Wall clock time and date at job start Tue Mar 31 2020 11:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37765 * 119.85809 * 2 1 4 4 C 1.39382 * 119.59853 * 179.97438 * 3 2 1 5 5 C 1.46785 * 134.34683 * 179.97438 * 4 3 2 6 6 C 1.33985 * 106.18496 * 180.02562 * 5 4 3 7 7 C 1.50708 * 124.91914 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46961 * 90.01429 * 7 6 5 9 9 C 1.36929 * 119.99942 * 88.49011 * 8 7 6 10 10 H 1.08007 * 119.99999 * 217.32106 * 9 8 7 11 11 C 1.38816 * 120.00201 * 37.32409 * 9 8 7 12 12 N 1.31613 * 119.99918 * 23.26291 * 11 9 8 13 13 Si 1.86804 * 120.00079 * 203.26778 * 11 9 8 14 14 H 1.48493 * 109.47326 * 59.99283 * 13 11 9 15 15 H 1.48501 * 109.46888 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46790 * 299.99613 * 13 11 9 17 17 C 1.46499 * 119.99856 * 268.48987 * 8 7 6 18 18 C 1.53003 * 109.47298 * 90.00298 * 17 8 7 19 19 C 1.50702 * 109.47169 * 179.97438 * 18 17 8 20 20 O 1.20830 * 119.99951 * 0.02562 * 19 18 17 21 21 O 1.34227 * 119.99976 * 179.97438 * 19 18 17 22 22 O 1.34448 * 110.16529 * 359.97438 * 6 5 4 23 23 C 1.34840 * 110.89306 * 0.02562 * 22 6 5 24 24 C 1.38879 * 133.42205 * 180.02562 * 23 22 6 25 25 C 1.37861 * 119.95604 * 179.72180 * 24 23 22 26 26 C 1.50699 * 119.65506 * 180.27323 * 25 24 23 27 27 H 1.09007 * 109.47379 * 90.00678 * 1 2 3 28 28 H 1.09006 * 109.47120 * 210.00324 * 1 2 3 29 29 H 1.09002 * 109.47951 * 330.00545 * 1 2 3 30 30 H 1.07994 * 120.20318 * 0.02562 * 3 2 1 31 31 H 1.08006 * 126.90459 * 359.97357 * 5 4 3 32 32 H 1.08999 * 109.46897 * 210.01305 * 7 6 5 33 33 H 1.09001 * 109.46824 * 330.01804 * 7 6 5 34 34 H 0.96998 * 120.00482 * 180.02562 * 12 11 9 35 35 H 1.09004 * 109.46857 * 210.00160 * 17 8 7 36 36 H 1.09002 * 109.47077 * 329.99909 * 17 8 7 37 37 H 1.09000 * 109.46641 * 299.99971 * 18 17 8 38 38 H 1.08997 * 109.46827 * 59.99372 * 18 17 8 39 39 H 0.96701 * 116.99596 * 179.97438 * 21 19 18 40 40 H 1.08001 * 120.01726 * 0.02562 * 24 23 22 41 41 H 1.09004 * 109.47269 * 270.28423 * 26 25 24 42 42 H 1.09002 * 109.47088 * 30.28028 * 26 25 24 43 43 H 1.08996 * 109.47759 * 150.28327 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1948 0.0000 4 6 3.5866 1.1885 0.0005 5 6 4.6174 2.2335 0.0002 6 6 5.7958 1.5958 0.0005 7 6 7.1426 2.2720 -0.0002 8 7 7.5794 2.4918 1.3809 9 6 8.2890 1.5219 2.0371 10 1 8.1181 1.3461 3.0889 11 6 9.2282 0.7646 1.3505 12 7 9.7739 1.2341 0.2486 13 14 9.7176 -0.9208 1.9904 14 1 8.5199 -1.7969 2.0438 15 1 10.7289 -1.5202 1.0831 16 1 10.2927 -0.7851 3.3528 17 6 7.2568 3.7493 2.0597 18 6 5.9126 3.6113 2.7774 19 6 5.5812 4.9047 3.4762 20 8 6.3418 5.8410 3.4070 21 8 4.4405 5.0169 4.1747 22 8 5.6027 0.2652 0.0016 23 6 4.2870 -0.0298 0.0014 24 6 3.5762 -1.2228 0.0026 25 6 2.1977 -1.2029 0.0079 26 6 1.4332 -2.5016 0.0154 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3635 0.8900 0.5137 30 1 1.6539 2.1306 0.0004 31 1 4.4580 3.3017 -0.0009 32 1 7.8665 1.6394 -0.5138 33 1 7.0678 3.2301 -0.5144 34 1 10.4299 0.7049 -0.2314 35 1 8.0352 3.9794 2.7873 36 1 7.1962 4.5531 1.3260 37 1 5.1343 3.3812 2.0498 38 1 5.9733 2.8075 3.5110 39 1 4.2716 5.8658 4.6060 40 1 4.1030 -2.1656 0.0044 41 1 1.2493 -2.8209 -1.0105 42 1 2.0157 -3.2631 0.5340 43 1 0.4818 -2.3602 0.5279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600307829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:06 Heat of formation + Delta-G solvation = -56.029461 kcal Electronic energy + Delta-G solvation = -26612.336666 eV Core-core repulsion = 22817.154231 eV Total energy + Delta-G solvation = -3795.182434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.83195 -39.90406 -38.33434 -36.35014 -35.71362 -32.95875 -32.20818 -32.02143 -31.13633 -29.75634 -27.34313 -26.78679 -25.05849 -24.47004 -22.18703 -21.56760 -20.90987 -20.21241 -19.72182 -17.82841 -17.09177 -16.75648 -16.28222 -15.72822 -15.60034 -15.41413 -14.97992 -14.73761 -14.11342 -13.89803 -13.83063 -13.59815 -13.50333 -13.02047 -12.84064 -12.74355 -12.36892 -12.28597 -12.12294 -11.98966 -11.54254 -11.36981 -11.27555 -11.24656 -11.11639 -10.91727 -10.77076 -10.62479 -10.33334 -10.29721 -10.17523 -10.09570 -9.43107 -8.67736 -8.01741 -7.53172 -6.91535 -6.02402 -3.59229 1.29477 1.66326 2.53005 2.93494 3.31253 3.35419 3.37402 3.40052 3.43648 3.95909 4.37865 4.81567 4.89893 5.03217 5.14299 5.20377 5.26999 5.33584 5.47252 5.51269 5.55166 5.63154 5.66031 5.68565 5.73536 5.80776 5.88654 5.94547 6.07121 6.10032 6.19193 6.25352 6.35772 6.52609 6.56034 6.69586 6.71463 6.77598 6.87232 6.97567 7.03228 7.27958 7.66456 7.87385 8.17021 8.28910 8.91350 9.54658 10.08582 11.00337 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.005296 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.135775 B = 5285.308530 C = 7549.777114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C -0.080 4.080 4 C -0.116 4.116 5 C -0.258 4.258 6 C 0.078 3.922 7 C 0.196 3.804 8 N -0.563 5.563 9 C -0.277 4.277 10 H 0.065 0.935 11 C 0.026 3.974 12 N -0.877 5.877 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.279 1.279 17 C 0.159 3.841 18 C -0.143 4.143 19 C 0.480 3.520 20 O -0.522 6.522 21 O -0.524 6.524 22 O -0.181 6.181 23 C 0.042 3.958 24 C -0.104 4.104 25 C -0.079 4.079 26 C -0.110 4.110 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.400 0.600 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.942 -0.730 -0.320 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.098 4.098 4 C -0.117 4.117 5 C -0.278 4.278 6 C 0.026 3.974 7 C 0.068 3.932 8 N -0.280 5.280 9 C -0.406 4.406 10 H 0.083 0.917 11 C -0.176 4.176 12 N -0.517 5.517 13 Si 0.727 3.273 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.204 1.204 17 C 0.032 3.968 18 C -0.183 4.183 19 C 0.323 3.677 20 O -0.410 6.410 21 O -0.335 6.335 22 O -0.080 6.080 23 C -0.006 4.006 24 C -0.122 4.122 25 C -0.079 4.079 26 C -0.167 4.167 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.164 0.836 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.258 0.742 40 H 0.143 0.857 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.223 -1.118 -0.641 15.278 hybrid contribution -0.073 -0.202 0.688 0.720 sum -15.296 -1.320 0.046 15.353 Atomic orbital electron populations 1.20761 0.91369 1.02470 1.01900 1.19449 0.95641 0.92196 1.03773 1.20250 0.91527 0.97377 1.00660 1.19957 0.94076 0.93203 1.04458 1.22035 0.90401 0.98673 1.16707 1.24899 0.99886 0.79100 0.93564 1.19970 0.86912 0.97522 0.88792 1.43745 1.59054 1.14089 1.11100 1.18960 1.14751 1.11916 0.94979 0.91727 1.25159 0.94980 0.99805 0.97704 1.69984 1.26558 1.36129 1.19036 0.86433 0.78026 0.84364 0.78442 1.20447 1.21343 1.20437 1.20763 0.91741 0.88357 0.95900 1.22449 1.03577 0.91444 1.00806 1.24086 0.77351 0.90969 0.75256 1.90682 1.49458 1.41302 1.59589 1.84632 1.42311 1.43068 1.63511 1.84181 1.23150 1.25818 1.74873 1.19708 0.82509 0.95302 1.03052 1.19670 0.92373 0.94864 1.05309 1.19284 0.92005 0.94979 1.01659 1.20793 0.99787 0.93944 1.02145 0.91631 0.91406 0.91935 0.86208 0.83592 0.86939 0.90983 0.92951 0.91559 0.93280 0.87922 0.88096 0.74245 0.85688 0.91352 0.91693 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.60 36.00 0.35 -0.70 16 2 C -0.11 -1.48 5.88 -104.62 -0.61 -2.10 16 3 C -0.08 -1.20 9.74 -39.33 -0.38 -1.59 16 4 C -0.12 -2.09 6.40 -105.16 -0.67 -2.76 16 5 C -0.26 -4.69 9.11 -37.62 -0.34 -5.03 16 6 C 0.08 1.61 6.74 -35.80 -0.24 1.36 16 7 C 0.20 4.28 5.85 -5.19 -0.03 4.25 16 8 N -0.56 -13.03 2.41 -174.60 -0.42 -13.45 16 9 C -0.28 -7.18 9.44 -15.06 -0.14 -7.32 16 10 H 0.07 1.68 7.93 -52.48 -0.42 1.26 16 11 C 0.03 0.68 4.92 -17.43 -0.09 0.59 16 12 N -0.88 -23.85 11.55 55.49 0.64 -23.21 16 13 Si 0.90 21.07 29.61 -169.99 -5.03 16.04 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.16 3.21 5.00 -4.04 -0.02 3.19 16 18 C -0.14 -2.49 6.14 -27.88 -0.17 -2.66 16 19 C 0.48 7.76 8.33 36.01 0.30 8.06 16 20 O -0.52 -9.69 16.74 -18.75 -0.31 -10.01 16 21 O -0.52 -6.82 13.42 -39.25 -0.53 -7.35 16 22 O -0.18 -3.99 10.58 3.82 0.04 -3.95 16 23 C 0.04 0.82 7.41 -38.49 -0.29 0.53 16 24 C -0.10 -1.70 9.69 -39.48 -0.38 -2.08 16 25 C -0.08 -1.09 5.88 -104.58 -0.61 -1.70 16 26 C -0.11 -1.10 9.58 36.01 0.34 -0.75 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.56 5.90 -51.93 -0.31 0.26 16 29 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.15 2.33 7.76 -52.48 -0.41 1.92 16 32 H 0.11 2.81 5.56 -51.93 -0.29 2.52 16 33 H 0.07 1.41 7.87 -51.93 -0.41 1.00 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.07 1.42 8.00 -51.93 -0.42 1.01 16 36 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 37 H 0.10 1.76 5.65 -51.93 -0.29 1.47 16 38 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.40 3.29 9.10 45.56 0.41 3.70 16 40 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.07 0.59 5.90 -51.93 -0.31 0.28 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -30.61 361.89 -8.08 -38.69 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.92 Total: 6.48 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.00 Total: -8.70 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.22 Total: -36.66 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.80 Total: -21.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.61 -8.08 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600307829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.338 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds