Wall clock time and date at job start Tue Mar 31 2020 11:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38276 * 119.92157 * 2 1 4 4 C 1.38258 * 119.82842 * 179.97438 * 3 2 1 5 5 C 1.37880 * 120.22176 * 359.52931 * 4 3 2 6 6 C 1.39589 * 120.28222 * 0.04069 * 5 4 3 7 7 C 1.38139 * 119.92738 * 179.27134 * 2 1 3 8 8 C 1.51215 * 130.97717 * 0.02562 * 7 2 1 9 9 C 1.53748 * 104.58190 * 179.97438 * 8 7 2 10 10 H 1.09001 * 110.29226 * 241.06513 * 9 8 7 11 11 C 1.50699 * 110.37934 * 118.97212 * 9 8 7 12 12 O 1.20823 * 120.00061 * 244.17017 * 11 9 8 13 13 O 1.34229 * 119.99865 * 64.16826 * 11 9 8 14 14 N 1.39835 * 129.34231 * 179.97438 * 6 5 4 15 15 C 1.34779 * 124.97293 * 0.03640 * 14 6 5 16 16 O 1.21289 * 120.00285 * 179.69500 * 15 14 6 17 17 C 1.50699 * 120.00037 * 359.69929 * 15 14 6 18 18 C 1.53006 * 109.47240 * 179.97438 * 17 15 14 19 19 C 1.52993 * 109.47481 * 180.02562 * 18 17 15 20 20 C 1.50696 * 109.47432 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99822 * 359.97438 * 20 19 18 22 22 C 1.37884 * 120.00126 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99707 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 119.99956 * 0.27447 * 22 20 19 25 25 H 1.48503 * 109.47407 * 269.72718 * 24 22 20 26 26 H 1.48505 * 109.47281 * 29.72474 * 24 22 20 27 27 H 1.48501 * 109.47274 * 149.72572 * 24 22 20 28 28 H 1.08994 * 109.46912 * 270.72390 * 1 2 3 29 29 H 1.08997 * 109.47457 * 30.73267 * 1 2 3 30 30 H 1.09010 * 109.46970 * 150.72944 * 1 2 3 31 31 H 1.07997 * 120.08323 * 359.51758 * 3 2 1 32 32 H 1.07999 * 119.88845 * 179.54452 * 4 3 2 33 33 H 1.08001 * 119.85919 * 180.02562 * 5 4 3 34 34 H 1.08991 * 110.41874 * 61.18731 * 8 7 2 35 35 H 1.09005 * 110.41274 * 298.73173 * 8 7 2 36 36 H 0.96706 * 117.00111 * 179.97438 * 13 11 9 37 37 H 1.09001 * 109.47358 * 60.00202 * 17 15 14 38 38 H 1.09000 * 109.47247 * 299.99628 * 17 15 14 39 39 H 1.08996 * 109.47261 * 59.99676 * 18 17 15 40 40 H 1.09000 * 109.46866 * 300.00069 * 18 17 15 41 41 H 1.08996 * 109.47340 * 59.99477 * 19 18 17 42 42 H 1.09004 * 109.46672 * 300.00239 * 19 18 17 43 43 H 0.97005 * 119.99656 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5794 1.1962 0.0005 5 6 4.2714 0.0037 0.0109 6 6 3.5822 -1.2101 0.0200 7 6 2.1962 -1.1971 0.0152 8 6 1.7015 -2.6259 0.0329 9 6 2.9810 -3.4784 0.0434 10 1 3.0212 -4.1107 -0.8436 11 6 3.0383 -4.3235 1.2898 12 8 3.9165 -4.1458 2.1004 13 8 2.1137 -5.2738 1.4994 14 7 4.0849 -2.5149 0.0305 15 6 5.3931 -2.8388 0.0346 16 8 5.7295 -4.0040 0.0495 17 6 6.4382 -1.7531 0.0207 18 6 7.8312 -2.3859 0.0293 19 6 8.8922 -1.2837 0.0158 20 6 10.2642 -1.9070 0.0249 21 1 10.3690 -2.9818 0.0394 22 6 11.3859 -1.1051 0.0149 23 7 12.5832 -1.6491 0.0223 24 14 11.2047 0.7540 -0.0023 25 1 11.1602 1.2341 -1.4068 26 1 9.9481 1.1354 0.6911 27 1 12.3617 1.3706 0.6952 28 1 -0.3633 0.0130 1.0275 29 1 -0.3634 0.8833 -0.5251 30 1 -0.3633 -0.8965 -0.5025 31 1 1.6569 2.1338 -0.0079 32 1 4.1191 2.1316 -0.0069 33 1 5.3514 0.0088 0.0116 34 1 1.1123 -2.8354 -0.8598 35 1 1.1127 -2.8133 0.9309 36 1 2.1920 -5.7906 2.3130 37 1 6.3201 -1.1237 0.9028 38 1 6.3199 -1.1464 -0.8771 39 1 7.9497 -3.0156 -0.8525 40 1 7.9492 -2.9924 0.9273 41 1 8.7736 -0.6544 0.8978 42 1 8.7743 -0.6769 -0.8820 43 1 13.3723 -1.0849 0.0149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600556057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:37 Heat of formation + Delta-G solvation = -95.851407 kcal Electronic energy + Delta-G solvation = -26554.081866 eV Core-core repulsion = 22757.172622 eV Total energy + Delta-G solvation = -3796.909244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90183 -39.99028 -39.01572 -36.73117 -36.20308 -34.58323 -33.73229 -32.07727 -31.21725 -30.19334 -28.47941 -27.00870 -25.09927 -24.30160 -22.73748 -21.76610 -21.35230 -19.93453 -19.42454 -18.42996 -17.46789 -17.14652 -16.79894 -16.53685 -16.08542 -15.62367 -15.25446 -15.02491 -14.65897 -14.44528 -13.92506 -13.81850 -13.61388 -13.52484 -13.14667 -12.95990 -12.63391 -12.60149 -12.56839 -12.35863 -12.09131 -11.78556 -11.69282 -11.65175 -11.24616 -11.02904 -10.80468 -10.71794 -10.38301 -10.14179 -9.89298 -9.71836 -9.57131 -9.14491 -8.88283 -8.50478 -8.06760 -6.00062 -3.97984 1.03567 1.08169 1.93695 2.14467 2.60997 2.90752 3.32123 3.39361 3.42143 3.54659 3.88018 4.05867 4.47699 4.50365 4.53776 4.65302 4.69781 4.90748 5.03510 5.07398 5.17521 5.22184 5.26055 5.31238 5.32962 5.40280 5.46556 5.47787 5.52493 5.72354 5.84941 6.00026 6.14475 6.21892 6.25283 6.33778 6.51601 6.63790 6.68750 6.89084 7.20630 7.35415 7.43798 7.61367 7.82306 8.00298 8.59455 9.06475 9.61677 11.13641 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.003698 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.929573 B = 7570.127417 C = 9287.805882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.039 4.039 3 C -0.147 4.147 4 C -0.077 4.077 5 C -0.162 4.162 6 C 0.161 3.839 7 C -0.147 4.147 8 C -0.067 4.067 9 C 0.148 3.852 10 H 0.128 0.872 11 C 0.470 3.530 12 O -0.484 6.484 13 O -0.515 6.515 14 N -0.547 5.547 15 C 0.532 3.468 16 O -0.498 6.498 17 C -0.141 4.141 18 C -0.089 4.089 19 C -0.013 4.013 20 C -0.519 4.519 21 H 0.073 0.927 22 C 0.065 3.935 23 N -0.904 5.904 24 Si 0.881 3.119 25 H -0.277 1.277 26 H -0.265 1.265 27 H -0.288 1.288 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.414 0.586 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.709 3.363 -0.562 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.039 4.039 3 C -0.166 4.166 4 C -0.096 4.096 5 C -0.182 4.182 6 C 0.065 3.935 7 C -0.150 4.150 8 C -0.105 4.105 9 C 0.043 3.957 10 H 0.146 0.854 11 C 0.308 3.692 12 O -0.369 6.369 13 O -0.327 6.327 14 N -0.272 5.272 15 C 0.324 3.676 16 O -0.370 6.370 17 C -0.181 4.181 18 C -0.127 4.127 19 C -0.051 4.051 20 C -0.557 4.557 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.543 5.543 24 Si 0.708 3.292 25 H -0.203 1.203 26 H -0.190 1.190 27 H -0.214 1.214 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.163 0.837 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.273 0.727 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.035 0.965 42 H 0.030 0.970 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.929 2.875 -0.670 30.074 hybrid contribution 0.225 0.528 0.607 0.836 sum -29.703 3.404 -0.063 29.898 Atomic orbital electron populations 1.20796 0.90931 1.02955 1.02499 1.19137 0.95795 0.90946 0.98035 1.20924 0.94224 0.97108 1.04331 1.20944 0.94116 0.97427 0.97075 1.21264 1.01761 0.89668 1.05531 1.18270 0.92631 0.84812 0.97777 1.19688 0.92284 0.94362 1.08672 1.20966 0.94610 0.89862 1.05027 1.20957 0.88035 0.91482 0.95264 0.85434 1.23390 0.78783 0.78925 0.88065 1.90801 1.34149 1.66583 1.45357 1.84451 1.52856 1.47287 1.48109 1.46034 1.05710 1.04300 1.71162 1.21273 0.80802 0.91640 0.73891 1.90723 1.79732 1.20622 1.45888 1.22252 0.95030 0.96789 1.03985 1.21348 0.89488 0.99117 1.02790 1.19599 0.94816 0.94456 0.96207 1.21138 0.88614 0.95396 1.50528 0.90929 1.25050 0.95207 0.98694 0.94669 1.69925 0.97618 1.35509 1.51273 0.86766 0.77878 0.86134 0.78430 1.20298 1.18973 1.21412 0.90965 0.91225 0.91444 0.85528 0.85000 0.83728 0.87555 0.88592 0.72710 0.88394 0.88420 0.91898 0.91818 0.96535 0.96961 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.88 36.01 0.36 -0.27 16 2 C -0.04 -0.33 5.88 -104.64 -0.62 -0.94 16 3 C -0.15 -1.23 9.71 -39.56 -0.38 -1.61 16 4 C -0.08 -0.73 10.02 -39.71 -0.40 -1.13 16 5 C -0.16 -1.88 8.88 -39.21 -0.35 -2.23 16 6 C 0.16 1.98 6.59 -83.57 -0.55 1.43 16 7 C -0.15 -1.46 6.07 -104.27 -0.63 -2.09 16 8 C -0.07 -0.54 5.97 -27.24 -0.16 -0.70 16 9 C 0.15 1.67 3.55 -68.68 -0.24 1.43 16 10 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 11 C 0.47 5.96 7.04 36.01 0.25 6.21 16 12 O -0.48 -8.36 15.78 -24.24 -0.38 -8.74 16 13 O -0.51 -4.44 13.42 -39.25 -0.53 -4.96 16 14 N -0.55 -7.72 2.68 -107.07 -0.29 -8.00 16 15 C 0.53 9.28 6.97 -10.99 -0.08 9.20 16 16 O -0.50 -10.32 15.14 -9.66 -0.15 -10.47 16 17 C -0.14 -2.38 3.53 -27.88 -0.10 -2.48 16 18 C -0.09 -1.91 4.44 -26.73 -0.12 -2.03 16 19 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 20 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 21 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 22 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 23 N -0.90 -28.58 13.96 55.43 0.77 -27.80 16 24 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.31 7.71 -51.92 -0.40 -0.09 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.15 1.71 4.21 -52.49 -0.22 1.49 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.67 7.70 -51.93 -0.40 0.27 16 36 H 0.41 2.02 9.10 45.56 0.41 2.43 16 37 H 0.10 1.53 6.89 -51.93 -0.36 1.18 16 38 H 0.10 1.43 6.94 -51.93 -0.36 1.07 16 39 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 40 H 0.06 1.47 8.10 -51.93 -0.42 1.04 16 41 H 0.02 0.39 7.19 -51.93 -0.37 0.02 16 42 H 0.01 0.28 7.58 -51.93 -0.39 -0.11 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -38.00 355.33 -8.50 -46.50 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.05 Total: 0.42 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -3.56 Total: -9.46 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.49 Total: -35.81 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -1.06 Total: -24.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.00 -8.50 -46.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600556057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.353 kcal (2) G-P(sol) polarization free energy of solvation -37.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds