Wall clock time and date at job start Tue Mar 31 2020 11:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38081 * 119.85029 * 2 1 4 4 C 1.39719 * 120.14095 * 180.02562 * 3 2 1 5 5 C 1.47741 * 120.07830 * 179.97438 * 4 3 2 6 6 O 1.21471 * 119.99887 * 179.97438 * 5 4 3 7 7 O 1.34707 * 120.00234 * 0.02562 * 5 4 3 8 8 C 1.39387 * 119.83886 * 359.72860 * 4 3 2 9 9 C 1.39277 * 119.70319 * 0.53955 * 8 4 3 10 10 C 1.47864 * 120.06965 * 179.73098 * 9 8 4 11 11 O 1.21544 * 120.00177 * 50.73210 * 10 9 8 12 12 N 1.34783 * 119.99736 * 230.72862 * 10 9 8 13 13 C 1.46921 * 120.63320 * 355.92473 * 12 10 9 14 14 C 1.53625 * 108.54311 * 126.36920 * 13 12 10 15 15 C 1.53035 * 109.24325 * 54.85206 * 14 13 12 16 16 C 1.53034 * 109.54114 * 298.51225 * 15 14 13 17 17 H 1.08990 * 109.49930 * 301.41412 * 16 15 14 18 18 C 1.50699 * 109.52248 * 181.33020 * 16 15 14 19 19 H 1.07994 * 120.00538 * 0.14764 * 18 16 15 20 20 C 1.37886 * 119.99892 * 180.14846 * 18 16 15 21 21 N 1.31509 * 119.99919 * 179.97438 * 20 18 16 22 22 Si 1.86804 * 119.99856 * 359.97438 * 20 18 16 23 23 H 1.48499 * 109.46962 * 90.00217 * 22 20 18 24 24 H 1.48494 * 109.46966 * 210.00396 * 22 20 18 25 25 H 1.48503 * 109.46976 * 330.00230 * 22 20 18 26 26 C 1.46928 * 120.62644 * 176.20007 * 12 10 9 27 27 C 1.38068 * 119.84928 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46837 * 269.97600 * 1 2 3 29 29 H 1.08994 * 109.47130 * 29.97252 * 1 2 3 30 30 H 1.08997 * 109.47134 * 149.98250 * 1 2 3 31 31 H 1.08006 * 119.92664 * 0.02562 * 3 2 1 32 32 H 0.96696 * 117.00284 * 179.97438 * 7 5 4 33 33 H 1.07997 * 120.14470 * 180.25022 * 8 4 3 34 34 H 1.09002 * 109.58688 * 246.20314 * 13 12 10 35 35 H 1.08998 * 109.58681 * 6.62573 * 13 12 10 36 36 H 1.09001 * 109.63262 * 294.86335 * 14 13 12 37 37 H 1.08999 * 109.45594 * 174.74156 * 14 13 12 38 38 H 1.09005 * 109.45905 * 178.48715 * 15 14 13 39 39 H 1.09002 * 109.44659 * 58.52698 * 15 14 13 40 40 H 0.97005 * 119.99521 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.58815 * 353.37861 * 26 12 10 42 42 H 1.09002 * 109.58362 * 113.65799 * 26 12 10 43 43 H 1.08000 * 119.92080 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1976 0.0000 4 6 3.5914 1.2047 -0.0005 5 6 4.3254 2.4869 -0.0011 6 8 5.5401 2.4914 -0.0011 7 8 3.6476 3.6510 -0.0006 8 6 4.2911 -0.0008 0.0046 9 6 3.5913 -1.2050 -0.0011 10 6 4.3253 -2.4885 -0.0016 11 8 5.2023 -2.6875 0.8160 12 7 4.0218 -3.4380 -0.9089 13 6 2.9059 -3.2489 -1.8457 14 6 3.4275 -3.4578 -3.2755 15 6 4.1026 -4.8279 -3.3709 16 6 5.2938 -4.8795 -2.4117 17 1 5.9984 -4.0871 -2.6636 18 6 5.9779 -6.2171 -2.5298 19 1 5.6026 -6.9564 -3.2218 20 6 7.0830 -6.4971 -1.7542 21 7 7.6797 -7.6646 -1.8569 22 14 7.7327 -5.2181 -0.5577 23 1 7.0721 -5.3930 0.7607 24 1 9.2000 -5.3859 -0.4023 25 1 7.4425 -3.8588 -1.0804 26 6 4.7969 -4.6844 -0.9758 27 6 2.1942 -1.1975 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6506 2.1309 0.0004 32 1 4.1712 4.4639 -0.0006 33 1 5.3711 -0.0011 0.0083 34 1 2.1212 -3.9742 -1.6304 35 1 2.5103 -2.2384 -1.7435 36 1 4.1498 -2.6786 -3.5193 37 1 2.5939 -3.4132 -3.9762 38 1 4.4504 -4.9910 -4.3910 39 1 3.3865 -5.6047 -3.1028 40 1 8.4574 -7.8614 -1.3116 41 1 5.6494 -4.6214 -0.2994 42 1 4.1640 -5.5241 -0.6886 43 1 1.6504 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600110042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:00 Heat of formation + Delta-G solvation = -100.036755 kcal Electronic energy + Delta-G solvation = -26795.176381 eV Core-core repulsion = 22998.085647 eV Total energy + Delta-G solvation = -3797.090734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92652 -40.09111 -38.62905 -37.00229 -36.40275 -33.64107 -33.20108 -32.19797 -31.63921 -30.39911 -27.35051 -25.60810 -25.40722 -24.92699 -22.94613 -22.08448 -20.92134 -19.92535 -18.89851 -18.20662 -17.58117 -16.81924 -16.75074 -16.32082 -15.93857 -15.61726 -15.56028 -14.67625 -14.10832 -14.09844 -13.98379 -13.91679 -13.62649 -13.56270 -13.03434 -12.92588 -12.62580 -12.49795 -12.36981 -12.23370 -12.09822 -11.84303 -11.71150 -11.33019 -11.10539 -10.92019 -10.65260 -10.45525 -10.14343 -9.83376 -9.73717 -9.37767 -9.16060 -9.12372 -9.08630 -8.62030 -8.15620 -6.12302 -4.14085 0.29327 0.80907 2.13874 2.58014 2.89329 3.22992 3.37493 3.45721 3.50562 3.56118 4.31027 4.34616 4.40987 4.55382 4.78732 4.79999 4.95952 5.09652 5.12011 5.20006 5.25848 5.27821 5.35959 5.41575 5.47626 5.65165 5.73669 5.88409 5.94643 5.98066 6.02883 6.05213 6.12830 6.15056 6.35465 6.38719 6.47773 6.60037 6.70081 6.78702 7.10746 7.39988 7.56677 7.68782 7.72768 8.36200 8.47957 8.90818 9.49305 10.99641 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.004026 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.354880 B = 6953.319633 C = 7883.725393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.105 4.105 3 C -0.048 4.048 4 C -0.129 4.129 5 C 0.528 3.472 6 O -0.507 6.507 7 O -0.513 6.513 8 C -0.013 4.013 9 C -0.120 4.120 10 C 0.549 3.451 11 O -0.534 6.534 12 N -0.598 5.598 13 C 0.099 3.901 14 C -0.136 4.136 15 C -0.100 4.100 16 C 0.005 3.995 17 H 0.031 0.969 18 C -0.517 4.517 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.895 5.895 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.294 1.294 25 H -0.264 1.264 26 C 0.102 3.898 27 C -0.055 4.055 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.415 0.585 33 H 0.145 0.855 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 19.884 1.874 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 C -0.066 4.066 4 C -0.130 4.130 5 C 0.372 3.628 6 O -0.395 6.395 7 O -0.325 6.325 8 C -0.032 4.032 9 C -0.123 4.123 10 C 0.335 3.665 11 O -0.411 6.411 12 N -0.329 5.329 13 C -0.024 4.024 14 C -0.175 4.175 15 C -0.138 4.138 16 C -0.015 4.015 17 H 0.049 0.951 18 C -0.555 4.555 19 H 0.096 0.904 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.706 3.294 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.189 1.189 26 C -0.018 4.018 27 C -0.073 4.073 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.274 0.726 33 H 0.163 0.837 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.873 19.262 2.364 25.716 hybrid contribution 0.890 1.106 0.718 1.590 sum -15.983 20.368 3.081 26.073 Atomic orbital electron populations 1.20803 0.89864 1.03409 1.02879 1.19832 0.96862 0.92228 1.01549 1.21451 0.92404 0.98658 0.94114 1.18863 0.93616 0.90041 1.10460 1.20792 0.85489 0.84229 0.72253 1.90936 1.14962 1.87983 1.45665 1.84527 1.45051 1.16937 1.85989 1.21250 1.01247 0.89214 0.91534 1.19947 0.93954 0.93948 1.04448 1.18250 0.83211 0.83294 0.81705 1.90812 1.32202 1.79836 1.38277 1.48390 1.32710 1.18892 1.32942 1.22109 0.88804 1.01613 0.89884 1.22065 1.00400 1.00030 0.94969 1.21444 0.97795 0.94153 1.00423 1.19491 0.93870 0.98529 0.89608 0.95101 1.20942 1.11804 0.98727 1.24033 0.90383 1.25034 0.96156 0.95052 0.96610 1.69885 1.21245 1.21641 1.40446 0.87027 0.77539 0.82697 0.82098 1.19818 1.22141 1.18905 1.22695 0.95137 0.82334 1.01625 1.21543 0.92633 0.98723 0.94426 0.90743 0.91041 0.90933 0.84052 0.72604 0.83712 0.91133 0.90016 0.91939 0.91542 0.92116 0.92428 0.92455 0.90272 0.91189 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.00 36.01 0.36 -0.25 16 2 C -0.10 -0.89 5.87 -104.74 -0.61 -1.51 16 3 C -0.05 -0.43 9.26 -39.09 -0.36 -0.79 16 4 C -0.13 -1.50 5.87 -105.03 -0.62 -2.11 16 5 C 0.53 6.04 8.27 34.61 0.29 6.33 16 6 O -0.51 -7.56 17.13 -19.24 -0.33 -7.89 16 7 O -0.51 -3.80 12.67 -40.51 -0.51 -4.31 16 8 C -0.01 -0.19 9.28 -38.77 -0.36 -0.55 16 9 C -0.12 -1.73 5.00 -105.02 -0.52 -2.26 16 10 C 0.55 10.39 7.23 -12.32 -0.09 10.30 16 11 O -0.53 -12.46 16.47 5.33 0.09 -12.37 16 12 N -0.60 -10.95 2.97 -173.61 -0.51 -11.46 16 13 C 0.10 1.33 5.41 -3.49 -0.02 1.31 16 14 C -0.14 -1.95 6.10 -26.39 -0.16 -2.11 16 15 C -0.10 -1.84 5.11 -26.70 -0.14 -1.97 16 16 C 0.00 0.11 1.84 -91.66 -0.17 -0.06 16 17 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 18 C -0.52 -14.25 9.15 -34.44 -0.31 -14.56 16 19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 2.16 5.45 -17.82 -0.10 2.07 16 21 N -0.89 -27.41 13.96 55.43 0.77 -26.63 16 22 Si 0.88 23.40 24.32 -169.99 -4.13 19.27 16 23 H -0.27 -7.32 6.92 56.52 0.39 -6.93 16 24 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 25 H -0.26 -7.06 6.53 56.52 0.37 -6.70 16 26 C 0.10 2.27 5.10 -3.71 -0.02 2.25 16 27 C -0.05 -0.58 7.00 -39.10 -0.27 -0.86 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.14 0.93 7.60 -52.48 -0.40 0.53 16 32 H 0.42 1.26 9.11 45.56 0.42 1.68 16 33 H 0.15 2.32 7.65 -52.49 -0.40 1.92 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.91 4.55 -51.93 -0.24 0.67 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.08 2.00 2.34 -51.93 -0.12 1.88 16 42 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.14 1.26 7.07 -52.49 -0.37 0.88 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -36.06 348.95 -7.36 -43.42 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.88 Total: -0.50 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.11 Total: -4.77 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.26 Total: -38.09 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.76 Total: -24.58 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.13 Total: 19.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.06 -7.36 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600110042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.617 kcal (2) G-P(sol) polarization free energy of solvation -36.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds