745 38 1 5.7328 -3.7416 -2.8741 39 1 4.8146 -6.2114 -1.1735 40 1 4.4257 -5.9140 -2.9516 41 1 6.9044 -5.9045 -3.4930 42 1 7.2939 -6.2022 -1.7149 43 1 1.6504 -2.1306 -0.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594282790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:01 Heat of formation + Delta-G solvation = -53.577999 kcal Electronic energy + Delta-G solvation = -27189.576004 eV Core-core repulsion = 23394.499873 eV Total energy + Delta-G solvation = -3795.076131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27417 -39.32492 -37.98548 -36.80375 -35.60849 -35.03917 -32.58718 -32.45351 -31.15835 -28.18621 -26.68208 -26.29080 -24.27407 -23.35534 -22.44869 -22.05480 -20.35742 -20.19169 -18.87656 -17.49920 -16.69084 -16.46001 -16.22534 -15.83691 -15.42079 -15.10926 -14.98256 -14.45561 -14.40368 -14.16160 -13.63950 -13.45627 -13.19681 -13.06552 -12.82473 -12.35538 -12.12199 -11.92921 -11.82949 -11.50672 -11.46011 -11.28595 -11.25052 -10.99679 -10.91179 -10.86157 -10.31020 -10.14989 -10.01292 -9.86885 -9.72093 -9.57432 -9.12531 -8.69307 -8.60067 -8.15697 -7.75934 -6.16250 -4.25408 1.02096 1.50145 2.87041 3.29805 3.35224 3.36757 3.39854 3.54730 3.77627 4.15495 4.23894 4.39633 4.94697 5.01592 5.10927 5.18511 5.21733 5.25136 5.33259 5.43421 5.55378 5.65983 5.73478 5.79336 5.80916 5.85090 5.96580 6.10604 6.13680 6.13703 6.23350 6.32796 6.36348 6.58341 6.66233 6.72401 6.74233 6.85392 6.94778 7.15707 7.27190 7.48505 7.76614 7.99699 8.29188 8.41102 8.76199 8.94148 9.43525 10.89025 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.006849 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.486668 B = 4087.144192 C = 6730.705725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C -0.049 4.049 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.463 6.463 7 O -0.526 6.526 8 C -0.041 4.041 9 C -0.142 4.142 10 C 0.560 3.440 11 O -0.567 6.567 12 N -0.584 5.584 13 C 0.211 3.789 14 C -0.562 4.562 15 H 0.062 0.938 16 C 0.087 3.913 17 N -0.858 5.858 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.149 3.851 23 C -0.160 4.160 24 C -0.178 4.178 25 C -0.178 4.178 26 C -0.035 4.035 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.132 0.868 31 H 0.407 0.593 32 H 0.221 0.779 33 H 0.034 0.966 34 H 0.063 0.937 35 H 0.268 0.732 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 -0.717 -0.697 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.130 4.130 3 C -0.068 4.068 4 C -0.139 4.139 5 C 0.349 3.651 6 O -0.347 6.347 7 O -0.339 6.339 8 C -0.058 4.058 9 C -0.145 4.145 10 C 0.349 3.651 11 O -0.449 6.449 12 N -0.312 5.312 13 C 0.092 3.908 14 C -0.600 4.600 15 H 0.081 0.919 16 C -0.122 4.122 17 N -0.492 5.492 18 Si 0.725 3.275 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.201 1.201 22 C 0.026 3.974 23 C -0.179 4.179 24 C -0.215 4.215 25 C -0.216 4.216 26 C -0.054 4.054 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.265 0.735 32 H 0.236 0.764 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.727 -1.419 -0.601 9.848 hybrid contribution 1.095 1.114 0.469 1.631 sum -8.632 -0.305 -0.132 8.638 Atomic orbital electron populations 1.20700 0.90698 1.02627 1.02201 1.19668 0.96252 0.92515 1.04596 1.21431 0.92980 0.98033 0.94318 1.19013 0.93042 0.90847 1.11028 1.20914 0.86123 0.83888 0.74133 1.91100 1.13975 1.87203 1.42459 1.84523 1.45601 1.17113 1.86627 1.23783 1.06823 0.88935 0.86249 1.19894 0.93757 0.93779 1.07080 1.18129 0.81386 0.87266 0.78352 1.90662 1.69031 1.38135 1.47087 1.48039 1.16598 1.09456 1.57104 1.20318 0.93549 0.81479 0.95492 1.21247 1.22389 1.11823 1.04512 0.91934 1.24818 0.96350 0.95711 0.95273 1.69830 1.39165 1.17288 1.22920 0.86562 0.81084 0.78031 0.81818 1.20380 1.21128 1.20068 1.20880 0.97977 0.84666 0.93926 1.22778 1.04357 0.90769 1.00020 1.22992 0.93865 1.01815 1.02857 1.22904 0.95229 1.01602 1.01856 1.21279 0.92787 0.97972 0.93392 0.91378 0.91621 0.91584 0.84964 0.73540 0.76374 0.94813 0.92034 0.92203 0.89680 0.90404 0.87777 0.88753 0.89505 0.89138 0.88876 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.00 36.01 0.36 -0.74 16 2 C -0.13 -1.88 5.87 -104.74 -0.61 -2.50 16 3 C -0.05 -0.75 9.26 -39.09 -0.36 -1.11 16 4 C -0.14 -2.57 5.87 -105.03 -0.62 -3.19 16 5 C 0.51 9.46 8.26 34.61 0.29 9.74 16 6 O -0.46 -10.47 17.06 -19.24 -0.33 -10.80 16 7 O -0.53 -7.29 12.68 -40.52 -0.51 -7.80 16 8 C -0.04 -0.86 7.03 -38.77 -0.27 -1.14 16 9 C -0.14 -2.85 5.59 -105.02 -0.59 -3.44 16 10 C 0.56 12.15 7.46 -12.32 -0.09 12.05 16 11 O -0.57 -12.95 16.19 5.32 0.09 -12.86 16 12 N -0.58 -12.52 2.47 -176.17 -0.43 -12.95 16 13 C 0.21 4.99 4.67 -5.19 -0.02 4.96 16 14 C -0.56 -14.46 7.54 -34.44 -0.26 -14.72 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.09 2.27 5.34 -17.82 -0.10 2.18 16 17 N -0.86 -23.19 13.21 55.43 0.73 -22.46 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 2.81 5.78 -4.04 -0.02 2.78 16 23 C -0.16 -2.63 6.01 -90.62 -0.54 -3.18 16 24 C -0.18 -2.56 10.18 -26.70 -0.27 -2.83 16 25 C -0.18 -2.40 10.25 -26.70 -0.27 -2.67 16 26 C -0.04 -0.59 9.23 -39.10 -0.36 -0.95 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.13 1.68 7.61 -52.49 -0.40 1.28 16 31 H 0.41 3.86 9.11 45.56 0.42 4.27 16 32 H 0.22 5.31 2.65 -52.49 -0.14 5.17 16 33 H 0.03 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.06 1.52 3.98 -52.37 -0.21 1.32 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.08 1.61 8.11 -51.93 -0.42 1.19 16 37 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 38 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.13 2.04 7.91 -52.48 -0.42 1.62 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -30.45 366.30 -8.58 -39.02 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.87 Total: 10.91 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -3.75 Total: -4.74 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.30 Total: -35.41 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.76 Total: -31.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.45 -8.58 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594282790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.553 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds