Wall clock time and date at job start Tue Mar 31 2020 11:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38098 * 119.84523 * 2 1 4 4 C 1.39728 * 120.15517 * 180.02562 * 3 2 1 5 5 C 1.47745 * 120.08057 * 179.97438 * 4 3 2 6 6 O 1.21467 * 120.00224 * 185.50663 * 5 4 3 7 7 O 1.34705 * 119.99790 * 5.50219 * 5 4 3 8 8 C 1.39374 * 119.84705 * 359.69704 * 4 3 2 9 9 C 1.39359 * 119.69009 * 0.55579 * 8 4 3 10 10 C 1.47750 * 120.07422 * 179.74969 * 9 8 4 11 11 O 1.21587 * 119.99459 * 239.62752 * 10 9 8 12 12 N 1.34773 * 119.99820 * 59.62783 * 10 9 8 13 13 C 1.36876 * 119.99394 * 185.83080 * 12 10 9 14 14 H 1.08003 * 120.00120 * 226.70114 * 13 12 10 15 15 C 1.39046 * 120.00202 * 46.70671 * 13 12 10 16 16 N 1.31368 * 119.99738 * 21.08650 * 15 13 12 17 17 Si 1.86798 * 120.00357 * 201.08210 * 15 13 12 18 18 H 1.48497 * 109.46807 * 5.01290 * 17 15 13 19 19 H 1.48502 * 109.47260 * 125.01219 * 17 15 13 20 20 H 1.48499 * 109.47300 * 245.01327 * 17 15 13 21 21 C 1.46494 * 120.00478 * 5.83579 * 12 10 9 22 22 C 1.54262 * 110.03513 * 128.99313 * 21 12 10 23 23 C 1.54971 * 104.15934 * 95.75473 * 22 21 12 24 24 C 1.54889 * 102.77349 * 37.88946 * 23 22 21 25 25 C 1.53873 * 110.03116 * 246.21513 * 21 12 10 26 26 C 1.38042 * 119.84555 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46933 * 269.97493 * 1 2 3 28 28 H 1.09004 * 109.47057 * 29.97492 * 1 2 3 29 29 H 1.09004 * 109.47339 * 149.98032 * 1 2 3 30 30 H 1.08001 * 119.92647 * 0.02562 * 3 2 1 31 31 H 0.96699 * 117.00022 * 180.02562 * 7 5 4 32 32 H 1.07994 * 120.15901 * 180.30194 * 8 4 3 33 33 H 0.96998 * 119.99938 * 184.94600 * 16 15 13 34 34 H 1.09004 * 110.01538 * 7.60076 * 21 12 10 35 35 H 1.08997 * 110.48857 * 214.40192 * 22 21 12 36 36 H 1.09001 * 110.48867 * 337.04693 * 22 21 12 37 37 H 1.09003 * 110.71959 * 279.57722 * 23 22 21 38 38 H 1.08996 * 110.92121 * 156.29619 * 23 22 21 39 39 H 1.09004 * 110.48274 * 203.40234 * 24 23 22 40 40 H 1.09002 * 110.60073 * 80.82038 * 24 23 22 41 41 H 1.08994 * 110.03516 * 359.94543 * 25 21 12 42 42 H 1.09003 * 110.03294 * 121.33244 * 25 21 12 43 43 H 1.07998 * 119.92435 * 359.95000 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1978 0.0000 4 6 3.5916 1.2054 -0.0005 5 6 4.3252 2.4878 -0.0011 6 8 5.5356 2.4951 -0.1025 7 8 3.6516 3.6491 0.1107 8 6 4.2917 0.0003 0.0053 9 6 3.5918 -1.2047 -0.0001 10 6 4.3255 -2.4872 0.0005 11 8 4.1690 -3.2774 -0.9103 12 7 5.1681 -2.7810 1.0105 13 6 5.9369 -3.9120 0.9532 14 1 6.0014 -4.5652 1.8108 15 6 6.6349 -4.2200 -0.2093 16 7 6.9060 -3.2764 -1.0821 17 14 7.1874 -5.9754 -0.5297 18 1 6.6578 -6.8633 0.5362 19 1 6.6724 -6.4235 -1.8485 20 1 8.6712 -6.0348 -0.5316 21 6 5.2610 -1.8901 2.1697 22 6 5.1023 -2.7001 3.4729 23 6 6.5579 -2.9877 3.9202 24 6 7.2935 -1.6738 3.5573 25 6 6.6537 -1.2381 2.2229 26 6 2.1940 -1.1973 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6506 2.1310 0.0004 31 1 4.1748 4.4623 0.1051 32 1 5.3717 0.0003 0.0098 33 1 7.3290 -3.5026 -1.9252 34 1 4.4907 -1.1210 2.1118 35 1 4.5809 -2.1109 4.2272 36 1 4.5703 -3.6319 3.2805 37 1 6.9729 -3.8288 3.3649 38 1 6.6058 -3.1736 4.9931 39 1 8.3601 -1.8573 3.4271 40 1 7.1285 -0.9174 4.3246 41 1 7.2608 -1.5852 1.3869 42 1 6.5594 -0.1526 2.1902 43 1 1.6503 -2.1305 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600107523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:10 Heat of formation + Delta-G solvation = -103.190284 kcal Electronic energy + Delta-G solvation = -27582.486081 eV Core-core repulsion = 23785.258600 eV Total energy + Delta-G solvation = -3797.227481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36978 -39.34872 -38.08823 -36.53356 -36.03221 -33.27436 -32.80946 -31.72143 -30.81159 -28.03847 -27.07579 -26.77197 -25.10269 -24.53580 -22.64556 -20.46028 -20.11436 -19.83377 -19.20687 -18.00087 -17.19781 -16.16460 -15.85867 -15.71338 -15.56259 -15.13997 -15.03572 -14.49789 -14.19576 -13.79358 -13.56782 -13.39438 -13.10247 -13.00280 -12.61172 -12.42546 -12.08688 -11.91413 -11.59458 -11.50552 -11.34084 -11.26490 -10.94838 -10.79147 -10.63276 -10.55608 -10.47708 -10.39336 -10.37453 -10.26254 -10.06057 -9.78323 -8.80495 -8.69091 -8.53152 -8.18618 -7.18955 -6.17525 -3.90367 0.86996 1.44951 2.64934 3.03814 3.30177 3.41089 3.42278 3.79624 4.23164 4.31431 4.73713 4.83220 5.08461 5.14964 5.22296 5.29876 5.34045 5.43909 5.51560 5.55747 5.61100 5.65668 5.73062 5.89254 6.00896 6.05314 6.15122 6.19044 6.28373 6.28906 6.38577 6.42462 6.48786 6.52068 6.57818 6.60746 6.67979 6.77634 6.93422 6.96061 7.03851 7.28282 7.63827 7.94819 8.26386 9.00251 9.09965 9.57840 10.18506 10.90210 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.005184 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.343485 B = 5399.766236 C = 6005.830967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.108 4.108 3 C -0.067 4.067 4 C -0.134 4.134 5 C 0.527 3.473 6 O -0.508 6.508 7 O -0.516 6.516 8 C -0.030 4.030 9 C -0.094 4.094 10 C 0.518 3.482 11 O -0.540 6.540 12 N -0.432 5.432 13 C -0.334 4.334 14 H 0.083 0.917 15 C 0.076 3.924 16 N -0.835 5.835 17 Si 0.904 3.096 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.286 1.286 21 C 0.127 3.873 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.054 4.054 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.410 0.590 32 H 0.143 0.857 33 H 0.266 0.734 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 10.215 6.684 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.086 4.086 4 C -0.135 4.135 5 C 0.372 3.628 6 O -0.397 6.397 7 O -0.327 6.327 8 C -0.049 4.049 9 C -0.097 4.097 10 C 0.305 3.695 11 O -0.420 6.420 12 N -0.152 5.152 13 C -0.460 4.460 14 H 0.101 0.899 15 C -0.135 4.135 16 N -0.469 5.469 17 Si 0.730 3.270 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.212 1.212 21 C 0.022 3.978 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.169 4.169 26 C -0.073 4.073 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.268 0.732 32 H 0.161 0.839 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.226 9.486 6.047 13.936 hybrid contribution 0.800 -0.052 -0.377 0.886 sum -7.426 9.434 5.671 13.278 Atomic orbital electron populations 1.20751 0.90601 1.02878 1.02345 1.19758 0.96358 0.92526 1.02180 1.21248 0.92413 0.98151 0.96762 1.18892 0.93583 0.89885 1.11137 1.20965 0.85502 0.84164 0.72189 1.90916 1.15211 1.87848 1.45735 1.84557 1.45367 1.17080 1.85739 1.21530 1.01221 0.89487 0.92658 1.20528 0.94085 0.95223 0.99888 1.17836 0.80727 0.85283 0.85670 1.90631 1.65811 1.49425 1.36092 1.43278 1.34403 1.21287 1.16264 1.18902 1.25227 1.00294 1.01619 0.89937 1.25259 0.93524 0.97740 0.96957 1.69858 1.36531 1.32239 1.08243 0.86301 0.77502 0.84436 0.78718 1.19438 1.20709 1.21245 1.21781 0.96359 0.91762 0.87919 1.22565 0.97136 1.00308 0.96263 1.22509 0.95538 0.98597 0.98955 1.22227 0.99297 0.96872 0.96939 1.22519 0.97290 0.98286 0.98784 1.21354 0.92964 0.97989 0.94972 0.91159 0.91532 0.91313 0.84856 0.73151 0.83879 0.92418 0.91720 0.92598 0.91128 0.90130 0.93224 0.92428 0.93091 0.89055 0.93284 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.00 36.01 0.36 -0.72 16 2 C -0.11 -1.48 5.87 -104.74 -0.61 -2.10 16 3 C -0.07 -0.92 9.26 -39.08 -0.36 -1.28 16 4 C -0.13 -2.16 5.87 -105.03 -0.62 -2.78 16 5 C 0.53 8.01 8.26 34.62 0.29 8.30 16 6 O -0.51 -9.35 17.14 -19.24 -0.33 -9.68 16 7 O -0.52 -5.54 12.68 -40.51 -0.51 -6.05 16 8 C -0.03 -0.58 7.66 -38.74 -0.30 -0.88 16 9 C -0.09 -1.91 4.34 -105.02 -0.46 -2.37 16 10 C 0.52 12.99 6.30 -12.37 -0.08 12.91 16 11 O -0.54 -15.79 15.54 5.29 0.08 -15.71 16 12 N -0.43 -10.39 2.33 -107.64 -0.25 -10.64 16 13 C -0.33 -8.69 7.19 -15.00 -0.11 -8.79 16 14 H 0.08 2.08 6.02 -52.48 -0.32 1.76 16 15 C 0.08 2.06 4.32 -17.45 -0.08 1.99 16 16 N -0.84 -24.07 12.38 55.50 0.69 -23.39 16 17 Si 0.90 21.56 29.61 -169.99 -5.03 16.53 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.13 2.51 2.73 -66.82 -0.18 2.33 16 22 C -0.12 -2.17 5.90 -25.03 -0.15 -2.31 16 23 C -0.12 -1.98 6.53 -24.69 -0.16 -2.14 16 24 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 25 C -0.13 -2.54 6.08 -25.61 -0.16 -2.69 16 26 C -0.05 -0.91 9.42 -39.08 -0.37 -1.28 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.13 1.46 7.61 -52.49 -0.40 1.06 16 31 H 0.41 2.47 9.11 45.56 0.42 2.89 16 32 H 0.14 3.10 7.39 -52.49 -0.39 2.71 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 1.23 5.62 -51.93 -0.29 0.93 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.31 7.59 -51.93 -0.39 0.92 16 37 H 0.08 1.51 6.48 -51.93 -0.34 1.17 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 2.14 7.59 -51.93 -0.39 1.74 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -33.40 356.34 -8.17 -41.58 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.04 Total: 5.89 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.15 Total: -3.90 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.44 Total: -34.02 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.76 Total: -31.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.40 -8.17 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600107523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.614 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds