Wall clock time and date at job start Tue Mar 31 2020 11:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37765 * 119.85809 * 2 1 4 4 C 1.39382 * 119.59853 * 179.97438 * 3 2 1 5 5 C 1.46785 * 134.34683 * 179.97438 * 4 3 2 6 6 C 1.33985 * 106.18496 * 180.02562 * 5 4 3 7 7 C 1.50708 * 124.91914 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46961 * 90.01429 * 7 6 5 9 9 C 1.36929 * 119.99942 * 88.49011 * 8 7 6 10 10 H 1.08007 * 119.99999 * 217.32106 * 9 8 7 11 11 C 1.38816 * 120.00201 * 37.32409 * 9 8 7 12 12 N 1.31613 * 119.99918 * 23.26291 * 11 9 8 13 13 Si 1.86804 * 120.00079 * 203.26778 * 11 9 8 14 14 H 1.48493 * 109.47326 * 59.99283 * 13 11 9 15 15 H 1.48501 * 109.46888 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46790 * 299.99613 * 13 11 9 17 17 C 1.46499 * 119.99856 * 268.48987 * 8 7 6 18 18 C 1.53003 * 109.47298 * 90.00298 * 17 8 7 19 19 C 1.50702 * 109.47169 * 179.97438 * 18 17 8 20 20 O 1.20830 * 119.99951 * 0.02562 * 19 18 17 21 21 O 1.34227 * 119.99976 * 179.97438 * 19 18 17 22 22 O 1.34448 * 110.16529 * 359.97438 * 6 5 4 23 23 C 1.34840 * 110.89306 * 0.02562 * 22 6 5 24 24 C 1.38879 * 133.42205 * 180.02562 * 23 22 6 25 25 C 1.37861 * 119.95604 * 179.72180 * 24 23 22 26 26 C 1.50699 * 119.65506 * 180.27323 * 25 24 23 27 27 H 1.09007 * 109.47379 * 90.00678 * 1 2 3 28 28 H 1.09006 * 109.47120 * 210.00324 * 1 2 3 29 29 H 1.09002 * 109.47951 * 330.00545 * 1 2 3 30 30 H 1.07994 * 120.20318 * 0.02562 * 3 2 1 31 31 H 1.08006 * 126.90459 * 359.97357 * 5 4 3 32 32 H 1.08999 * 109.46897 * 210.01305 * 7 6 5 33 33 H 1.09001 * 109.46824 * 330.01804 * 7 6 5 34 34 H 0.96998 * 120.00482 * 180.02562 * 12 11 9 35 35 H 1.09004 * 109.46857 * 210.00160 * 17 8 7 36 36 H 1.09002 * 109.47077 * 329.99909 * 17 8 7 37 37 H 1.09000 * 109.46641 * 299.99971 * 18 17 8 38 38 H 1.08997 * 109.46827 * 59.99372 * 18 17 8 39 39 H 0.96701 * 116.99596 * 179.97438 * 21 19 18 40 40 H 1.08001 * 120.01726 * 0.02562 * 24 23 22 41 41 H 1.09004 * 109.47269 * 270.28423 * 26 25 24 42 42 H 1.09002 * 109.47088 * 30.28028 * 26 25 24 43 43 H 1.08996 * 109.47759 * 150.28327 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1948 0.0000 4 6 3.5866 1.1885 0.0005 5 6 4.6174 2.2335 0.0002 6 6 5.7958 1.5958 0.0005 7 6 7.1426 2.2720 -0.0002 8 7 7.5794 2.4918 1.3809 9 6 8.2890 1.5219 2.0371 10 1 8.1181 1.3461 3.0889 11 6 9.2282 0.7646 1.3505 12 7 9.7739 1.2341 0.2486 13 14 9.7176 -0.9208 1.9904 14 1 8.5199 -1.7969 2.0438 15 1 10.7289 -1.5202 1.0831 16 1 10.2927 -0.7851 3.3528 17 6 7.2568 3.7493 2.0597 18 6 5.9126 3.6113 2.7774 19 6 5.5812 4.9047 3.4762 20 8 6.3418 5.8410 3.4070 21 8 4.4405 5.0169 4.1747 22 8 5.6027 0.2652 0.0016 23 6 4.2870 -0.0298 0.0014 24 6 3.5762 -1.2228 0.0026 25 6 2.1977 -1.2029 0.0079 26 6 1.4332 -2.5016 0.0154 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3635 0.8900 0.5137 30 1 1.6539 2.1306 0.0004 31 1 4.4580 3.3017 -0.0009 32 1 7.8665 1.6394 -0.5138 33 1 7.0678 3.2301 -0.5144 34 1 10.4299 0.7049 -0.2314 35 1 8.0352 3.9794 2.7873 36 1 7.1962 4.5531 1.3260 37 1 5.1343 3.3812 2.0498 38 1 5.9733 2.8075 3.5110 39 1 4.2716 5.8658 4.6060 40 1 4.1030 -2.1656 0.0044 41 1 1.2493 -2.8209 -1.0105 42 1 2.0157 -3.2631 0.5340 43 1 0.4818 -2.3602 0.5279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600307829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:06 Heat of formation + Delta-G solvation = -72.931623 kcal Electronic energy + Delta-G solvation = -26613.069598 eV Core-core repulsion = 22817.154231 eV Total energy + Delta-G solvation = -3795.915367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.24756 -41.19757 -39.50691 -37.96972 -37.02631 -34.30897 -33.96251 -33.18783 -32.47725 -31.29248 -28.73984 -27.82614 -26.79199 -25.78089 -23.55956 -22.94570 -22.27974 -21.64577 -21.12861 -19.13400 -18.83538 -18.10357 -17.66997 -17.10943 -16.96730 -16.86220 -16.56129 -16.09392 -15.56288 -15.31188 -15.19460 -14.92249 -14.78354 -14.28456 -14.22287 -13.78527 -13.63307 -13.53777 -13.23394 -13.15154 -13.05248 -12.88864 -12.79084 -12.57512 -12.51206 -12.25072 -12.23861 -12.12037 -12.06870 -11.85513 -11.68496 -11.59760 -10.77261 -10.63445 -9.23075 -8.88423 -8.78734 -7.99063 -5.59024 0.03874 0.44243 1.23014 1.39495 1.45458 1.50275 1.52323 1.99235 2.15752 2.47346 2.74654 3.15497 3.57494 3.69588 3.83416 3.94936 4.08379 4.13476 4.16363 4.26808 4.34065 4.46681 4.53337 4.63258 4.69750 4.74204 4.76133 4.81411 4.85895 4.94580 4.96217 5.00962 5.16968 5.23512 5.28574 5.34641 5.39841 5.43307 5.60420 5.63927 5.65711 5.70205 5.95911 6.31364 6.47559 6.99252 7.05412 7.65027 8.17136 9.00424 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.005296 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.135775 B = 5285.308530 C = 7549.777114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.231 4.231 6 C 0.043 3.957 7 C 0.203 3.797 8 N -0.577 5.577 9 C -0.281 4.281 10 H 0.058 0.942 11 C -0.018 4.018 12 N -0.904 5.904 13 Si 0.949 3.051 14 H -0.287 1.287 15 H -0.287 1.287 16 H -0.270 1.270 17 C 0.163 3.837 18 C -0.130 4.130 19 C 0.495 3.505 20 O -0.548 6.548 21 O -0.512 6.512 22 O -0.217 6.217 23 C 0.008 3.992 24 C -0.128 4.128 25 C -0.068 4.068 26 C -0.110 4.110 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.169 0.831 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.257 0.743 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.425 0.575 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.985 -0.875 0.205 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.107 4.107 3 C -0.100 4.100 4 C -0.139 4.139 5 C -0.251 4.251 6 C -0.007 4.007 7 C 0.076 3.924 8 N -0.296 5.296 9 C -0.411 4.411 10 H 0.075 0.925 11 C -0.217 4.217 12 N -0.546 5.546 13 Si 0.777 3.223 14 H -0.213 1.213 15 H -0.213 1.213 16 H -0.195 1.195 17 C 0.037 3.963 18 C -0.170 4.170 19 C 0.339 3.661 20 O -0.439 6.439 21 O -0.326 6.326 22 O -0.119 6.119 23 C -0.039 4.039 24 C -0.146 4.146 25 C -0.068 4.068 26 C -0.166 4.166 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.164 0.836 31 H 0.187 0.813 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.287 0.713 40 H 0.146 0.854 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.309 -1.242 -0.090 19.349 hybrid contribution 0.921 -0.181 0.526 1.076 sum -18.388 -1.423 0.436 18.448 Atomic orbital electron populations 1.20864 0.87968 1.04079 1.03394 1.20000 0.97999 0.91311 1.01388 1.20642 0.90297 0.99345 0.99703 1.20180 0.95388 0.92303 1.06075 1.22260 0.89620 0.99661 1.13597 1.24442 0.99865 0.79217 0.97218 1.19678 0.87052 0.97741 0.87895 1.43844 1.59729 1.14567 1.11457 1.19107 1.14547 1.12471 0.94950 0.92482 1.25727 0.95486 1.02244 0.98244 1.70078 1.27469 1.36927 1.20134 0.85641 0.77235 0.81176 0.78284 1.21328 1.21281 1.19514 1.20694 0.92656 0.87387 0.95604 1.22092 1.02023 0.92229 1.00703 1.23533 0.77742 0.89781 0.75058 1.90688 1.50542 1.41970 1.60702 1.84543 1.40290 1.44945 1.62825 1.84072 1.25182 1.26555 1.76116 1.20247 0.81678 0.97167 1.04785 1.20017 0.93714 0.94259 1.06658 1.19833 0.91082 0.97204 0.98683 1.20919 1.00264 0.91832 1.03622 0.90006 0.89577 0.90674 0.83640 0.81337 0.90426 0.89323 0.93377 0.93507 0.92556 0.87324 0.88856 0.71320 0.85370 0.89663 0.91255 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.60 71.24 0.68 -0.82 16 2 C -0.11 -2.49 5.88 -19.86 -0.12 -2.61 16 3 C -0.08 -2.24 9.74 22.43 0.22 -2.02 16 4 C -0.14 -4.88 6.40 -20.21 -0.13 -5.01 16 5 C -0.23 -8.35 9.11 23.54 0.21 -8.14 16 6 C 0.04 1.86 6.74 24.72 0.17 2.02 16 7 C 0.20 9.34 5.85 85.64 0.50 9.84 16 8 N -0.58 -27.79 2.41 -706.31 -1.70 -29.50 16 9 C -0.28 -15.16 9.44 84.04 0.79 -14.36 16 10 H 0.06 3.09 7.93 -2.91 -0.02 3.06 16 11 C -0.02 -0.97 4.92 84.86 0.42 -0.55 16 12 N -0.90 -51.51 11.55 21.65 0.25 -51.26 16 13 Si 0.95 44.91 29.61 68.60 2.03 46.94 16 14 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 15 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 17 C 0.16 6.70 5.00 86.38 0.43 7.13 16 18 C -0.13 -4.50 6.14 29.85 0.18 -4.32 16 19 C 0.50 15.24 8.33 71.24 0.59 15.84 16 20 O -0.55 -19.80 16.74 21.95 0.37 -19.43 16 21 O -0.51 -11.88 13.42 -51.39 -0.69 -12.57 16 22 O -0.22 -10.16 10.58 -9.24 -0.10 -10.26 16 23 C 0.01 0.33 7.41 22.98 0.17 0.50 16 24 C -0.13 -4.16 9.69 22.33 0.22 -3.95 16 25 C -0.07 -1.69 5.88 -19.84 -0.12 -1.81 16 26 C -0.11 -1.78 9.58 71.24 0.68 -1.09 16 27 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.09 0.93 5.90 -2.38 -0.01 0.92 16 29 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 31 H 0.17 5.10 7.76 -2.91 -0.02 5.08 16 32 H 0.08 4.14 5.56 -2.39 -0.01 4.13 16 33 H 0.09 3.61 7.87 -2.39 -0.02 3.59 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.05 2.07 8.00 -2.38 -0.02 2.05 16 36 H 0.06 2.21 7.84 -2.39 -0.02 2.19 16 37 H 0.11 3.63 5.65 -2.39 -0.01 3.62 16 38 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 39 H 0.43 5.56 9.10 -74.06 -0.67 4.88 16 40 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 43 H 0.09 1.10 5.90 -2.39 -0.01 1.08 16 Total: -1.00 -69.81 361.89 5.44 -64.36 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.38 Total: 21.08 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.91 Total: -9.37 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.45 Total: -80.76 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.42 Total: -42.26 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.81 5.44 -64.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600307829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.569 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds