Wall clock time and date at job start Tue Mar 31 2020 11:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38098 * 119.84523 * 2 1 4 4 C 1.39728 * 120.15517 * 180.02562 * 3 2 1 5 5 C 1.47745 * 120.08057 * 179.97438 * 4 3 2 6 6 O 1.21467 * 120.00224 * 185.50663 * 5 4 3 7 7 O 1.34705 * 119.99790 * 5.50219 * 5 4 3 8 8 C 1.39374 * 119.84705 * 359.69704 * 4 3 2 9 9 C 1.39359 * 119.69009 * 0.55579 * 8 4 3 10 10 C 1.47750 * 120.07422 * 179.74969 * 9 8 4 11 11 O 1.21587 * 119.99459 * 239.62752 * 10 9 8 12 12 N 1.34773 * 119.99820 * 59.62783 * 10 9 8 13 13 C 1.36876 * 119.99394 * 185.83080 * 12 10 9 14 14 H 1.08003 * 120.00120 * 226.70114 * 13 12 10 15 15 C 1.39046 * 120.00202 * 46.70671 * 13 12 10 16 16 N 1.31368 * 119.99738 * 21.08650 * 15 13 12 17 17 Si 1.86798 * 120.00357 * 201.08210 * 15 13 12 18 18 H 1.48497 * 109.46807 * 5.01290 * 17 15 13 19 19 H 1.48502 * 109.47260 * 125.01219 * 17 15 13 20 20 H 1.48499 * 109.47300 * 245.01327 * 17 15 13 21 21 C 1.46494 * 120.00478 * 5.83579 * 12 10 9 22 22 C 1.54262 * 110.03513 * 128.99313 * 21 12 10 23 23 C 1.54971 * 104.15934 * 95.75473 * 22 21 12 24 24 C 1.54889 * 102.77349 * 37.88946 * 23 22 21 25 25 C 1.53873 * 110.03116 * 246.21513 * 21 12 10 26 26 C 1.38042 * 119.84555 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46933 * 269.97493 * 1 2 3 28 28 H 1.09004 * 109.47057 * 29.97492 * 1 2 3 29 29 H 1.09004 * 109.47339 * 149.98032 * 1 2 3 30 30 H 1.08001 * 119.92647 * 0.02562 * 3 2 1 31 31 H 0.96699 * 117.00022 * 180.02562 * 7 5 4 32 32 H 1.07994 * 120.15901 * 180.30194 * 8 4 3 33 33 H 0.96998 * 119.99938 * 184.94600 * 16 15 13 34 34 H 1.09004 * 110.01538 * 7.60076 * 21 12 10 35 35 H 1.08997 * 110.48857 * 214.40192 * 22 21 12 36 36 H 1.09001 * 110.48867 * 337.04693 * 22 21 12 37 37 H 1.09003 * 110.71959 * 279.57722 * 23 22 21 38 38 H 1.08996 * 110.92121 * 156.29619 * 23 22 21 39 39 H 1.09004 * 110.48274 * 203.40234 * 24 23 22 40 40 H 1.09002 * 110.60073 * 80.82038 * 24 23 22 41 41 H 1.08994 * 110.03516 * 359.94543 * 25 21 12 42 42 H 1.09003 * 110.03294 * 121.33244 * 25 21 12 43 43 H 1.07998 * 119.92435 * 359.95000 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1978 0.0000 4 6 3.5916 1.2054 -0.0005 5 6 4.3252 2.4878 -0.0011 6 8 5.5356 2.4951 -0.1025 7 8 3.6516 3.6491 0.1107 8 6 4.2917 0.0003 0.0053 9 6 3.5918 -1.2047 -0.0001 10 6 4.3255 -2.4872 0.0005 11 8 4.1690 -3.2774 -0.9103 12 7 5.1681 -2.7810 1.0105 13 6 5.9369 -3.9120 0.9532 14 1 6.0014 -4.5652 1.8108 15 6 6.6349 -4.2200 -0.2093 16 7 6.9060 -3.2764 -1.0821 17 14 7.1874 -5.9754 -0.5297 18 1 6.6578 -6.8633 0.5362 19 1 6.6724 -6.4235 -1.8485 20 1 8.6712 -6.0348 -0.5316 21 6 5.2610 -1.8901 2.1697 22 6 5.1023 -2.7001 3.4729 23 6 6.5579 -2.9877 3.9202 24 6 7.2935 -1.6738 3.5573 25 6 6.6537 -1.2381 2.2229 26 6 2.1940 -1.1973 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6506 2.1310 0.0004 31 1 4.1748 4.4623 0.1051 32 1 5.3717 0.0003 0.0098 33 1 7.3290 -3.5026 -1.9252 34 1 4.4907 -1.1210 2.1118 35 1 4.5809 -2.1109 4.2272 36 1 4.5703 -3.6319 3.2805 37 1 6.9729 -3.8288 3.3649 38 1 6.6058 -3.1736 4.9931 39 1 8.3601 -1.8573 3.4271 40 1 7.1285 -0.9174 4.3246 41 1 7.2608 -1.5852 1.3869 42 1 6.5594 -0.1526 2.1902 43 1 1.6503 -2.1305 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600107523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:10 Heat of formation + Delta-G solvation = -124.344120 kcal Electronic energy + Delta-G solvation = -27583.403380 eV Core-core repulsion = 23785.258600 eV Total energy + Delta-G solvation = -3798.144780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66785 -40.86481 -39.47917 -38.25936 -37.12330 -35.18475 -34.12245 -33.40297 -32.34390 -29.51718 -28.66966 -27.85459 -26.92037 -25.78150 -24.24962 -21.74909 -21.54769 -21.29791 -20.91413 -19.28148 -18.57357 -17.84115 -17.38039 -17.10159 -16.94713 -16.70051 -16.52100 -16.10675 -15.80347 -15.39207 -14.85249 -14.63069 -14.50838 -14.30963 -14.18887 -13.97851 -13.43988 -13.08828 -12.96363 -12.90938 -12.73656 -12.67738 -12.59124 -12.46128 -12.36173 -12.17686 -12.10269 -11.83700 -11.81568 -11.71344 -11.59104 -11.31170 -10.70937 -10.36786 -10.03448 -9.70525 -9.16649 -8.24449 -5.99830 -0.40992 0.11453 1.33794 1.41245 1.42881 1.50288 1.91430 2.20979 2.39293 2.68373 3.01665 3.23970 3.70301 3.78928 3.83653 3.93793 3.96805 4.06219 4.17572 4.25547 4.38302 4.55199 4.59944 4.68210 4.71983 4.79797 4.87094 4.87951 4.93415 4.94178 5.07754 5.13884 5.18217 5.25581 5.27171 5.35409 5.39605 5.45548 5.49495 5.53453 5.58387 5.71749 5.78347 6.23320 6.94377 7.00122 7.13870 7.61337 8.23727 8.83009 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.005184 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.343485 B = 5399.766236 C = 6005.830967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.090 4.090 3 C -0.043 4.043 4 C -0.137 4.137 5 C 0.538 3.462 6 O -0.550 6.550 7 O -0.493 6.493 8 C -0.046 4.046 9 C -0.120 4.120 10 C 0.507 3.493 11 O -0.598 6.598 12 N -0.441 5.441 13 C -0.334 4.334 14 H 0.088 0.912 15 C 0.024 3.976 16 N -0.876 5.876 17 Si 0.959 3.041 18 H -0.255 1.255 19 H -0.296 1.296 20 H -0.276 1.276 21 C 0.122 3.878 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.059 4.059 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.177 0.823 31 H 0.435 0.565 32 H 0.105 0.895 33 H 0.258 0.742 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.145 12.465 9.042 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.090 4.090 3 C -0.061 4.061 4 C -0.138 4.138 5 C 0.383 3.617 6 O -0.442 6.442 7 O -0.306 6.306 8 C -0.066 4.066 9 C -0.124 4.124 10 C 0.296 3.704 11 O -0.482 6.482 12 N -0.160 5.160 13 C -0.462 4.462 14 H 0.106 0.894 15 C -0.182 4.182 16 N -0.512 5.512 17 Si 0.784 3.216 18 H -0.178 1.178 19 H -0.223 1.223 20 H -0.201 1.201 21 C 0.018 3.982 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.164 4.164 26 C -0.078 4.078 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.194 0.806 31 H 0.297 0.703 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.961 11.773 8.468 18.178 hybrid contribution 1.507 -0.574 -1.072 1.936 sum -9.454 11.199 7.396 16.417 Atomic orbital electron populations 1.20880 0.86956 1.04418 1.04157 1.20193 0.98633 0.90974 0.99226 1.21705 0.91028 0.99806 0.93520 1.18980 0.94870 0.89248 1.10728 1.20728 0.84705 0.84978 0.71259 1.90917 1.17054 1.88510 1.47726 1.84475 1.44768 1.16840 1.84549 1.21132 0.99511 0.90792 0.95137 1.20125 0.95410 0.93152 1.03684 1.18584 0.80598 0.86476 0.84693 1.90559 1.67840 1.51809 1.38008 1.43501 1.33737 1.21469 1.17266 1.19151 1.24417 1.01137 1.01476 0.89431 1.26064 0.94080 1.00866 0.97152 1.69992 1.38815 1.33819 1.08560 0.85439 0.77546 0.80662 0.77946 1.17813 1.22331 1.20149 1.21998 0.96771 0.91887 0.87537 1.22562 0.97941 0.99652 0.95497 1.22468 0.94611 0.97461 1.00693 1.22223 0.98921 0.97689 0.95743 1.22394 0.96619 0.98481 0.98863 1.21478 0.91382 0.99792 0.95162 0.89003 0.88860 0.91029 0.80592 0.70304 0.87653 0.93307 0.90841 0.89004 0.92668 0.92949 0.89647 0.92552 0.89782 0.94086 0.92699 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.00 71.24 0.71 -0.88 16 2 C -0.09 -2.17 5.87 -19.94 -0.12 -2.29 16 3 C -0.04 -0.99 9.26 22.60 0.21 -0.78 16 4 C -0.14 -4.25 5.87 -20.13 -0.12 -4.37 16 5 C 0.54 15.43 8.26 70.34 0.58 16.02 16 6 O -0.55 -20.39 17.14 19.94 0.34 -20.04 16 7 O -0.49 -8.60 12.68 -56.15 -0.71 -9.31 16 8 C -0.05 -1.87 7.66 22.81 0.17 -1.70 16 9 C -0.12 -5.13 4.34 -20.12 -0.09 -5.21 16 10 C 0.51 27.13 6.30 86.76 0.55 27.68 16 11 O -0.60 -37.48 15.54 -3.99 -0.06 -37.54 16 12 N -0.44 -22.40 2.33 -612.74 -1.43 -23.83 16 13 C -0.33 -18.33 7.19 84.10 0.60 -17.72 16 14 H 0.09 4.59 6.02 -2.91 -0.02 4.57 16 15 C 0.02 1.38 4.32 84.96 0.37 1.75 16 16 N -0.88 -54.36 12.38 21.68 0.27 -54.09 16 17 Si 0.96 46.45 29.61 68.60 2.03 48.48 16 18 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 C 0.12 4.97 2.73 45.71 0.12 5.09 16 22 C -0.12 -3.99 5.90 31.70 0.19 -3.80 16 23 C -0.11 -3.67 6.53 31.91 0.21 -3.46 16 24 C -0.11 -3.47 6.83 31.67 0.22 -3.26 16 25 C -0.12 -5.05 6.08 31.32 0.19 -4.86 16 26 C -0.06 -1.98 9.42 22.60 0.21 -1.77 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 30 H 0.18 2.68 7.61 -2.91 -0.02 2.65 16 31 H 0.43 3.50 9.11 -74.06 -0.67 2.82 16 32 H 0.11 4.99 7.39 -2.91 -0.02 4.97 16 33 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.07 2.84 5.62 -2.38 -0.01 2.82 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.05 2.03 7.59 -2.39 -0.02 2.01 16 37 H 0.05 1.96 6.48 -2.39 -0.02 1.95 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.04 2.07 7.59 -2.39 -0.02 2.05 16 42 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -81.29 356.34 4.82 -76.46 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.37 Total: 19.44 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 4.01 Total: 0.43 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.16 Total: -77.92 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -0.43 Total: -66.89 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -81.29 4.82 -76.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600107523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.879 kcal (2) G-P(sol) polarization free energy of solvation -81.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds