Wall clock time and date at job start Tue Mar 31 2020 12:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 115.54937 * 2 1 4 4 C 1.38236 * 120.00299 * 33.11814 * 3 2 1 5 5 C 1.38236 * 120.00016 * 180.25513 * 4 3 2 6 6 C 1.38234 * 120.00116 * 359.50974 * 5 4 3 7 7 C 1.38236 * 119.99915 * 0.27655 * 6 5 4 8 8 C 1.38236 * 119.99997 * 359.95487 * 7 6 5 9 9 C 1.53004 * 117.51328 * 214.30054 * 2 1 3 10 10 C 1.52993 * 117.49624 * 145.67288 * 2 1 3 11 11 H 1.09000 * 117.50294 * 359.97438 * 10 2 1 12 12 C 1.50704 * 117.49942 * 214.99795 * 10 2 1 13 13 O 1.21288 * 119.99998 * 272.00898 * 12 10 2 14 14 N 1.34779 * 119.99605 * 92.00909 * 12 10 2 15 15 C 1.37094 * 120.00254 * 4.27710 * 14 12 10 16 16 H 1.08002 * 120.00104 * 318.85070 * 15 14 12 17 17 C 1.38951 * 119.99812 * 138.84386 * 15 14 12 18 18 N 1.31414 * 120.00324 * 342.92269 * 17 15 14 19 19 Si 1.86805 * 119.99870 * 162.92108 * 17 15 14 20 20 H 1.48494 * 109.47153 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47082 * 120.00289 * 19 17 15 22 22 H 1.48496 * 109.47187 * 240.00111 * 19 17 15 23 23 C 1.46502 * 119.99814 * 184.28135 * 14 12 10 24 24 C 1.52998 * 109.47136 * 89.99865 * 23 14 12 25 25 C 1.50700 * 109.47241 * 179.97438 * 24 23 14 26 26 O 1.20833 * 119.99738 * 0.02562 * 25 24 23 27 27 O 1.34224 * 120.00271 * 179.97438 * 25 24 23 28 28 H 1.09005 * 109.46938 * 34.41802 * 1 2 3 29 29 H 1.09000 * 109.46899 * 154.41386 * 1 2 3 30 30 H 1.09001 * 109.46802 * 274.41506 * 1 2 3 31 31 H 1.08006 * 119.99846 * 0.03611 * 4 3 2 32 32 H 1.08004 * 120.00111 * 179.78163 * 5 4 3 33 33 H 1.07998 * 119.99833 * 180.25782 * 6 5 4 34 34 H 1.07998 * 119.99988 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.99869 * 180.02562 * 8 7 6 36 36 H 1.08996 * 117.50029 * 0.02562 * 9 2 1 37 37 H 1.08998 * 117.49530 * 145.03119 * 9 2 1 38 38 H 0.96993 * 120.00169 * 185.08570 * 18 17 15 39 39 H 1.08998 * 109.47040 * 209.99759 * 23 14 12 40 40 H 1.09004 * 109.46986 * 330.00044 * 23 14 12 41 41 H 1.08998 * 109.47070 * 299.99876 * 24 23 14 42 42 H 1.09004 * 109.47037 * 60.00210 * 24 23 14 43 43 H 0.96699 * 116.99906 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 1.5735 2.4156 0.6541 5 6 2.1671 3.6641 0.6496 6 6 3.3722 3.8540 -0.0004 7 6 3.9809 2.7969 -0.6507 8 6 3.3850 1.5497 -0.6503 9 6 2.2369 -1.1210 -0.7647 10 6 2.2364 -1.1207 0.7653 11 1 1.6112 -1.8579 1.2692 12 6 3.5290 -0.7806 1.4614 13 8 4.5805 -0.8644 0.8628 14 7 3.5165 -0.3834 2.7493 15 6 2.3394 -0.3726 3.4520 16 1 1.4321 -0.0252 2.9803 17 6 2.3137 -0.8089 4.7710 18 7 3.3035 -1.5330 5.2430 19 14 0.8721 -0.3659 5.8733 20 1 -0.1041 0.4502 5.1076 21 1 0.2125 -1.6085 6.3489 22 1 1.3615 0.4123 7.0395 23 6 4.7608 0.0371 3.3983 24 6 4.9548 1.5420 3.2027 25 6 6.2344 1.9747 3.8708 26 8 6.9212 1.1624 4.4441 27 8 6.6119 3.2620 3.8282 28 1 -0.3633 0.8478 -0.5809 29 1 -0.3633 -0.9269 -0.4438 30 1 -0.3633 0.0791 1.0246 31 1 0.6341 2.2662 1.1656 32 1 1.6915 4.4900 1.1576 33 1 3.8380 4.8284 -0.0003 34 1 4.9223 2.9455 -1.1589 35 1 3.8608 0.7237 -1.1580 36 1 1.6119 -1.8585 -1.2683 37 1 3.1720 -0.8751 -1.2677 38 1 3.2517 -1.8994 6.1396 39 1 4.7087 -0.1872 4.4637 40 1 5.6006 -0.4981 2.9549 41 1 5.0069 1.7663 2.1374 42 1 4.1150 2.0772 3.6461 43 1 7.4405 3.4915 4.2708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599938768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:38 Heat of formation + Delta-G solvation = -75.749317 kcal Electronic energy + Delta-G solvation = -27971.004726 eV Core-core repulsion = 24174.967175 eV Total energy + Delta-G solvation = -3796.037551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00176 -39.68168 -38.17201 -36.42786 -35.71235 -34.77297 -31.93473 -30.73266 -30.57013 -30.07055 -28.16516 -25.22886 -24.69990 -22.79666 -22.44010 -21.74740 -20.28612 -19.36750 -18.80322 -17.74389 -17.31501 -16.26650 -15.91276 -15.80111 -15.39915 -14.89443 -14.61110 -14.43285 -14.20881 -13.93344 -13.45710 -13.19377 -13.09423 -12.92562 -12.63389 -12.41303 -12.28721 -12.16866 -11.79619 -11.66229 -11.32934 -11.21982 -11.12327 -11.03876 -10.80132 -10.65023 -10.55492 -10.38571 -10.11261 -10.03753 -9.72660 -9.67681 -9.16185 -8.51571 -8.49979 -8.09205 -7.49577 -6.37479 -4.12502 1.72619 1.81764 2.69566 3.07297 3.18979 3.21361 3.42858 3.68777 4.07238 4.15818 4.45800 4.66817 4.94213 5.06072 5.22972 5.26871 5.33536 5.46283 5.49309 5.56496 5.65494 5.83033 5.85035 5.94204 6.02254 6.07394 6.12538 6.13308 6.21105 6.32755 6.37634 6.40673 6.45267 6.54042 6.68476 6.84448 6.87612 6.90595 6.93290 7.08035 7.32792 7.39649 7.50426 7.94721 8.32591 8.37308 9.05989 9.48695 9.92497 10.65240 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008999 B = 0.007512 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.765276 B = 3726.580488 C = 5140.985940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.035 4.035 4 C -0.103 4.103 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.103 4.103 9 C -0.156 4.156 10 C -0.127 4.127 11 H 0.123 0.877 12 C 0.509 3.491 13 O -0.599 6.599 14 N -0.431 5.431 15 C -0.337 4.337 16 H 0.090 0.910 17 C 0.045 3.955 18 N -0.859 5.859 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.280 1.280 23 C 0.129 3.871 24 C -0.121 4.121 25 C 0.482 3.518 26 O -0.515 6.515 27 O -0.524 6.524 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.271 0.729 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 8.473 -7.133 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.035 4.035 4 C -0.122 4.122 5 C -0.142 4.142 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.120 4.120 9 C -0.193 4.193 10 C -0.148 4.148 11 H 0.141 0.859 12 C 0.297 3.703 13 O -0.484 6.484 14 N -0.148 5.148 15 C -0.465 4.465 16 H 0.108 0.892 17 C -0.162 4.162 18 N -0.495 5.495 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.206 1.206 23 C 0.005 3.995 24 C -0.160 4.160 25 C 0.325 3.675 26 O -0.402 6.402 27 O -0.335 6.335 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.273 8.050 -7.220 11.297 hybrid contribution -0.146 0.304 1.222 1.268 sum -3.419 8.353 -5.997 10.837 Atomic orbital electron populations 1.21328 0.91526 1.01641 1.02223 1.20170 0.94152 0.88117 1.05506 1.18984 0.94601 0.92950 0.96992 1.20903 1.00296 0.92364 0.98587 1.21010 0.96117 0.97053 1.00054 1.21025 0.95957 0.98641 0.98954 1.21032 0.99596 0.93155 1.00321 1.21140 0.94732 0.97104 0.99057 1.23213 1.02266 0.99698 0.94145 1.22192 0.98463 1.00858 0.93247 0.85940 1.19457 0.88333 0.78941 0.83534 1.90518 1.32626 1.58075 1.67206 1.43173 1.07525 1.55459 1.08684 1.19407 0.87772 1.44443 0.94862 0.89222 1.25471 0.97589 0.94646 0.98473 1.69839 1.31858 1.29607 1.18165 0.86125 0.81272 0.78614 0.80258 1.19061 1.20678 1.20579 1.21126 0.87704 0.88250 1.02465 1.21839 0.91513 1.01266 1.01375 1.23837 0.87647 0.79009 0.77030 1.90701 1.54706 1.53285 1.41541 1.84600 1.45069 1.30322 1.73547 0.92292 0.92268 0.91663 0.86273 0.86611 0.86797 0.86707 0.85722 0.88624 0.87918 0.91888 0.86971 0.91719 0.88691 0.87969 0.74270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 8.85 37.16 0.33 -1.14 16 2 C -0.08 -1.28 2.56 -155.66 -0.40 -1.68 16 3 C -0.04 -0.59 4.70 -104.63 -0.49 -1.09 16 4 C -0.10 -1.62 9.23 -39.58 -0.37 -1.99 16 5 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 6 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 7 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 8 C -0.10 -1.74 8.28 -39.58 -0.33 -2.07 16 9 C -0.16 -2.53 9.03 -26.73 -0.24 -2.77 16 10 C -0.13 -2.46 4.44 -91.77 -0.41 -2.87 16 11 H 0.12 2.37 8.05 -51.93 -0.42 1.96 16 12 C 0.51 11.88 5.89 -10.98 -0.06 11.82 16 13 O -0.60 -15.20 15.38 5.55 0.09 -15.12 16 14 N -0.43 -10.42 2.50 -114.81 -0.29 -10.71 16 15 C -0.34 -8.10 8.54 -14.93 -0.13 -8.23 16 16 H 0.09 2.07 7.42 -52.49 -0.39 1.68 16 17 C 0.04 1.10 5.03 -17.47 -0.09 1.01 16 18 N -0.86 -22.65 11.45 55.50 0.64 -22.01 16 19 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 C 0.13 3.11 4.32 -4.04 -0.02 3.09 16 24 C -0.12 -2.46 6.13 -27.88 -0.17 -2.63 16 25 C 0.48 9.16 8.33 36.01 0.30 9.46 16 26 O -0.51 -11.27 16.74 -18.76 -0.31 -11.59 16 27 O -0.52 -7.75 13.42 -39.24 -0.53 -8.28 16 28 H 0.06 0.71 7.95 -51.93 -0.41 0.29 16 29 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.12 1.74 7.44 -52.48 -0.39 1.35 16 32 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.12 2.19 5.76 -52.49 -0.30 1.89 16 36 H 0.10 1.29 8.05 -51.93 -0.42 0.88 16 37 H 0.10 1.76 5.74 -51.93 -0.30 1.46 16 38 H 0.27 6.79 8.32 -40.82 -0.34 6.45 16 39 H 0.11 2.96 5.58 -51.93 -0.29 2.67 16 40 H 0.06 1.69 7.33 -51.93 -0.38 1.31 16 41 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 42 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 43 H 0.40 3.96 9.10 45.56 0.41 4.38 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -30.58 363.10 -8.20 -38.78 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -4.97 Total: 15.25 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -3.27 Total: -5.73 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.35 Total: -32.72 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.76 Total: -34.98 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.58 -8.20 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599938768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.973 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds