Wall clock time and date at job start Tue Mar 31 2020 11:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38346 * 119.85534 * 2 1 4 4 C 1.37973 * 120.14256 * 179.97438 * 3 2 1 5 5 C 1.39532 * 119.85371 * 0.02562 * 4 3 2 6 6 C 1.47813 * 120.13754 * 179.97438 * 5 4 3 7 7 C 1.32566 * 120.00467 * 36.68095 * 6 5 4 8 8 C 1.50704 * 119.99563 * 7.67208 * 7 6 5 9 9 C 1.50704 * 109.47015 * 127.63254 * 8 7 6 10 10 O 1.21293 * 119.99621 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99798 * 179.97438 * 9 8 7 12 12 C 1.37091 * 119.99952 * 0.02562 * 11 9 8 13 13 H 1.08002 * 120.00321 * 323.00408 * 12 11 9 14 14 C 1.38950 * 120.00087 * 143.00750 * 12 11 9 15 15 N 1.31408 * 120.00259 * 158.71365 * 14 12 11 16 16 Si 1.86804 * 119.99572 * 338.71374 * 14 12 11 17 17 H 1.48497 * 109.47042 * 91.17003 * 16 14 12 18 18 H 1.48504 * 109.46983 * 211.16779 * 16 14 12 19 19 H 1.48500 * 109.47359 * 331.16321 * 16 14 12 20 20 C 1.46502 * 119.99724 * 179.97438 * 11 9 8 21 21 C 1.52997 * 109.46878 * 83.93552 * 20 11 9 22 22 C 1.50699 * 109.47175 * 179.97438 * 21 20 11 23 23 O 1.20830 * 119.99752 * 0.02562 * 22 21 20 24 24 O 1.34226 * 120.00429 * 180.02562 * 22 21 20 25 25 C 1.39531 * 119.71974 * 0.27967 * 5 4 3 26 26 C 1.37972 * 119.85376 * 359.41460 * 25 5 4 27 27 H 1.08997 * 109.47183 * 89.99738 * 1 2 3 28 28 H 1.09001 * 109.46658 * 210.00018 * 1 2 3 29 29 H 1.09002 * 109.46796 * 330.00179 * 1 2 3 30 30 H 1.08004 * 119.93299 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.07136 * 179.97438 * 4 3 2 32 32 H 1.08005 * 119.99788 * 216.67025 * 6 5 4 33 33 H 1.07997 * 120.00570 * 187.67472 * 7 6 5 34 34 H 1.09001 * 109.47164 * 247.63250 * 8 7 6 35 35 H 1.08996 * 109.47157 * 7.63361 * 8 7 6 36 36 H 0.97005 * 120.00138 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.46872 * 203.93434 * 20 11 9 38 38 H 1.09006 * 109.46886 * 323.93857 * 20 11 9 39 39 H 1.08996 * 109.47531 * 300.00095 * 21 20 11 40 40 H 1.09000 * 109.47459 * 60.00165 * 21 20 11 41 41 H 0.96699 * 117.00206 * 180.02562 * 24 22 21 42 42 H 1.08002 * 120.07247 * 179.72875 * 25 5 4 43 43 H 1.08001 * 119.93394 * 180.30155 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1998 0.0000 4 6 3.5755 1.2068 0.0005 5 6 4.2761 0.0001 0.0005 6 6 5.7542 0.0002 0.0005 7 6 6.4171 0.9209 0.6863 8 6 5.6736 1.8588 1.6022 9 6 6.3039 1.8291 2.9708 10 8 7.2622 1.1160 3.1817 11 7 5.8027 2.5948 3.9602 12 6 4.7193 3.4002 3.7218 13 1 4.6169 3.8999 2.7699 14 6 3.7528 3.5737 4.7050 15 7 2.9627 4.6231 4.6717 16 14 3.5769 2.3151 6.0741 17 1 4.4273 2.7131 7.2246 18 1 2.1579 2.2495 6.5068 19 1 4.0055 0.9822 5.5793 20 6 6.4151 2.5654 5.2908 21 6 7.6094 3.5211 5.3237 22 6 8.2390 3.4915 6.6925 23 8 7.7798 2.7787 7.5533 24 8 9.3098 4.2569 6.9555 25 6 3.5755 -1.2066 -0.0059 26 6 2.1958 -1.1997 0.0000 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6523 2.1332 -0.0004 31 1 4.1120 2.1441 0.0001 32 1 6.2943 -0.7500 -0.5581 33 1 7.4898 0.9989 0.5886 34 1 5.7216 2.8715 1.2020 35 1 4.6321 1.5459 1.6750 36 1 2.2877 4.7441 5.3578 37 1 5.6816 2.8749 6.0352 38 1 6.7535 1.5533 5.5128 39 1 8.3430 3.2118 4.5792 40 1 7.2711 4.5333 5.1016 41 1 9.6790 4.2037 7.8477 42 1 4.1121 -2.1439 -0.0104 43 1 1.6523 -2.1330 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600398745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:33 Heat of formation + Delta-G solvation = -80.716274 kcal Electronic energy + Delta-G solvation = -26321.505715 eV Core-core repulsion = 22525.252780 eV Total energy + Delta-G solvation = -3796.252935 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.03755 -39.44596 -38.71140 -36.02186 -35.45617 -34.78691 -32.35284 -31.73170 -30.87960 -30.62953 -28.14360 -25.98259 -25.06910 -24.20933 -22.38918 -21.37865 -20.81905 -19.30472 -18.73137 -17.93202 -17.10072 -16.37882 -16.29729 -15.59824 -15.56120 -15.30663 -14.98656 -14.71977 -14.58259 -13.91422 -13.74770 -13.55351 -13.25640 -13.11922 -12.92445 -12.61588 -12.57072 -12.20841 -12.07141 -11.89858 -11.84420 -11.42078 -11.36890 -11.29253 -11.01695 -10.87127 -10.72354 -10.41863 -10.31356 -10.17085 -9.91005 -9.39825 -9.24679 -8.72705 -8.55892 -7.96128 -7.74997 -6.56859 -4.18102 1.30335 1.67575 2.49859 2.69220 3.07261 3.21002 3.24995 3.31116 3.67991 4.06820 4.08750 4.43264 4.87065 5.00706 5.02575 5.16788 5.23877 5.34325 5.37875 5.50344 5.51535 5.64483 5.68023 5.71990 5.79851 5.91339 5.94875 6.04729 6.09775 6.13048 6.26173 6.30019 6.34602 6.41240 6.50328 6.62360 6.71943 6.74277 6.83387 6.95212 7.13812 7.22849 7.28524 7.96476 8.11777 8.15816 8.85924 9.24253 9.57352 10.52943 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.004129 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.378589 B = 6779.552442 C = 7954.654309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.115 4.115 4 C -0.103 4.103 5 C -0.053 4.053 6 C -0.149 4.149 7 C -0.094 4.094 8 C -0.111 4.111 9 C 0.485 3.515 10 O -0.596 6.596 11 N -0.464 5.464 12 C -0.351 4.351 13 H 0.108 0.892 14 C 0.073 3.927 15 N -0.854 5.854 16 Si 0.865 3.135 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.260 1.260 20 C 0.111 3.889 21 C -0.123 4.123 22 C 0.484 3.516 23 O -0.520 6.520 24 O -0.520 6.520 25 C -0.112 4.112 26 C -0.125 4.125 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.276 0.724 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.403 0.597 42 H 0.119 0.881 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -4.126 -6.945 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.121 4.121 5 C -0.053 4.053 6 C -0.167 4.167 7 C -0.113 4.113 8 C -0.150 4.150 9 C 0.275 3.725 10 O -0.480 6.480 11 N -0.184 5.184 12 C -0.477 4.477 13 H 0.126 0.874 14 C -0.136 4.136 15 N -0.489 5.489 16 Si 0.692 3.308 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.184 1.184 20 C -0.012 4.012 21 C -0.161 4.161 22 C 0.327 3.673 23 O -0.408 6.408 24 O -0.332 6.332 25 C -0.130 4.130 26 C -0.143 4.143 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.261 0.739 42 H 0.137 0.863 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.041 -4.521 -6.915 8.327 hybrid contribution 0.002 -0.481 1.558 1.631 sum 1.043 -5.002 -5.357 7.403 Atomic orbital electron populations 1.20776 0.91601 1.02734 1.01838 1.19928 0.95872 0.93293 1.00365 1.21001 0.94220 0.97544 1.00552 1.21507 0.94129 0.97831 0.98589 1.19072 0.93345 0.93061 0.99806 1.21507 0.91647 0.99985 1.03573 1.23089 0.99692 0.94817 0.93670 1.21022 1.01640 1.00122 0.92232 1.20407 0.85053 0.79804 0.87198 1.90550 1.30414 1.43088 1.83995 1.43730 1.28140 1.38467 1.08105 1.19066 0.98824 1.25218 1.04608 0.87427 1.25290 0.95198 0.95366 0.97711 1.69740 1.20294 1.24209 1.34639 0.87162 0.77312 0.83831 0.82473 1.19321 1.21309 1.18445 1.21472 0.93634 0.98829 0.87302 1.21761 0.99101 1.04809 0.90466 1.23732 0.76916 0.75417 0.91266 1.90703 1.61872 1.39557 1.48668 1.84579 1.44992 1.64081 1.39507 1.21176 0.93948 0.97348 1.00555 1.20874 0.94118 0.97249 1.02045 0.91558 0.91880 0.91453 0.85895 0.85070 0.86460 0.86482 0.88646 0.87059 0.91341 0.90065 0.90679 0.87401 0.86832 0.73881 0.86316 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.01 0.36 -0.87 16 2 C -0.09 -1.30 5.88 -104.54 -0.62 -1.92 16 3 C -0.12 -1.70 9.68 -39.64 -0.38 -2.08 16 4 C -0.10 -1.59 7.30 -39.20 -0.29 -1.88 16 5 C -0.05 -0.82 5.20 -105.02 -0.55 -1.36 16 6 C -0.15 -2.23 9.80 -37.57 -0.37 -2.60 16 7 C -0.09 -1.55 8.71 -36.21 -0.32 -1.86 16 8 C -0.11 -2.07 3.10 -29.03 -0.09 -2.16 16 9 C 0.49 10.81 7.58 -10.98 -0.08 10.73 16 10 O -0.60 -14.28 15.71 5.55 0.09 -14.20 16 11 N -0.46 -10.73 2.21 -114.81 -0.25 -10.98 16 12 C -0.35 -8.60 9.09 -14.94 -0.14 -8.73 16 13 H 0.11 2.68 7.21 -52.49 -0.38 2.30 16 14 C 0.07 1.86 5.29 -17.47 -0.09 1.77 16 15 N -0.85 -22.63 13.96 55.50 0.77 -21.85 16 16 Si 0.87 20.75 25.11 -169.99 -4.27 16.48 16 17 H -0.27 -6.39 6.49 56.52 0.37 -6.03 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.26 -6.46 7.11 56.52 0.40 -6.05 16 20 C 0.11 2.48 3.21 -4.04 -0.01 2.47 16 21 C -0.12 -2.28 6.09 -27.88 -0.17 -2.45 16 22 C 0.48 8.49 8.33 36.01 0.30 8.79 16 23 O -0.52 -10.66 16.74 -18.75 -0.31 -10.97 16 24 O -0.52 -7.04 13.42 -39.25 -0.53 -7.57 16 25 C -0.11 -1.60 9.79 -39.20 -0.38 -1.98 16 26 C -0.12 -1.68 9.68 -39.64 -0.38 -2.06 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.13 1.96 6.16 -52.48 -0.32 1.63 16 32 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.12 1.84 8.04 -52.49 -0.42 1.42 16 34 H 0.10 1.64 7.47 -51.93 -0.39 1.25 16 35 H 0.11 2.17 4.69 -51.93 -0.24 1.93 16 36 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.08 1.93 3.27 -51.93 -0.17 1.76 16 38 H 0.07 1.74 7.57 -51.93 -0.39 1.35 16 39 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 40 H 0.11 2.04 8.14 -51.93 -0.42 1.61 16 41 H 0.40 3.50 9.10 45.56 0.41 3.92 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -31.01 361.24 -7.14 -38.14 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -4.87 Total: 11.71 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -3.21 Total: -6.21 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.52 Total: -32.83 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.75 Total: -32.74 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.27 Total: 16.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.01 -7.14 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600398745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.572 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds