Wall clock time and date at job start Tue Mar 31 2020 11:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37820 * 120.13456 * 2 1 4 4 C 1.38380 * 120.36559 * 180.08775 * 3 2 1 5 5 C 1.38474 * 120.66695 * 359.95625 * 4 3 2 6 6 C 1.38515 * 119.65384 * 359.85079 * 5 4 3 7 7 C 1.39664 * 120.13033 * 179.72791 * 2 1 3 8 8 C 1.47387 * 120.15773 * 0.03751 * 7 2 1 9 9 O 1.21508 * 119.99796 * 113.93045 * 8 7 2 10 10 O 1.34754 * 120.00035 * 293.93390 * 8 7 2 11 11 N 1.39474 * 120.94798 * 180.36007 * 6 5 4 12 12 C 1.34772 * 120.51519 * 166.36779 * 11 6 5 13 13 O 1.21281 * 120.00018 * 329.40526 * 12 11 6 14 14 C 1.50699 * 119.99886 * 149.40779 * 12 11 6 15 15 C 1.53003 * 109.46984 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47285 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99698 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00269 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99803 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00179 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47100 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47335 * 119.99961 * 20 18 16 23 23 H 1.48494 * 109.47158 * 239.99993 * 20 18 16 24 24 C 1.46917 * 118.96334 * 346.34211 * 11 6 5 25 25 C 1.53434 * 107.78825 * 44.71238 * 24 11 6 26 26 C 1.50622 * 118.88768 * 179.60808 * 5 4 3 27 27 H 1.09001 * 109.47314 * 90.00007 * 1 2 3 28 28 H 1.08998 * 109.47182 * 329.99986 * 1 2 3 29 29 H 1.09001 * 109.47337 * 209.99543 * 1 2 3 30 30 H 1.07996 * 119.81147 * 0.06185 * 3 2 1 31 31 H 1.07997 * 119.67038 * 179.97438 * 4 3 2 32 32 H 0.96695 * 117.00220 * 180.02562 * 10 8 7 33 33 H 1.08994 * 109.47429 * 299.99345 * 14 12 11 34 34 H 1.08998 * 109.47112 * 60.00239 * 14 12 11 35 35 H 1.08997 * 109.47353 * 300.00372 * 15 14 12 36 36 H 1.09004 * 109.47002 * 60.00302 * 15 14 12 37 37 H 0.96999 * 119.99376 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.79379 * 164.28213 * 24 11 6 39 39 H 1.09000 * 109.80013 * 285.07834 * 24 11 6 40 40 H 1.08997 * 109.57718 * 56.71690 * 25 24 11 41 41 H 1.09007 * 109.57630 * 176.97885 * 25 24 11 42 42 H 1.09001 * 109.30194 * 279.88029 * 26 5 4 43 43 H 1.09002 * 109.30350 * 39.25924 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1919 0.0000 4 6 3.5827 1.1975 -0.0018 5 6 4.2937 0.0093 -0.0028 6 6 3.6128 -1.1969 0.0013 7 6 2.2080 -1.2079 0.0057 8 6 1.4775 -2.4880 0.0110 9 8 1.5477 -3.2314 -0.9476 10 8 0.7318 -2.8338 1.0788 11 7 4.3018 -2.4095 0.0079 12 6 3.6583 -3.5607 0.2854 13 8 2.7044 -3.5569 1.0344 14 6 4.1240 -4.8527 -0.3349 15 6 3.2293 -5.9988 0.1415 16 6 3.6946 -7.2908 -0.4793 17 1 4.5438 -7.2941 -1.1466 18 6 3.0362 -8.4685 -0.1956 19 7 2.0018 -8.4643 0.6166 20 14 3.6134 -10.0700 -0.9645 21 1 4.7886 -9.8066 -1.8334 22 1 3.9949 -11.0245 0.1072 23 1 2.5162 -10.6521 -1.7782 24 6 5.7398 -2.4124 -0.2928 25 6 6.3840 -1.2584 0.4866 26 6 5.7990 0.0621 -0.0138 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3634 -0.8900 0.5138 30 1 1.6580 2.1267 0.0010 31 1 4.1135 2.1380 -0.0022 32 1 0.2713 -3.6830 1.0362 33 1 4.0684 -4.7753 -1.4207 34 1 5.1540 -5.0484 -0.0368 35 1 3.2851 -6.0762 1.2273 36 1 2.1991 -5.8034 -0.1564 37 1 1.5384 -9.2928 0.8159 38 1 6.1802 -3.3596 0.0188 39 1 5.8937 -2.2681 -1.3622 40 1 6.1718 -1.3723 1.5496 41 1 7.4622 -1.2664 0.3264 42 1 6.1456 0.2476 -1.0304 43 1 6.1358 0.8731 0.6320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600499410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:05 Heat of formation + Delta-G solvation = -84.875530 kcal Electronic energy + Delta-G solvation = -27851.964362 eV Core-core repulsion = 24055.531068 eV Total energy + Delta-G solvation = -3796.433294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70310 -39.12796 -38.65566 -36.52053 -35.11980 -33.94810 -33.59994 -32.11632 -31.34846 -30.11288 -27.72395 -26.22854 -25.18305 -24.46446 -22.77211 -22.20556 -20.83017 -19.83053 -18.81102 -17.74941 -17.32065 -16.83822 -16.65386 -16.22813 -15.73280 -15.29191 -14.89823 -14.65446 -14.39127 -14.08797 -13.80568 -13.75228 -13.52510 -13.35781 -12.92705 -12.84499 -12.37667 -12.31597 -12.19365 -11.71498 -11.63501 -11.34122 -11.25067 -11.22348 -10.98729 -10.93139 -10.59728 -10.47891 -10.12079 -10.00334 -9.89072 -9.71795 -9.32750 -9.09489 -8.68109 -8.32864 -7.83475 -5.97298 -4.00821 0.97157 1.17302 2.24924 2.80809 3.29021 3.32527 3.39676 3.42982 3.54692 3.96816 4.36680 4.47033 4.55581 4.70352 4.74606 4.84873 4.96759 5.03315 5.18014 5.23644 5.38247 5.38635 5.41014 5.51022 5.56313 5.60101 5.67565 5.73593 5.82526 5.92818 5.99344 6.08933 6.16430 6.18127 6.25181 6.39402 6.55272 6.78009 6.92666 7.28786 7.38322 7.71381 7.85191 8.04649 8.13832 8.40665 8.67680 9.06050 9.62382 11.13935 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.004269 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.625945 B = 6557.453132 C = 7798.969500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 C -0.155 4.155 4 C -0.070 4.070 5 C -0.137 4.137 6 C 0.219 3.781 7 C -0.140 4.140 8 C 0.567 3.433 9 O -0.554 6.554 10 O -0.506 6.506 11 N -0.578 5.578 12 C 0.538 3.462 13 O -0.481 6.481 14 C -0.123 4.123 15 C 0.039 3.961 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.107 3.893 25 C -0.137 4.137 26 C -0.072 4.072 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.409 0.591 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.021 0.979 36 H 0.031 0.969 37 H 0.260 0.740 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 21.864 -0.795 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.022 4.022 3 C -0.175 4.175 4 C -0.089 4.089 5 C -0.140 4.140 6 C 0.122 3.878 7 C -0.144 4.144 8 C 0.417 3.583 9 O -0.450 6.450 10 O -0.318 6.318 11 N -0.301 5.301 12 C 0.337 3.663 13 O -0.360 6.360 14 C -0.163 4.163 15 C 0.001 3.999 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.014 4.014 25 C -0.175 4.175 26 C -0.109 4.109 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.267 0.733 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.456 21.791 -0.525 22.470 hybrid contribution 0.028 -1.412 -0.467 1.488 sum 5.483 20.379 -0.992 21.127 Atomic orbital electron populations 1.20968 0.90438 1.04019 1.02853 1.19776 0.96218 0.91166 0.95055 1.20753 0.94005 0.97158 1.05543 1.20973 0.93893 0.96872 0.97133 1.19292 0.95872 0.90910 1.07901 1.17404 0.89103 0.85941 0.95303 1.18923 0.91369 0.92538 1.11580 1.19364 0.74747 0.84522 0.79652 1.90985 1.64276 1.51794 1.37898 1.84478 1.60922 1.43404 1.42996 1.45942 1.10458 1.05051 1.68620 1.22136 0.81313 0.85532 0.77358 1.90320 1.27817 1.84388 1.33524 1.22016 1.02244 0.90988 1.01012 1.18932 0.94853 0.89348 0.96759 1.21201 1.14664 0.92255 1.28159 0.92599 1.24994 0.94959 0.99108 0.95194 1.70000 1.20208 1.27118 1.35487 0.86531 0.78670 0.83652 0.79092 1.19744 1.21025 1.20973 1.21987 0.77908 1.00852 1.00672 1.21901 1.00554 0.94106 1.00906 1.20355 0.90149 0.98168 1.02195 0.90697 0.90742 0.90211 0.85389 0.85355 0.73311 0.88875 0.90090 0.96051 0.95050 0.93032 0.88355 0.90319 0.90754 0.89324 0.90340 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.63 36.00 0.35 -1.16 16 2 C -0.02 -0.30 5.91 -104.24 -0.62 -0.92 16 3 C -0.16 -1.73 9.67 -39.68 -0.38 -2.12 16 4 C -0.07 -0.73 9.65 -39.44 -0.38 -1.11 16 5 C -0.14 -1.67 5.76 -104.47 -0.60 -2.27 16 6 C 0.22 3.55 6.27 -83.44 -0.52 3.03 16 7 C -0.14 -2.46 5.61 -104.80 -0.59 -3.05 16 8 C 0.57 11.64 3.06 34.45 0.11 11.74 16 9 O -0.55 -13.18 15.78 -27.24 -0.43 -13.61 16 10 O -0.51 -9.79 10.38 -49.04 -0.51 -10.30 16 11 N -0.58 -9.58 2.95 -112.65 -0.33 -9.92 16 12 C 0.54 11.07 4.85 -10.99 -0.05 11.01 16 13 O -0.48 -11.10 9.83 -27.26 -0.27 -11.37 16 14 C -0.12 -2.64 4.91 -27.88 -0.14 -2.77 16 15 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 16 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.11 1.25 6.05 -3.59 -0.02 1.23 16 25 C -0.14 -1.22 6.11 -26.58 -0.16 -1.39 16 26 C -0.07 -0.62 5.78 -28.00 -0.16 -0.78 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.08 1.07 6.15 -51.93 -0.32 0.75 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.41 7.21 9.11 45.56 0.42 7.63 16 33 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 34 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 35 H 0.02 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.03 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.10 1.07 6.60 -51.93 -0.34 0.73 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -36.89 347.42 -9.51 -46.40 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.21 Total: 4.68 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.71 Total: -1.34 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.40 Total: -36.53 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.21 Total: -35.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.89 -9.51 -46.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600499410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.477 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds