Wall clock time and date at job start Tue Mar 31 2020 12:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 115.54937 * 2 1 4 4 C 1.38236 * 120.00299 * 33.11814 * 3 2 1 5 5 C 1.38236 * 120.00016 * 180.25513 * 4 3 2 6 6 C 1.38234 * 120.00116 * 359.50974 * 5 4 3 7 7 C 1.38236 * 119.99915 * 0.27655 * 6 5 4 8 8 C 1.38236 * 119.99997 * 359.95487 * 7 6 5 9 9 C 1.53004 * 117.51328 * 214.30054 * 2 1 3 10 10 C 1.52993 * 117.49624 * 145.67288 * 2 1 3 11 11 H 1.09000 * 117.50294 * 359.97438 * 10 2 1 12 12 C 1.50704 * 117.49942 * 214.99795 * 10 2 1 13 13 O 1.21288 * 119.99998 * 272.00898 * 12 10 2 14 14 N 1.34779 * 119.99605 * 92.00909 * 12 10 2 15 15 C 1.37094 * 120.00254 * 4.27710 * 14 12 10 16 16 H 1.08002 * 120.00104 * 318.85070 * 15 14 12 17 17 C 1.38951 * 119.99812 * 138.84386 * 15 14 12 18 18 N 1.31414 * 120.00324 * 342.92269 * 17 15 14 19 19 Si 1.86805 * 119.99870 * 162.92108 * 17 15 14 20 20 H 1.48494 * 109.47153 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47082 * 120.00289 * 19 17 15 22 22 H 1.48496 * 109.47187 * 240.00111 * 19 17 15 23 23 C 1.46502 * 119.99814 * 184.28135 * 14 12 10 24 24 C 1.52998 * 109.47136 * 89.99865 * 23 14 12 25 25 C 1.50700 * 109.47241 * 179.97438 * 24 23 14 26 26 O 1.20833 * 119.99738 * 0.02562 * 25 24 23 27 27 O 1.34224 * 120.00271 * 179.97438 * 25 24 23 28 28 H 1.09005 * 109.46938 * 34.41802 * 1 2 3 29 29 H 1.09000 * 109.46899 * 154.41386 * 1 2 3 30 30 H 1.09001 * 109.46802 * 274.41506 * 1 2 3 31 31 H 1.08006 * 119.99846 * 0.03611 * 4 3 2 32 32 H 1.08004 * 120.00111 * 179.78163 * 5 4 3 33 33 H 1.07998 * 119.99833 * 180.25782 * 6 5 4 34 34 H 1.07998 * 119.99988 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.99869 * 180.02562 * 8 7 6 36 36 H 1.08996 * 117.50029 * 0.02562 * 9 2 1 37 37 H 1.08998 * 117.49530 * 145.03119 * 9 2 1 38 38 H 0.96993 * 120.00169 * 185.08570 * 18 17 15 39 39 H 1.08998 * 109.47040 * 209.99759 * 23 14 12 40 40 H 1.09004 * 109.46986 * 330.00044 * 23 14 12 41 41 H 1.08998 * 109.47070 * 299.99876 * 24 23 14 42 42 H 1.09004 * 109.47037 * 60.00210 * 24 23 14 43 43 H 0.96699 * 116.99906 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 1.5735 2.4156 0.6541 5 6 2.1671 3.6641 0.6496 6 6 3.3722 3.8540 -0.0004 7 6 3.9809 2.7969 -0.6507 8 6 3.3850 1.5497 -0.6503 9 6 2.2369 -1.1210 -0.7647 10 6 2.2364 -1.1207 0.7653 11 1 1.6112 -1.8579 1.2692 12 6 3.5290 -0.7806 1.4614 13 8 4.5805 -0.8644 0.8628 14 7 3.5165 -0.3834 2.7493 15 6 2.3394 -0.3726 3.4520 16 1 1.4321 -0.0252 2.9803 17 6 2.3137 -0.8089 4.7710 18 7 3.3035 -1.5330 5.2430 19 14 0.8721 -0.3659 5.8733 20 1 -0.1041 0.4502 5.1076 21 1 0.2125 -1.6085 6.3489 22 1 1.3615 0.4123 7.0395 23 6 4.7608 0.0371 3.3983 24 6 4.9548 1.5420 3.2027 25 6 6.2344 1.9747 3.8708 26 8 6.9212 1.1624 4.4441 27 8 6.6119 3.2620 3.8282 28 1 -0.3633 0.8478 -0.5809 29 1 -0.3633 -0.9269 -0.4438 30 1 -0.3633 0.0791 1.0246 31 1 0.6341 2.2662 1.1656 32 1 1.6915 4.4900 1.1576 33 1 3.8380 4.8284 -0.0003 34 1 4.9223 2.9455 -1.1589 35 1 3.8608 0.7237 -1.1580 36 1 1.6119 -1.8585 -1.2683 37 1 3.1720 -0.8751 -1.2677 38 1 3.2517 -1.8994 6.1396 39 1 4.7087 -0.1872 4.4637 40 1 5.6006 -0.4981 2.9549 41 1 5.0069 1.7663 2.1374 42 1 4.1150 2.0772 3.6461 43 1 7.4405 3.4915 4.2708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599938768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:37 Heat of formation + Delta-G solvation = -92.561366 kcal Electronic energy + Delta-G solvation = -27971.733752 eV Core-core repulsion = 24174.967175 eV Total energy + Delta-G solvation = -3796.766577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51039 -41.13286 -39.68229 -37.82855 -37.15803 -36.61301 -33.79177 -32.33157 -31.89317 -31.30225 -29.30684 -27.06676 -26.40775 -23.97325 -23.91759 -23.00027 -21.86902 -20.96441 -20.26909 -19.25727 -18.79328 -17.91866 -17.53834 -17.30925 -16.96913 -16.37192 -16.11632 -15.95550 -15.59211 -15.37470 -14.96481 -14.66948 -14.32212 -14.24659 -14.14349 -13.96251 -13.72173 -13.47556 -13.27549 -12.97253 -12.84790 -12.78486 -12.65047 -12.58742 -12.48995 -12.05417 -11.98357 -11.83088 -11.74928 -11.68703 -11.09794 -11.06076 -10.89939 -10.32287 -9.67654 -9.41151 -9.32595 -8.24404 -6.05032 0.54404 0.63896 1.15093 1.42513 1.49813 1.61590 1.90948 2.06405 2.38194 2.80429 3.00536 3.11258 3.24449 3.79952 3.92148 4.00691 4.03967 4.08865 4.11081 4.25145 4.32726 4.37658 4.47702 4.63667 4.68927 4.72616 4.79476 4.92443 4.93979 5.01046 5.04091 5.06514 5.23484 5.25662 5.31681 5.35179 5.41105 5.54125 5.60243 5.72928 5.73753 5.88087 6.09119 6.24762 6.47313 6.97279 7.17925 7.63917 8.07960 8.79563 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008999 B = 0.007512 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.765276 B = 3726.580488 C = 5140.985940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.060 4.060 3 C -0.056 4.056 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.133 4.133 8 C -0.123 4.123 9 C -0.145 4.145 10 C -0.157 4.157 11 H 0.120 0.880 12 C 0.502 3.498 13 O -0.630 6.630 14 N -0.442 5.442 15 C -0.336 4.336 16 H 0.102 0.898 17 C 0.000 4.000 18 N -0.902 5.902 19 Si 0.977 3.023 20 H -0.246 1.246 21 H -0.283 1.283 22 H -0.285 1.285 23 C 0.135 3.865 24 C -0.108 4.108 25 C 0.494 3.506 26 O -0.549 6.549 27 O -0.505 6.505 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.269 0.731 39 H 0.089 0.911 40 H 0.030 0.970 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 10.919 -7.478 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.061 4.061 3 C -0.056 4.056 4 C -0.131 4.131 5 C -0.142 4.142 6 C -0.143 4.143 7 C -0.151 4.151 8 C -0.141 4.141 9 C -0.182 4.182 10 C -0.178 4.178 11 H 0.138 0.862 12 C 0.293 3.707 13 O -0.517 6.517 14 N -0.159 5.159 15 C -0.463 4.463 16 H 0.120 0.880 17 C -0.203 4.203 18 N -0.539 5.539 19 Si 0.801 3.199 20 H -0.169 1.169 21 H -0.209 1.209 22 H -0.211 1.211 23 C 0.011 3.989 24 C -0.146 4.146 25 C 0.338 3.662 26 O -0.440 6.440 27 O -0.318 6.318 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.145 0.855 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -5.383 10.535 -7.582 14.052 hybrid contribution 0.627 -0.398 1.268 1.470 sum -4.756 10.137 -6.314 12.855 Atomic orbital electron populations 1.21368 0.88924 1.03380 1.02680 1.20356 0.95843 0.87312 1.02571 1.19155 0.94925 0.93618 0.97923 1.21129 1.00845 0.92653 0.98505 1.21379 0.96026 0.97328 0.99482 1.21366 0.95807 0.99383 0.97752 1.21274 1.00204 0.92995 1.00661 1.21155 0.95361 0.97484 1.00101 1.23306 1.02343 1.00610 0.91913 1.22073 0.97323 1.03551 0.94820 0.86232 1.20119 0.89498 0.77896 0.83230 1.90481 1.34255 1.59226 1.67763 1.43373 1.07484 1.55926 1.09110 1.19695 0.87960 1.43743 0.94919 0.88049 1.26306 1.00034 0.94261 0.99670 1.69986 1.34147 1.31337 1.18453 0.85107 0.78451 0.78229 0.78130 1.16862 1.20910 1.21118 1.20841 0.86962 0.90557 1.00563 1.21527 0.92947 0.98618 1.01543 1.23395 0.86803 0.79912 0.76140 1.90704 1.55591 1.54629 1.43103 1.84505 1.46647 1.27372 1.73278 0.90629 0.90513 0.91760 0.85207 0.83848 0.83988 0.85525 0.87528 0.85547 0.89363 0.92140 0.89342 0.95103 0.88787 0.87012 0.71222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 8.85 71.98 0.64 -1.90 16 2 C -0.06 -1.88 2.56 -52.93 -0.14 -2.02 16 3 C -0.06 -1.83 4.70 -19.87 -0.09 -1.92 16 4 C -0.11 -3.30 9.23 22.27 0.21 -3.09 16 5 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 6 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 7 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16 8 C -0.12 -4.17 8.28 22.27 0.18 -3.98 16 9 C -0.14 -4.62 9.03 30.60 0.28 -4.35 16 10 C -0.16 -6.10 4.44 -11.54 -0.05 -6.15 16 11 H 0.12 4.65 8.05 -2.39 -0.02 4.63 16 12 C 0.50 24.18 5.89 87.66 0.52 24.69 16 13 O -0.63 -33.48 15.38 -3.06 -0.05 -33.53 16 14 N -0.44 -21.91 2.50 -635.53 -1.59 -23.49 16 15 C -0.34 -16.16 8.54 84.04 0.72 -15.44 16 16 H 0.10 4.57 7.42 -2.91 -0.02 4.55 16 17 C 0.00 -0.02 5.03 84.93 0.43 0.41 16 18 N -0.90 -48.98 11.45 21.66 0.25 -48.73 16 19 Si 0.98 38.38 29.59 68.60 2.03 40.41 16 20 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 21 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.29 -11.37 7.11 99.48 0.71 -10.67 16 23 C 0.14 6.81 4.32 86.38 0.37 7.19 16 24 C -0.11 -4.40 6.13 29.85 0.18 -4.21 16 25 C 0.49 18.53 8.33 71.24 0.59 19.12 16 26 O -0.55 -24.44 16.74 21.94 0.37 -24.07 16 27 O -0.50 -13.70 13.42 -51.36 -0.69 -14.39 16 28 H 0.07 1.56 7.95 -2.38 -0.02 1.54 16 29 H 0.08 1.55 7.90 -2.39 -0.02 1.54 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.13 3.42 7.44 -2.91 -0.02 3.39 16 32 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.11 3.91 5.76 -2.91 -0.02 3.90 16 36 H 0.13 3.18 8.05 -2.39 -0.02 3.16 16 37 H 0.09 3.10 5.74 -2.39 -0.01 3.08 16 38 H 0.27 13.93 8.32 -92.71 -0.77 13.16 16 39 H 0.09 4.90 5.58 -2.39 -0.01 4.88 16 40 H 0.03 1.71 7.33 -2.38 -0.02 1.69 16 41 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 42 H 0.11 4.34 8.14 -2.38 -0.02 4.32 16 43 H 0.43 7.19 9.10 -74.06 -0.67 6.52 16 Total: -1.00 -68.89 363.10 5.19 -63.70 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: 0.37 Total: 41.38 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.50 Total: -1.27 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -1.34 Total: -72.23 kcal Atomic # 8 Polarization: -71.63 SS G_CDS: -0.37 Total: -72.00 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -68.89 5.19 -63.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599938768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.861 kcal (2) G-P(sol) polarization free energy of solvation -68.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds