Wall clock time and date at job start Tue Mar 31 2020 11:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38346 * 119.85534 * 2 1 4 4 C 1.37973 * 120.14256 * 179.97438 * 3 2 1 5 5 C 1.39532 * 119.85371 * 0.02562 * 4 3 2 6 6 C 1.47813 * 120.13754 * 179.97438 * 5 4 3 7 7 C 1.32566 * 120.00467 * 36.68095 * 6 5 4 8 8 C 1.50704 * 119.99563 * 7.67208 * 7 6 5 9 9 C 1.50704 * 109.47015 * 127.63254 * 8 7 6 10 10 O 1.21293 * 119.99621 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99798 * 179.97438 * 9 8 7 12 12 C 1.37091 * 119.99952 * 0.02562 * 11 9 8 13 13 H 1.08002 * 120.00321 * 323.00408 * 12 11 9 14 14 C 1.38950 * 120.00087 * 143.00750 * 12 11 9 15 15 N 1.31408 * 120.00259 * 158.71365 * 14 12 11 16 16 Si 1.86804 * 119.99572 * 338.71374 * 14 12 11 17 17 H 1.48497 * 109.47042 * 91.17003 * 16 14 12 18 18 H 1.48504 * 109.46983 * 211.16779 * 16 14 12 19 19 H 1.48500 * 109.47359 * 331.16321 * 16 14 12 20 20 C 1.46502 * 119.99724 * 179.97438 * 11 9 8 21 21 C 1.52997 * 109.46878 * 83.93552 * 20 11 9 22 22 C 1.50699 * 109.47175 * 179.97438 * 21 20 11 23 23 O 1.20830 * 119.99752 * 0.02562 * 22 21 20 24 24 O 1.34226 * 120.00429 * 180.02562 * 22 21 20 25 25 C 1.39531 * 119.71974 * 0.27967 * 5 4 3 26 26 C 1.37972 * 119.85376 * 359.41460 * 25 5 4 27 27 H 1.08997 * 109.47183 * 89.99738 * 1 2 3 28 28 H 1.09001 * 109.46658 * 210.00018 * 1 2 3 29 29 H 1.09002 * 109.46796 * 330.00179 * 1 2 3 30 30 H 1.08004 * 119.93299 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.07136 * 179.97438 * 4 3 2 32 32 H 1.08005 * 119.99788 * 216.67025 * 6 5 4 33 33 H 1.07997 * 120.00570 * 187.67472 * 7 6 5 34 34 H 1.09001 * 109.47164 * 247.63250 * 8 7 6 35 35 H 1.08996 * 109.47157 * 7.63361 * 8 7 6 36 36 H 0.97005 * 120.00138 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.46872 * 203.93434 * 20 11 9 38 38 H 1.09006 * 109.46886 * 323.93857 * 20 11 9 39 39 H 1.08996 * 109.47531 * 300.00095 * 21 20 11 40 40 H 1.09000 * 109.47459 * 60.00165 * 21 20 11 41 41 H 0.96699 * 117.00206 * 180.02562 * 24 22 21 42 42 H 1.08002 * 120.07247 * 179.72875 * 25 5 4 43 43 H 1.08001 * 119.93394 * 180.30155 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1998 0.0000 4 6 3.5755 1.2068 0.0005 5 6 4.2761 0.0001 0.0005 6 6 5.7542 0.0002 0.0005 7 6 6.4171 0.9209 0.6863 8 6 5.6736 1.8588 1.6022 9 6 6.3039 1.8291 2.9708 10 8 7.2622 1.1160 3.1817 11 7 5.8027 2.5948 3.9602 12 6 4.7193 3.4002 3.7218 13 1 4.6169 3.8999 2.7699 14 6 3.7528 3.5737 4.7050 15 7 2.9627 4.6231 4.6717 16 14 3.5769 2.3151 6.0741 17 1 4.4273 2.7131 7.2246 18 1 2.1579 2.2495 6.5068 19 1 4.0055 0.9822 5.5793 20 6 6.4151 2.5654 5.2908 21 6 7.6094 3.5211 5.3237 22 6 8.2390 3.4915 6.6925 23 8 7.7798 2.7787 7.5533 24 8 9.3098 4.2569 6.9555 25 6 3.5755 -1.2066 -0.0059 26 6 2.1958 -1.1997 0.0000 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6523 2.1332 -0.0004 31 1 4.1120 2.1441 0.0001 32 1 6.2943 -0.7500 -0.5581 33 1 7.4898 0.9989 0.5886 34 1 5.7216 2.8715 1.2020 35 1 4.6321 1.5459 1.6750 36 1 2.2877 4.7441 5.3578 37 1 5.6816 2.8749 6.0352 38 1 6.7535 1.5533 5.5128 39 1 8.3430 3.2118 4.5792 40 1 7.2711 4.5333 5.1016 41 1 9.6790 4.2037 7.8477 42 1 4.1121 -2.1439 -0.0104 43 1 1.6523 -2.1330 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600398745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:31 Heat of formation + Delta-G solvation = -98.106361 kcal Electronic energy + Delta-G solvation = -26322.259806 eV Core-core repulsion = 22525.252780 eV Total energy + Delta-G solvation = -3797.007026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.49013 -40.82108 -40.13927 -37.41596 -36.98694 -36.21688 -34.22416 -33.05063 -32.37531 -31.72674 -29.48298 -27.13243 -26.95062 -25.76836 -23.52013 -22.55945 -22.18845 -21.00920 -20.08760 -19.33895 -18.70938 -18.08961 -17.88526 -17.04674 -16.96540 -16.61083 -16.36923 -16.10539 -15.87652 -15.59332 -15.20654 -14.77494 -14.56265 -14.53946 -14.35995 -14.22226 -13.81369 -13.73240 -13.57959 -13.17580 -13.01121 -12.91394 -12.79382 -12.64621 -12.59009 -12.46891 -12.11062 -11.83442 -11.79308 -11.72083 -11.58755 -11.18521 -10.65430 -10.37790 -9.86243 -9.71227 -8.91884 -8.55914 -6.15537 0.16258 0.56768 1.10335 1.14487 1.26908 1.35410 1.48769 1.78641 1.99163 2.12771 2.75984 2.91479 2.99544 3.78406 3.83724 3.89432 3.99498 4.11805 4.13853 4.15970 4.29020 4.30836 4.51239 4.54117 4.59010 4.61927 4.67104 4.74526 4.83559 4.86336 4.89738 4.98176 5.05452 5.25224 5.30354 5.35110 5.45426 5.51419 5.57701 5.73430 5.76211 5.95123 6.05144 6.19276 6.20574 6.92030 6.92817 7.36675 7.72642 8.57270 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.004129 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.378589 B = 6779.552442 C = 7954.654309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.116 4.116 5 C -0.078 4.078 6 C -0.129 4.129 7 C -0.118 4.118 8 C -0.102 4.102 9 C 0.481 3.519 10 O -0.612 6.612 11 N -0.474 5.474 12 C -0.337 4.337 13 H 0.102 0.898 14 C 0.046 3.954 15 N -0.882 5.882 16 Si 0.901 3.099 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.276 1.276 20 C 0.108 3.892 21 C -0.117 4.117 22 C 0.496 3.504 23 O -0.554 6.554 24 O -0.504 6.504 25 C -0.118 4.118 26 C -0.131 4.131 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.280 0.720 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.429 0.571 42 H 0.138 0.862 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -4.930 -7.549 9.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.153 4.153 4 C -0.134 4.134 5 C -0.078 4.078 6 C -0.146 4.146 7 C -0.136 4.136 8 C -0.140 4.140 9 C 0.272 3.728 10 O -0.498 6.498 11 N -0.195 5.195 12 C -0.464 4.464 13 H 0.120 0.880 14 C -0.159 4.159 15 N -0.519 5.519 16 Si 0.729 3.271 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.201 1.201 20 C -0.015 4.015 21 C -0.155 4.155 22 C 0.339 3.661 23 O -0.445 6.445 24 O -0.317 6.317 25 C -0.135 4.135 26 C -0.148 4.148 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.291 0.709 42 H 0.156 0.844 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.235 -5.307 -7.507 9.276 hybrid contribution -0.016 -0.276 1.696 1.718 sum 1.219 -5.583 -5.811 8.150 Atomic orbital electron populations 1.20830 0.89592 1.03260 1.03152 1.20328 0.97521 0.93031 0.99082 1.21221 0.94252 0.98518 1.01298 1.21603 0.94672 0.97977 0.99151 1.19270 0.93734 0.93609 1.01174 1.21774 0.91636 0.99172 1.02056 1.22983 0.99907 0.95776 0.94950 1.20959 1.00982 1.01473 0.90604 1.21068 0.84604 0.78903 0.88202 1.90526 1.31142 1.43594 1.84530 1.43840 1.28154 1.38835 1.08639 1.19027 0.98897 1.24380 1.04091 0.88018 1.25581 0.95442 0.96047 0.98874 1.69764 1.21318 1.25146 1.35653 0.86608 0.77247 0.81914 0.81343 1.19554 1.20720 1.20131 1.21393 0.94629 0.98941 0.86569 1.21569 0.98038 1.04131 0.91797 1.23330 0.77331 0.75113 0.90286 1.90702 1.63160 1.41167 1.49470 1.84498 1.43205 1.62423 1.41582 1.21487 0.94609 0.97658 0.99789 1.21235 0.94103 0.98272 1.01224 0.89765 0.90615 0.91674 0.85413 0.85433 0.83910 0.85906 0.87737 0.87907 0.91015 0.91547 0.92153 0.86578 0.86031 0.70942 0.84411 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 10.01 71.24 0.71 -1.49 16 2 C -0.10 -2.59 5.88 -19.81 -0.12 -2.71 16 3 C -0.13 -3.94 9.68 22.23 0.22 -3.72 16 4 C -0.12 -3.58 7.30 22.52 0.16 -3.42 16 5 C -0.08 -2.33 5.20 -20.12 -0.10 -2.43 16 6 C -0.13 -3.67 9.80 23.65 0.23 -3.43 16 7 C -0.12 -3.78 8.71 24.54 0.21 -3.56 16 8 C -0.10 -3.77 3.10 29.10 0.09 -3.68 16 9 C 0.48 21.43 7.58 87.66 0.66 22.09 16 10 O -0.61 -29.26 15.71 -3.07 -0.05 -29.30 16 11 N -0.47 -21.98 2.21 -635.53 -1.40 -23.38 16 12 C -0.34 -16.60 9.09 84.04 0.76 -15.83 16 13 H 0.10 5.10 7.21 -2.91 -0.02 5.08 16 14 C 0.05 2.37 5.29 84.93 0.45 2.82 16 15 N -0.88 -46.86 13.96 21.66 0.30 -46.56 16 16 Si 0.90 43.08 25.11 68.60 1.72 44.80 16 17 H -0.27 -12.85 6.49 99.48 0.65 -12.21 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 20 C 0.11 4.84 3.21 86.38 0.28 5.12 16 21 C -0.12 -4.26 6.09 29.85 0.18 -4.07 16 22 C 0.50 16.73 8.33 71.24 0.59 17.33 16 23 O -0.55 -22.35 16.74 21.95 0.37 -21.99 16 24 O -0.50 -12.34 13.42 -51.38 -0.69 -13.03 16 25 C -0.12 -3.13 9.79 22.52 0.22 -2.91 16 26 C -0.13 -3.23 9.68 22.23 0.22 -3.02 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 29 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.13 3.87 6.16 -2.91 -0.02 3.86 16 32 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.12 3.76 8.04 -2.91 -0.02 3.73 16 34 H 0.10 3.60 7.47 -2.39 -0.02 3.58 16 35 H 0.10 4.04 4.69 -2.39 -0.01 4.03 16 36 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 37 H 0.07 3.17 3.27 -2.39 -0.01 3.16 16 38 H 0.06 2.84 7.57 -2.38 -0.02 2.83 16 39 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 40 H 0.12 4.23 8.14 -2.39 -0.02 4.22 16 41 H 0.43 6.15 9.10 -74.06 -0.67 5.48 16 42 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 43 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -65.75 361.24 5.33 -60.41 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.31 Total: 31.96 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 4.77 Total: -2.92 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.10 Total: -69.94 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -0.37 Total: -64.32 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.72 Total: 44.80 kcal Total: -65.75 5.33 -60.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600398745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.692 kcal (2) G-P(sol) polarization free energy of solvation -65.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds