Wall clock time and date at job start Tue Mar 31 2020 11:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37820 * 120.13456 * 2 1 4 4 C 1.38380 * 120.36559 * 180.08775 * 3 2 1 5 5 C 1.38474 * 120.66695 * 359.95625 * 4 3 2 6 6 C 1.38515 * 119.65384 * 359.85079 * 5 4 3 7 7 C 1.39664 * 120.13033 * 179.72791 * 2 1 3 8 8 C 1.47387 * 120.15773 * 0.03751 * 7 2 1 9 9 O 1.21508 * 119.99796 * 113.93045 * 8 7 2 10 10 O 1.34754 * 120.00035 * 293.93390 * 8 7 2 11 11 N 1.39474 * 120.94798 * 180.36007 * 6 5 4 12 12 C 1.34772 * 120.51519 * 166.36779 * 11 6 5 13 13 O 1.21281 * 120.00018 * 329.40526 * 12 11 6 14 14 C 1.50699 * 119.99886 * 149.40779 * 12 11 6 15 15 C 1.53003 * 109.46984 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47285 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99698 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00269 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99803 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00179 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47100 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47335 * 119.99961 * 20 18 16 23 23 H 1.48494 * 109.47158 * 239.99993 * 20 18 16 24 24 C 1.46917 * 118.96334 * 346.34211 * 11 6 5 25 25 C 1.53434 * 107.78825 * 44.71238 * 24 11 6 26 26 C 1.50622 * 118.88768 * 179.60808 * 5 4 3 27 27 H 1.09001 * 109.47314 * 90.00007 * 1 2 3 28 28 H 1.08998 * 109.47182 * 329.99986 * 1 2 3 29 29 H 1.09001 * 109.47337 * 209.99543 * 1 2 3 30 30 H 1.07996 * 119.81147 * 0.06185 * 3 2 1 31 31 H 1.07997 * 119.67038 * 179.97438 * 4 3 2 32 32 H 0.96695 * 117.00220 * 180.02562 * 10 8 7 33 33 H 1.08994 * 109.47429 * 299.99345 * 14 12 11 34 34 H 1.08998 * 109.47112 * 60.00239 * 14 12 11 35 35 H 1.08997 * 109.47353 * 300.00372 * 15 14 12 36 36 H 1.09004 * 109.47002 * 60.00302 * 15 14 12 37 37 H 0.96999 * 119.99376 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.79379 * 164.28213 * 24 11 6 39 39 H 1.09000 * 109.80013 * 285.07834 * 24 11 6 40 40 H 1.08997 * 109.57718 * 56.71690 * 25 24 11 41 41 H 1.09007 * 109.57630 * 176.97885 * 25 24 11 42 42 H 1.09001 * 109.30194 * 279.88029 * 26 5 4 43 43 H 1.09002 * 109.30350 * 39.25924 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1919 0.0000 4 6 3.5827 1.1975 -0.0018 5 6 4.2937 0.0093 -0.0028 6 6 3.6128 -1.1969 0.0013 7 6 2.2080 -1.2079 0.0057 8 6 1.4775 -2.4880 0.0110 9 8 1.5477 -3.2314 -0.9476 10 8 0.7318 -2.8338 1.0788 11 7 4.3018 -2.4095 0.0079 12 6 3.6583 -3.5607 0.2854 13 8 2.7044 -3.5569 1.0344 14 6 4.1240 -4.8527 -0.3349 15 6 3.2293 -5.9988 0.1415 16 6 3.6946 -7.2908 -0.4793 17 1 4.5438 -7.2941 -1.1466 18 6 3.0362 -8.4685 -0.1956 19 7 2.0018 -8.4643 0.6166 20 14 3.6134 -10.0700 -0.9645 21 1 4.7886 -9.8066 -1.8334 22 1 3.9949 -11.0245 0.1072 23 1 2.5162 -10.6521 -1.7782 24 6 5.7398 -2.4124 -0.2928 25 6 6.3840 -1.2584 0.4866 26 6 5.7990 0.0621 -0.0138 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3634 -0.8900 0.5138 30 1 1.6580 2.1267 0.0010 31 1 4.1135 2.1380 -0.0022 32 1 0.2713 -3.6830 1.0362 33 1 4.0684 -4.7753 -1.4207 34 1 5.1540 -5.0484 -0.0368 35 1 3.2851 -6.0762 1.2273 36 1 2.1991 -5.8034 -0.1564 37 1 1.5384 -9.2928 0.8159 38 1 6.1802 -3.3596 0.0188 39 1 5.8937 -2.2681 -1.3622 40 1 6.1718 -1.3723 1.5496 41 1 7.4622 -1.2664 0.3264 42 1 6.1456 0.2476 -1.0304 43 1 6.1358 0.8731 0.6320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600499410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:05 Heat of formation + Delta-G solvation = -108.549518 kcal Electronic energy + Delta-G solvation = -27852.990943 eV Core-core repulsion = 24055.531068 eV Total energy + Delta-G solvation = -3797.459875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.01784 -40.40558 -40.03659 -37.67439 -36.74570 -35.71922 -34.99760 -33.38820 -32.87882 -31.39259 -28.68119 -28.06275 -26.41746 -25.62375 -24.26203 -23.34744 -22.44703 -20.98519 -20.06081 -19.28523 -18.82659 -18.52354 -17.99536 -17.75843 -17.22392 -16.55088 -16.36006 -16.04613 -15.74714 -15.35789 -14.88425 -14.77620 -14.64565 -14.50563 -14.27402 -14.19627 -14.04323 -13.44832 -13.29428 -13.25479 -13.10179 -12.84762 -12.66456 -12.50387 -12.28836 -12.11312 -12.07489 -11.93450 -11.76323 -11.68318 -11.54365 -11.31429 -11.24124 -10.83981 -10.61057 -9.68557 -8.92947 -8.22324 -6.36192 -0.18544 0.16088 0.89832 1.38272 1.40525 1.53303 1.60726 1.83956 2.39161 2.44624 2.69070 3.10943 3.37343 3.71854 3.74153 3.89932 3.92133 4.01629 4.06582 4.24405 4.28702 4.33374 4.37103 4.50249 4.57006 4.63776 4.67090 4.72742 4.80344 4.85919 5.00705 5.02100 5.10466 5.16545 5.23633 5.34160 5.40656 5.45388 5.51564 5.56125 5.77798 5.83870 5.93490 6.01626 6.11566 6.67758 6.81543 7.11328 7.33384 8.90649 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.004269 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.625945 B = 6557.453132 C = 7798.969500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.038 4.038 3 C -0.143 4.143 4 C -0.058 4.058 5 C -0.130 4.130 6 C 0.181 3.819 7 C -0.185 4.185 8 C 0.569 3.431 9 O -0.603 6.603 10 O -0.509 6.509 11 N -0.574 5.574 12 C 0.532 3.468 13 O -0.522 6.522 14 C -0.111 4.111 15 C 0.052 3.948 16 C -0.545 4.545 17 H 0.072 0.928 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.974 3.026 21 H -0.254 1.254 22 H -0.276 1.276 23 H -0.281 1.281 24 C 0.091 3.909 25 C -0.129 4.129 26 C -0.071 4.071 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.052 0.948 30 H 0.168 0.832 31 H 0.178 0.822 32 H 0.406 0.594 33 H 0.093 0.907 34 H 0.111 0.889 35 H -0.014 1.014 36 H -0.017 1.017 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 25.098 -1.824 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C -0.161 4.161 4 C -0.076 4.076 5 C -0.133 4.133 6 C 0.086 3.914 7 C -0.189 4.189 8 C 0.422 3.578 9 O -0.502 6.502 10 O -0.320 6.320 11 N -0.296 5.296 12 C 0.330 3.670 13 O -0.405 6.405 14 C -0.150 4.150 15 C 0.015 3.985 16 C -0.583 4.583 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.177 1.177 22 H -0.201 1.201 23 H -0.207 1.207 24 C -0.029 4.029 25 C -0.167 4.167 26 C -0.107 4.107 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.185 0.815 31 H 0.196 0.804 32 H 0.264 0.736 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.005 0.995 36 H 0.001 0.999 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.120 0.880 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.777 25.091 -1.560 26.628 hybrid contribution -1.022 -2.267 -0.118 2.490 sum 7.755 22.824 -1.678 24.164 Atomic orbital electron populations 1.21003 0.89720 1.04271 1.03209 1.20114 0.97115 0.91164 0.95503 1.21259 0.94820 0.97175 1.02889 1.21586 0.93733 0.98013 0.94263 1.19875 0.98169 0.89711 1.05563 1.17835 0.88797 0.86929 0.97854 1.19132 0.92514 0.91922 1.15286 1.20079 0.73794 0.85405 0.78548 1.90918 1.65874 1.53928 1.39506 1.84480 1.61006 1.43271 1.43242 1.45872 1.12002 1.04129 1.67603 1.21820 0.81088 0.86715 0.77385 1.90281 1.29609 1.85167 1.35485 1.21714 1.02404 0.90089 1.00824 1.18607 0.93577 0.91886 0.94463 1.21660 1.15229 0.92915 1.28447 0.90968 1.26105 0.94838 1.03643 0.95534 1.70174 1.21716 1.28431 1.37066 0.85268 0.78624 0.78011 0.78327 1.17719 1.20120 1.20701 1.22461 0.75315 1.02686 1.02389 1.21929 1.02433 0.93039 0.99300 1.20534 0.87190 0.98708 1.04296 0.90280 0.87433 0.92932 0.81466 0.80448 0.73577 0.88869 0.87076 0.99548 0.99854 0.92801 0.88186 0.88650 0.92388 0.85555 0.87982 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.63 71.24 0.69 -2.31 16 2 C -0.04 -1.05 5.91 -19.62 -0.12 -1.17 16 3 C -0.14 -2.63 9.67 22.20 0.21 -2.41 16 4 C -0.06 -0.91 9.65 22.36 0.22 -0.69 16 5 C -0.13 -2.74 5.76 -19.77 -0.11 -2.85 16 6 C 0.18 5.83 6.27 38.54 0.24 6.07 16 7 C -0.18 -6.76 5.61 -19.98 -0.11 -6.87 16 8 C 0.57 25.59 3.06 70.23 0.22 25.81 16 9 O -0.60 -31.69 15.78 27.43 0.43 -31.25 16 10 O -0.51 -22.18 10.38 -48.61 -0.50 -22.69 16 11 N -0.57 -19.35 2.95 -628.72 -1.86 -21.20 16 12 C 0.53 23.36 4.85 87.66 0.42 23.79 16 13 O -0.52 -26.44 9.83 28.35 0.28 -26.16 16 14 C -0.11 -5.02 4.91 29.85 0.15 -4.87 16 15 C 0.05 3.07 4.26 29.85 0.13 3.20 16 16 C -0.54 -32.36 9.11 25.60 0.23 -32.13 16 17 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 19 N -0.93 -60.28 13.29 21.45 0.28 -60.00 16 20 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 21 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 C 0.09 1.98 6.05 86.45 0.52 2.50 16 25 C -0.13 -1.84 6.11 30.69 0.19 -1.66 16 26 C -0.07 -0.85 5.78 29.77 0.17 -0.68 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.11 1.76 8.09 -2.39 -0.02 1.74 16 29 H 0.05 1.53 6.15 -2.39 -0.01 1.51 16 30 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.41 16.89 9.11 -74.06 -0.67 16.22 16 33 H 0.09 4.17 8.14 -2.39 -0.02 4.15 16 34 H 0.11 4.22 6.95 -2.39 -0.02 4.21 16 35 H -0.01 -0.89 8.10 -2.39 -0.02 -0.91 16 36 H -0.02 -1.15 8.10 -2.38 -0.02 -1.17 16 37 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.10 2.07 6.60 -2.38 -0.02 2.05 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.11 0.75 8.12 -2.39 -0.02 0.73 16 Total: -1.00 -90.03 347.42 4.54 -85.49 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.37 Total: 22.28 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 3.51 Total: 5.97 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.57 Total: -81.20 kcal Atomic # 8 Polarization: -80.31 SS G_CDS: 0.21 Total: -80.10 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -90.03 4.54 -85.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600499410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.055 kcal (2) G-P(sol) polarization free energy of solvation -90.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds