Wall clock time and date at job start Tue Mar 31 2020 11:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38085 * 119.84937 * 2 1 4 4 C 1.39717 * 120.13708 * 179.97438 * 3 2 1 5 5 C 1.47741 * 120.07655 * 180.02562 * 4 3 2 6 6 O 1.21471 * 120.00241 * 185.05027 * 5 4 3 7 7 O 1.34711 * 120.00159 * 5.04652 * 5 4 3 8 8 C 1.39388 * 119.84522 * 0.02562 * 4 3 2 9 9 C 1.39280 * 119.69973 * 359.97438 * 8 4 3 10 10 C 1.47858 * 120.06769 * 179.97438 * 9 8 4 11 11 O 1.21556 * 119.99616 * 150.49086 * 10 9 8 12 12 N 1.34778 * 120.00216 * 330.49032 * 10 9 8 13 13 C 1.46498 * 120.00000 * 6.36405 * 12 10 9 14 14 C 1.50707 * 109.46982 * 98.85203 * 13 12 10 15 15 H 1.07996 * 120.00023 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99933 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99949 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47268 * 60.00371 * 18 16 14 20 20 H 1.48503 * 109.46768 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47335 * 299.99665 * 18 16 14 22 22 C 1.46506 * 119.99809 * 186.36311 * 12 10 9 23 23 C 1.52996 * 109.46933 * 94.55599 * 22 12 10 24 24 C 1.52997 * 117.49761 * 243.48654 * 23 22 12 25 25 C 1.52998 * 117.49495 * 174.83060 * 23 22 12 26 26 C 1.38064 * 119.84990 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47006 * 270.00296 * 1 2 3 28 28 H 1.08998 * 109.47149 * 29.99837 * 1 2 3 29 29 H 1.08994 * 109.47084 * 149.99719 * 1 2 3 30 30 H 1.07996 * 119.93297 * 0.02710 * 3 2 1 31 31 H 0.96703 * 116.99790 * 180.02562 * 7 5 4 32 32 H 1.07997 * 120.14503 * 180.02562 * 8 4 3 33 33 H 1.08998 * 109.47208 * 218.85036 * 13 12 10 34 34 H 1.08993 * 109.46719 * 338.85808 * 13 12 10 35 35 H 0.96996 * 119.99950 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.46679 * 214.56105 * 22 12 10 37 37 H 1.08999 * 109.47005 * 334.55441 * 22 12 10 38 38 H 1.09000 * 115.55301 * 29.16642 * 23 22 12 39 39 H 1.08998 * 117.50290 * 0.02562 * 24 23 22 40 40 H 1.09005 * 117.49497 * 145.02145 * 24 23 22 41 41 H 1.09007 * 117.49808 * 214.98233 * 25 23 22 42 42 H 1.09005 * 117.50184 * 0.02562 * 25 23 22 43 43 H 1.08005 * 119.92007 * 0.27883 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1977 0.0000 4 6 3.5914 1.2047 0.0005 5 6 4.3254 2.4869 0.0011 6 8 5.5366 2.4934 -0.0910 7 8 3.6515 3.6488 0.1037 8 6 4.2912 -0.0008 0.0005 9 6 3.5913 -1.2050 0.0005 10 6 4.3253 -2.4885 0.0000 11 8 3.8319 -3.4710 0.5185 12 7 5.5414 -2.5691 -0.5754 13 6 6.1966 -1.3582 -1.0761 14 6 7.1978 -0.8722 -0.0599 15 1 7.3329 -1.4116 0.8659 16 6 7.9422 0.2605 -0.3127 17 7 7.7781 0.9171 -1.4404 18 14 9.1837 0.8626 0.9464 19 1 10.2030 -0.1917 1.1798 20 1 9.8486 2.0894 0.4384 21 1 8.4869 1.1685 2.2216 22 6 6.2081 -3.8677 -0.7002 23 6 5.9095 -4.4640 -2.0773 24 6 5.1210 -5.7743 -2.1238 25 6 6.6165 -5.7685 -2.4505 26 6 2.1942 -1.1975 0.0005 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6508 2.1309 0.0004 31 1 4.1750 4.4618 0.0993 32 1 5.3712 -0.0011 0.0014 33 1 6.7084 -1.5825 -2.0119 34 1 5.4482 -0.5846 -1.2474 35 1 8.3020 1.7137 -1.6185 36 1 7.2841 -3.7361 -0.5867 37 1 5.8407 -4.5407 0.0745 38 1 5.7328 -3.7416 -2.8741 39 1 4.8146 -6.2114 -1.1735 40 1 4.4257 -5.9140 -2.9516 41 1 6.9044 -5.9045 -3.4930 42 1 7.2939 -6.2022 -1.7149 43 1 1.6504 -2.1306 -0.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594282790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:00 Heat of formation + Delta-G solvation = -70.799218 kcal Electronic energy + Delta-G solvation = -27190.322772 eV Core-core repulsion = 23394.499873 eV Total energy + Delta-G solvation = -3795.822899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76463 -40.82934 -39.35861 -38.17441 -37.00985 -36.69859 -34.44084 -33.80218 -32.56241 -29.87899 -28.23402 -27.53048 -25.65641 -25.16820 -23.98672 -23.19705 -21.69985 -21.51592 -20.42981 -18.91831 -18.57846 -17.99925 -17.78243 -17.31522 -16.88797 -16.51910 -16.46259 -16.19996 -15.94529 -15.54810 -14.90411 -14.72474 -14.59025 -14.44797 -14.31273 -14.17967 -13.51405 -13.16653 -13.08369 -12.99838 -12.85083 -12.66712 -12.62108 -12.57896 -12.37711 -12.34884 -12.17693 -11.79441 -11.61135 -11.41552 -11.34586 -10.88017 -10.77011 -10.53310 -10.10821 -9.58397 -9.49988 -8.18217 -6.31674 -0.35723 0.07837 1.37595 1.40204 1.45249 1.46906 1.95068 2.11165 2.20115 2.43629 2.80910 2.92754 3.15601 3.56208 3.81847 3.84467 3.99324 4.00691 4.11899 4.23065 4.25472 4.38353 4.39144 4.63098 4.68755 4.76084 4.81080 4.85868 4.88896 4.90448 4.94214 5.00138 5.19413 5.25387 5.25584 5.27158 5.34284 5.44804 5.48889 5.64328 5.70365 5.78542 5.86526 6.01847 6.50948 6.77030 7.12067 7.20091 7.40127 8.85598 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.006849 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.486668 B = 4087.144192 C = 6730.705725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.112 4.112 3 C -0.033 4.033 4 C -0.154 4.154 5 C 0.514 3.486 6 O -0.514 6.514 7 O -0.504 6.504 8 C -0.070 4.070 9 C -0.164 4.164 10 C 0.554 3.446 11 O -0.585 6.585 12 N -0.587 5.587 13 C 0.229 3.771 14 C -0.565 4.565 15 H 0.048 0.952 16 C 0.053 3.947 17 N -0.878 5.878 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.148 3.852 23 C -0.187 4.187 24 C -0.169 4.169 25 C -0.155 4.155 26 C -0.035 4.035 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.428 0.572 32 H 0.187 0.813 33 H 0.013 0.987 34 H 0.058 0.942 35 H 0.266 0.734 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 -0.407 -0.696 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.051 4.051 4 C -0.155 4.155 5 C 0.358 3.642 6 O -0.402 6.402 7 O -0.318 6.318 8 C -0.087 4.087 9 C -0.167 4.167 10 C 0.344 3.656 11 O -0.469 6.469 12 N -0.315 5.315 13 C 0.109 3.891 14 C -0.603 4.603 15 H 0.067 0.933 16 C -0.152 4.152 17 N -0.513 5.513 18 Si 0.769 3.231 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C 0.026 3.974 23 C -0.206 4.206 24 C -0.206 4.206 25 C -0.192 4.192 26 C -0.054 4.054 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.186 0.814 31 H 0.289 0.711 32 H 0.203 0.797 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.172 -1.099 -0.600 12.236 hybrid contribution 1.701 1.069 0.502 2.071 sum -10.471 -0.030 -0.099 10.472 Atomic orbital electron populations 1.20830 0.86923 1.04464 1.03849 1.20165 0.98642 0.91060 1.01361 1.21791 0.91358 0.99892 0.92048 1.19135 0.94677 0.90024 1.11645 1.20974 0.85453 0.84976 0.72831 1.91084 1.16104 1.88005 1.45014 1.84450 1.44947 1.16869 1.85539 1.23383 1.05591 0.90657 0.89116 1.19879 0.95202 0.92458 1.09168 1.18494 0.81335 0.87953 0.77836 1.90624 1.69384 1.38930 1.47933 1.48061 1.16835 1.09667 1.56965 1.19954 0.92946 0.82172 0.94011 1.21298 1.22896 1.11835 1.04266 0.93334 1.25328 0.97629 0.95788 0.96505 1.69907 1.39860 1.17445 1.24065 0.85861 0.79581 0.77891 0.79815 1.19440 1.20688 1.20715 1.20949 0.97208 0.83706 0.95580 1.22586 1.08103 0.91800 0.98091 1.23038 0.94911 0.99371 1.03284 1.23029 0.94851 0.98054 1.03250 1.21517 0.91359 0.99738 0.92788 0.89616 0.89294 0.90386 0.81445 0.71057 0.79699 0.96885 0.92499 0.92515 0.90611 0.90735 0.89219 0.89067 0.88034 0.87209 0.87806 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.00 71.24 0.71 -0.93 16 2 C -0.11 -2.88 5.87 -19.94 -0.12 -2.99 16 3 C -0.03 -0.90 9.26 22.59 0.21 -0.69 16 4 C -0.15 -5.66 5.87 -20.13 -0.12 -5.78 16 5 C 0.51 18.98 8.26 70.33 0.58 19.56 16 6 O -0.51 -23.89 17.06 19.93 0.34 -23.55 16 7 O -0.50 -12.78 12.68 -56.21 -0.71 -13.49 16 8 C -0.07 -3.05 7.03 22.80 0.16 -2.89 16 9 C -0.16 -6.73 5.59 -20.12 -0.11 -6.84 16 10 C 0.55 24.91 7.46 86.79 0.65 25.56 16 11 O -0.59 -27.30 16.19 -3.89 -0.06 -27.37 16 12 N -0.59 -26.55 2.47 -829.54 -2.05 -28.60 16 13 C 0.23 11.52 4.67 85.64 0.40 11.92 16 14 C -0.57 -30.58 7.54 25.60 0.19 -30.39 16 15 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 16 C 0.05 2.90 5.34 84.65 0.45 3.35 16 17 N -0.88 -49.27 13.21 21.45 0.28 -48.98 16 18 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 C 0.15 5.85 5.78 86.38 0.50 6.35 16 23 C -0.19 -6.25 6.01 -10.80 -0.06 -6.31 16 24 C -0.17 -4.69 10.18 30.62 0.31 -4.38 16 25 C -0.15 -3.95 10.25 30.62 0.31 -3.64 16 26 C -0.04 -1.13 9.23 22.58 0.21 -0.93 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 29 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 30 H 0.17 3.42 7.61 -2.91 -0.02 3.39 16 31 H 0.43 7.13 9.11 -74.06 -0.67 6.45 16 32 H 0.19 9.50 2.65 -2.91 -0.01 9.50 16 33 H 0.01 0.70 8.13 -2.39 -0.02 0.68 16 34 H 0.06 3.00 3.98 -2.81 -0.01 2.99 16 35 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.08 3.04 8.11 -2.39 -0.02 3.02 16 37 H 0.07 2.94 6.95 -2.39 -0.02 2.92 16 38 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.09 2.60 8.03 -2.39 -0.02 2.58 16 40 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 42 H 0.10 2.44 8.14 -2.38 -0.02 2.43 16 43 H 0.14 4.21 7.91 -2.91 -0.02 4.19 16 Total: -1.00 -69.61 366.30 4.48 -65.13 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.38 Total: 29.32 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 4.28 Total: 0.97 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -1.76 Total: -77.58 kcal Atomic # 8 Polarization: -63.98 SS G_CDS: -0.44 Total: -64.41 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.61 4.48 -65.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594282790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.670 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds