Wall clock time and date at job start Tue Mar 31 2020 11:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38081 * 119.85029 * 2 1 4 4 C 1.39719 * 120.14095 * 180.02562 * 3 2 1 5 5 C 1.47741 * 120.07830 * 179.97438 * 4 3 2 6 6 O 1.21471 * 119.99887 * 179.97438 * 5 4 3 7 7 O 1.34707 * 120.00234 * 0.02562 * 5 4 3 8 8 C 1.39387 * 119.83886 * 359.72860 * 4 3 2 9 9 C 1.39277 * 119.70319 * 0.53955 * 8 4 3 10 10 C 1.47864 * 120.06965 * 179.73098 * 9 8 4 11 11 O 1.21544 * 120.00177 * 50.73210 * 10 9 8 12 12 N 1.34783 * 119.99736 * 230.72862 * 10 9 8 13 13 C 1.46921 * 120.63320 * 355.92473 * 12 10 9 14 14 C 1.53625 * 108.54311 * 126.36920 * 13 12 10 15 15 C 1.53035 * 109.24325 * 54.85206 * 14 13 12 16 16 C 1.53034 * 109.54114 * 298.51225 * 15 14 13 17 17 H 1.08990 * 109.49930 * 301.41412 * 16 15 14 18 18 C 1.50699 * 109.52248 * 181.33020 * 16 15 14 19 19 H 1.07994 * 120.00538 * 0.14764 * 18 16 15 20 20 C 1.37886 * 119.99892 * 180.14846 * 18 16 15 21 21 N 1.31509 * 119.99919 * 179.97438 * 20 18 16 22 22 Si 1.86804 * 119.99856 * 359.97438 * 20 18 16 23 23 H 1.48499 * 109.46962 * 90.00217 * 22 20 18 24 24 H 1.48494 * 109.46966 * 210.00396 * 22 20 18 25 25 H 1.48503 * 109.46976 * 330.00230 * 22 20 18 26 26 C 1.46928 * 120.62644 * 176.20007 * 12 10 9 27 27 C 1.38068 * 119.84928 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46837 * 269.97600 * 1 2 3 29 29 H 1.08994 * 109.47130 * 29.97252 * 1 2 3 30 30 H 1.08997 * 109.47134 * 149.98250 * 1 2 3 31 31 H 1.08006 * 119.92664 * 0.02562 * 3 2 1 32 32 H 0.96696 * 117.00284 * 179.97438 * 7 5 4 33 33 H 1.07997 * 120.14470 * 180.25022 * 8 4 3 34 34 H 1.09002 * 109.58688 * 246.20314 * 13 12 10 35 35 H 1.08998 * 109.58681 * 6.62573 * 13 12 10 36 36 H 1.09001 * 109.63262 * 294.86335 * 14 13 12 37 37 H 1.08999 * 109.45594 * 174.74156 * 14 13 12 38 38 H 1.09005 * 109.45905 * 178.48715 * 15 14 13 39 39 H 1.09002 * 109.44659 * 58.52698 * 15 14 13 40 40 H 0.97005 * 119.99521 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.58815 * 353.37861 * 26 12 10 42 42 H 1.09002 * 109.58362 * 113.65799 * 26 12 10 43 43 H 1.08000 * 119.92080 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1976 0.0000 4 6 3.5914 1.2047 -0.0005 5 6 4.3254 2.4869 -0.0011 6 8 5.5401 2.4914 -0.0011 7 8 3.6476 3.6510 -0.0006 8 6 4.2911 -0.0008 0.0046 9 6 3.5913 -1.2050 -0.0011 10 6 4.3253 -2.4885 -0.0016 11 8 5.2023 -2.6875 0.8160 12 7 4.0218 -3.4380 -0.9089 13 6 2.9059 -3.2489 -1.8457 14 6 3.4275 -3.4578 -3.2755 15 6 4.1026 -4.8279 -3.3709 16 6 5.2938 -4.8795 -2.4117 17 1 5.9984 -4.0871 -2.6636 18 6 5.9779 -6.2171 -2.5298 19 1 5.6026 -6.9564 -3.2218 20 6 7.0830 -6.4971 -1.7542 21 7 7.6797 -7.6646 -1.8569 22 14 7.7327 -5.2181 -0.5577 23 1 7.0721 -5.3930 0.7607 24 1 9.2000 -5.3859 -0.4023 25 1 7.4425 -3.8588 -1.0804 26 6 4.7969 -4.6844 -0.9758 27 6 2.1942 -1.1975 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6506 2.1309 0.0004 32 1 4.1712 4.4639 -0.0006 33 1 5.3711 -0.0011 0.0083 34 1 2.1212 -3.9742 -1.6304 35 1 2.5103 -2.2384 -1.7435 36 1 4.1498 -2.6786 -3.5193 37 1 2.5939 -3.4132 -3.9762 38 1 4.4504 -4.9910 -4.3910 39 1 3.3865 -5.6047 -3.1028 40 1 8.4574 -7.8614 -1.3116 41 1 5.6494 -4.6214 -0.2994 42 1 4.1640 -5.5241 -0.6886 43 1 1.6504 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600110042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:00 Heat of formation + Delta-G solvation = -125.945689 kcal Electronic energy + Delta-G solvation = -26796.299876 eV Core-core repulsion = 22998.085647 eV Total energy + Delta-G solvation = -3798.214230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.96275 -41.21173 -39.66068 -38.53302 -37.19536 -35.45294 -33.99866 -33.84613 -32.82144 -31.98354 -27.95593 -27.22408 -26.89882 -25.90158 -24.14483 -23.60822 -21.76028 -21.36260 -20.19780 -19.17740 -18.94247 -18.63765 -17.94025 -17.23031 -16.93108 -16.82013 -16.67318 -16.49303 -15.59622 -15.49473 -15.20939 -14.94662 -14.77043 -14.53017 -14.42386 -14.35432 -13.99916 -13.77754 -13.28213 -13.23138 -13.04487 -12.89626 -12.72870 -12.65671 -12.61671 -12.38416 -12.17416 -11.85421 -11.81858 -11.64508 -11.37731 -11.09694 -10.95923 -10.83636 -10.17919 -9.91383 -9.67294 -8.43584 -6.44308 -0.55840 -0.12222 1.16874 1.23472 1.24186 1.35541 1.48739 1.84486 2.01719 2.15981 2.53814 2.93782 3.24603 3.60744 3.78817 3.87838 3.94116 4.02146 4.06135 4.10808 4.23004 4.39560 4.46068 4.50860 4.56039 4.58853 4.68337 4.78508 4.84489 4.93322 4.96770 5.03199 5.06969 5.10892 5.20089 5.28623 5.33766 5.37603 5.47568 5.50432 5.59403 5.65006 5.67606 6.22502 6.32345 6.64831 6.86868 6.95361 7.21380 8.72558 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.004026 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.354880 B = 6953.319633 C = 7883.725393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.027 4.027 4 C -0.136 4.136 5 C 0.535 3.465 6 O -0.554 6.554 7 O -0.493 6.493 8 C -0.038 4.038 9 C -0.136 4.136 10 C 0.542 3.458 11 O -0.594 6.594 12 N -0.598 5.598 13 C 0.093 3.907 14 C -0.129 4.129 15 C -0.097 4.097 16 C 0.003 3.997 17 H 0.009 0.991 18 C -0.509 4.509 19 H 0.056 0.944 20 C 0.034 3.966 21 N -0.934 5.934 22 Si 0.929 3.071 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.108 3.892 27 C -0.048 4.048 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.176 0.824 32 H 0.436 0.564 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.268 0.732 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.600 22.709 1.322 32.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.045 4.045 4 C -0.137 4.137 5 C 0.381 3.619 6 O -0.446 6.446 7 O -0.307 6.307 8 C -0.057 4.057 9 C -0.140 4.140 10 C 0.332 3.668 11 O -0.476 6.476 12 N -0.329 5.329 13 C -0.027 4.027 14 C -0.167 4.167 15 C -0.135 4.135 16 C -0.017 4.017 17 H 0.027 0.973 18 C -0.547 4.547 19 H 0.074 0.926 20 C -0.165 4.165 21 N -0.574 5.574 22 Si 0.760 3.240 23 H -0.208 1.208 24 H -0.220 1.220 25 H -0.200 1.200 26 C -0.014 4.014 27 C -0.066 4.066 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.194 0.806 32 H 0.298 0.702 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.069 0.931 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.930 22.134 1.779 31.209 hybrid contribution 2.321 0.323 0.849 2.492 sum -19.609 22.457 2.627 29.929 Atomic orbital electron populations 1.20939 0.86609 1.05226 1.04128 1.20238 0.98781 0.90879 0.98743 1.21859 0.90881 1.00465 0.91329 1.18896 0.94924 0.89025 1.10859 1.20801 0.84793 0.85201 0.71118 1.90928 1.17012 1.88675 1.48006 1.84464 1.44540 1.16780 1.84914 1.21023 0.99868 0.90818 0.94020 1.19549 0.95409 0.91143 1.07853 1.19012 0.82601 0.84570 0.80657 1.90764 1.35004 1.81082 1.40709 1.48408 1.33330 1.17380 1.33759 1.22543 0.87649 1.04511 0.88042 1.22036 1.01370 0.96587 0.96664 1.21382 0.96123 0.97418 0.98562 1.19437 0.95395 0.94988 0.91849 0.97323 1.21313 1.11246 1.00045 1.22115 0.92550 1.25529 0.96947 0.95939 0.98051 1.69963 1.22346 1.23052 1.42068 0.86204 0.76822 0.80617 0.80367 1.20778 1.21965 1.20041 1.22195 0.94826 0.84686 0.99741 1.21766 0.90572 1.00821 0.93489 0.89584 0.89015 0.89493 0.80634 0.70151 0.87372 0.88112 0.86853 0.93062 0.86886 0.92493 0.91494 0.92297 0.93746 0.90758 0.82144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.00 71.24 0.71 0.26 16 2 C -0.09 -1.01 5.87 -19.94 -0.12 -1.13 16 3 C -0.03 -0.36 9.26 22.59 0.21 -0.15 16 4 C -0.14 -2.93 5.87 -20.13 -0.12 -3.05 16 5 C 0.54 11.59 8.27 70.33 0.58 12.17 16 6 O -0.55 -16.97 17.13 19.93 0.34 -16.63 16 7 O -0.49 -5.72 12.67 -56.16 -0.71 -6.43 16 8 C -0.04 -1.11 9.28 22.80 0.21 -0.90 16 9 C -0.14 -3.84 5.00 -20.12 -0.10 -3.94 16 10 C 0.54 20.97 7.23 86.79 0.63 21.60 16 11 O -0.59 -29.42 16.47 -3.85 -0.06 -29.49 16 12 N -0.60 -21.59 2.97 -821.45 -2.44 -24.02 16 13 C 0.09 2.18 5.41 86.51 0.47 2.64 16 14 C -0.13 -3.25 6.10 30.82 0.19 -3.06 16 15 C -0.10 -3.41 5.11 30.62 0.16 -3.26 16 16 C 0.00 0.14 1.84 -11.46 -0.02 0.12 16 17 H 0.01 0.44 7.20 -2.39 -0.02 0.43 16 18 C -0.51 -28.89 9.15 25.60 0.23 -28.65 16 19 H 0.06 3.40 7.99 -2.91 -0.02 3.37 16 20 C 0.03 2.07 5.45 84.66 0.46 2.53 16 21 N -0.93 -59.19 13.96 21.45 0.30 -58.89 16 22 Si 0.93 51.45 24.32 68.60 1.67 53.12 16 23 H -0.28 -15.78 6.92 99.48 0.69 -15.09 16 24 H -0.29 -15.83 7.11 99.48 0.71 -15.12 16 25 H -0.27 -15.45 6.53 99.48 0.65 -14.80 16 26 C 0.11 4.87 5.10 86.36 0.44 5.31 16 27 C -0.05 -0.84 7.00 22.58 0.16 -0.68 16 28 H 0.09 0.26 8.14 -2.39 -0.02 0.25 16 29 H 0.09 0.09 8.08 -2.39 -0.02 0.07 16 30 H 0.09 0.19 8.08 -2.39 -0.02 0.17 16 31 H 0.18 1.18 7.60 -2.91 -0.02 1.15 16 32 H 0.44 1.33 9.11 -74.06 -0.67 0.66 16 33 H 0.11 3.87 7.65 -2.91 -0.02 3.84 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 1.98 4.55 -2.39 -0.01 1.97 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 41 H 0.04 2.34 2.34 -2.39 -0.01 2.34 16 42 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.16 2.09 7.07 -2.91 -0.02 2.07 16 Total: -1.00 -86.90 348.95 3.49 -83.40 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: 0.30 Total: -0.87 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 4.09 Total: -0.20 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.14 Total: -82.91 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -0.43 Total: -52.55 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 1.67 Total: 53.12 kcal Total: -86.90 3.49 -83.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600110042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.542 kcal (2) G-P(sol) polarization free energy of solvation -86.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds