Wall clock time and date at job start Tue Mar 31 2020 11:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38276 * 119.92157 * 2 1 4 4 C 1.38258 * 119.82842 * 179.97438 * 3 2 1 5 5 C 1.37880 * 120.22176 * 359.52931 * 4 3 2 6 6 C 1.39589 * 120.28222 * 0.04069 * 5 4 3 7 7 C 1.38139 * 119.92738 * 179.27134 * 2 1 3 8 8 C 1.51215 * 130.97717 * 0.02562 * 7 2 1 9 9 C 1.53748 * 104.58190 * 179.97438 * 8 7 2 10 10 H 1.09001 * 110.29226 * 241.06513 * 9 8 7 11 11 C 1.50699 * 110.37934 * 118.97212 * 9 8 7 12 12 O 1.20823 * 120.00061 * 244.17017 * 11 9 8 13 13 O 1.34229 * 119.99865 * 64.16826 * 11 9 8 14 14 N 1.39835 * 129.34231 * 179.97438 * 6 5 4 15 15 C 1.34779 * 124.97293 * 0.03640 * 14 6 5 16 16 O 1.21289 * 120.00285 * 179.69500 * 15 14 6 17 17 C 1.50699 * 120.00037 * 359.69929 * 15 14 6 18 18 C 1.53006 * 109.47240 * 179.97438 * 17 15 14 19 19 C 1.52993 * 109.47481 * 180.02562 * 18 17 15 20 20 C 1.50696 * 109.47432 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99822 * 359.97438 * 20 19 18 22 22 C 1.37884 * 120.00126 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99707 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 119.99956 * 0.27447 * 22 20 19 25 25 H 1.48503 * 109.47407 * 269.72718 * 24 22 20 26 26 H 1.48505 * 109.47281 * 29.72474 * 24 22 20 27 27 H 1.48501 * 109.47274 * 149.72572 * 24 22 20 28 28 H 1.08994 * 109.46912 * 270.72390 * 1 2 3 29 29 H 1.08997 * 109.47457 * 30.73267 * 1 2 3 30 30 H 1.09010 * 109.46970 * 150.72944 * 1 2 3 31 31 H 1.07997 * 120.08323 * 359.51758 * 3 2 1 32 32 H 1.07999 * 119.88845 * 179.54452 * 4 3 2 33 33 H 1.08001 * 119.85919 * 180.02562 * 5 4 3 34 34 H 1.08991 * 110.41874 * 61.18731 * 8 7 2 35 35 H 1.09005 * 110.41274 * 298.73173 * 8 7 2 36 36 H 0.96706 * 117.00111 * 179.97438 * 13 11 9 37 37 H 1.09001 * 109.47358 * 60.00202 * 17 15 14 38 38 H 1.09000 * 109.47247 * 299.99628 * 17 15 14 39 39 H 1.08996 * 109.47261 * 59.99676 * 18 17 15 40 40 H 1.09000 * 109.46866 * 300.00069 * 18 17 15 41 41 H 1.08996 * 109.47340 * 59.99477 * 19 18 17 42 42 H 1.09004 * 109.46672 * 300.00239 * 19 18 17 43 43 H 0.97005 * 119.99656 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5794 1.1962 0.0005 5 6 4.2714 0.0037 0.0109 6 6 3.5822 -1.2101 0.0200 7 6 2.1962 -1.1971 0.0152 8 6 1.7015 -2.6259 0.0329 9 6 2.9810 -3.4784 0.0434 10 1 3.0212 -4.1107 -0.8436 11 6 3.0383 -4.3235 1.2898 12 8 3.9165 -4.1458 2.1004 13 8 2.1137 -5.2738 1.4994 14 7 4.0849 -2.5149 0.0305 15 6 5.3931 -2.8388 0.0346 16 8 5.7295 -4.0040 0.0495 17 6 6.4382 -1.7531 0.0207 18 6 7.8312 -2.3859 0.0293 19 6 8.8922 -1.2837 0.0158 20 6 10.2642 -1.9070 0.0249 21 1 10.3690 -2.9818 0.0394 22 6 11.3859 -1.1051 0.0149 23 7 12.5832 -1.6491 0.0223 24 14 11.2047 0.7540 -0.0023 25 1 11.1602 1.2341 -1.4068 26 1 9.9481 1.1354 0.6911 27 1 12.3617 1.3706 0.6952 28 1 -0.3633 0.0130 1.0275 29 1 -0.3634 0.8833 -0.5251 30 1 -0.3633 -0.8965 -0.5025 31 1 1.6569 2.1338 -0.0079 32 1 4.1191 2.1316 -0.0069 33 1 5.3514 0.0088 0.0116 34 1 1.1123 -2.8354 -0.8598 35 1 1.1127 -2.8133 0.9309 36 1 2.1920 -5.7906 2.3130 37 1 6.3201 -1.1237 0.9028 38 1 6.3199 -1.1464 -0.8771 39 1 7.9497 -3.0156 -0.8525 40 1 7.9492 -2.9924 0.9273 41 1 8.7736 -0.6544 0.8978 42 1 8.7743 -0.6769 -0.8820 43 1 13.3723 -1.0849 0.0149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600556057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:36 Heat of formation + Delta-G solvation = -120.913255 kcal Electronic energy + Delta-G solvation = -26555.168629 eV Core-core repulsion = 22757.172622 eV Total energy + Delta-G solvation = -3797.996007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.83075 -40.92103 -40.13394 -37.62585 -37.14153 -36.29629 -34.81708 -33.96750 -32.08148 -31.02897 -30.16872 -27.64013 -26.28549 -25.55209 -23.87581 -22.78890 -22.33233 -21.49476 -20.44421 -19.34149 -18.95535 -18.40844 -18.16194 -17.58295 -16.98172 -16.82752 -16.31620 -16.22415 -15.82916 -15.52156 -15.33467 -15.02598 -14.80924 -14.39994 -14.34799 -13.91024 -13.80136 -13.57610 -13.43729 -13.25401 -13.14559 -13.02725 -12.83907 -12.65839 -12.59211 -12.26834 -12.01133 -11.90790 -11.82909 -11.64888 -11.59090 -11.35991 -11.27971 -11.15366 -10.77055 -9.53974 -8.92190 -8.29739 -6.35913 0.23533 0.39032 0.98419 1.16449 1.36997 1.41109 1.50282 1.53177 1.99462 2.37745 2.81226 3.05099 3.06364 3.33090 3.48816 3.82881 3.90595 3.97262 4.05058 4.09011 4.12848 4.29749 4.39856 4.54363 4.54991 4.62955 4.70519 4.74877 4.79692 4.85095 4.95666 4.96130 4.98406 5.07988 5.32634 5.41210 5.43575 5.45003 5.51442 5.57667 5.63646 5.67260 5.97751 6.20002 6.27526 6.71695 6.71922 6.83783 7.28333 8.87989 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.003698 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.929573 B = 7570.127417 C = 9287.805882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.179 4.179 6 C 0.121 3.879 7 C -0.145 4.145 8 C -0.057 4.057 9 C 0.136 3.864 10 H 0.141 0.859 11 C 0.473 3.527 12 O -0.540 6.540 13 O -0.497 6.497 14 N -0.546 5.546 15 C 0.528 3.472 16 O -0.548 6.548 17 C -0.129 4.129 18 C -0.080 4.080 19 C -0.007 4.007 20 C -0.541 4.541 21 H 0.019 0.981 22 C -0.002 4.002 23 N -0.956 5.956 24 Si 0.961 3.039 25 H -0.260 1.260 26 H -0.237 1.237 27 H -0.285 1.285 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.431 0.569 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.034 0.966 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.841 6.721 -1.136 35.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.041 4.041 3 C -0.160 4.160 4 C -0.102 4.102 5 C -0.199 4.199 6 C 0.027 3.973 7 C -0.148 4.148 8 C -0.093 4.093 9 C 0.031 3.969 10 H 0.158 0.842 11 C 0.315 3.685 12 O -0.429 6.429 13 O -0.310 6.310 14 N -0.270 5.270 15 C 0.320 3.680 16 O -0.425 6.425 17 C -0.168 4.168 18 C -0.118 4.118 19 C -0.044 4.044 20 C -0.579 4.579 21 H 0.037 0.963 22 C -0.198 4.198 23 N -0.597 5.597 24 Si 0.783 3.217 25 H -0.185 1.185 26 H -0.160 1.160 27 H -0.211 1.211 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.128 0.872 36 H 0.293 0.707 37 H 0.130 0.870 38 H 0.143 0.857 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -34.155 6.240 -1.248 34.743 hybrid contribution 1.414 -0.599 0.800 1.732 sum -32.741 5.641 -0.448 33.226 Atomic orbital electron populations 1.20875 0.88470 1.04344 1.03384 1.19540 0.97551 0.90262 0.96730 1.21343 0.93938 0.98366 1.02310 1.21219 0.94943 0.97322 0.96694 1.21361 1.01643 0.90405 1.06518 1.18575 0.94006 0.84079 1.00597 1.19974 0.91314 0.95795 1.07729 1.21078 0.93000 0.87910 1.07346 1.21369 0.88702 0.91836 0.94957 0.84194 1.23739 0.78111 0.78932 0.87767 1.90786 1.36410 1.68368 1.47344 1.84414 1.51135 1.46320 1.49133 1.45841 1.05101 1.05962 1.70108 1.21185 0.82310 0.90809 0.73647 1.90693 1.80861 1.22173 1.48724 1.22100 0.92058 0.96720 1.05953 1.21092 0.92176 0.98050 1.00497 1.19518 0.92296 0.95097 0.97475 1.21498 0.91999 0.93398 1.51012 0.96265 1.26196 0.94329 1.05564 0.93719 1.70106 0.98876 1.38177 1.52507 0.85506 0.79066 0.77571 0.79593 1.18504 1.15983 1.21076 0.90168 0.89809 0.90230 0.82778 0.83159 0.84595 0.84114 0.87171 0.70728 0.86983 0.85741 0.93752 0.94787 0.95268 0.94775 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.88 71.24 0.70 0.00 16 2 C -0.04 -0.52 5.88 -19.88 -0.12 -0.64 16 3 C -0.14 -1.80 9.71 22.28 0.22 -1.58 16 4 C -0.08 -1.33 10.02 22.19 0.22 -1.11 16 5 C -0.18 -3.86 8.88 22.51 0.20 -3.66 16 6 C 0.12 2.83 6.59 38.28 0.25 3.08 16 7 C -0.15 -2.47 6.07 -19.64 -0.12 -2.59 16 8 C -0.06 -0.72 5.97 30.26 0.18 -0.54 16 9 C 0.14 2.92 3.55 44.49 0.16 3.08 16 10 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 11 C 0.47 11.88 7.04 71.24 0.50 12.38 16 12 O -0.54 -19.31 15.78 27.22 0.43 -18.88 16 13 O -0.50 -7.84 13.42 -51.41 -0.69 -8.53 16 14 N -0.55 -15.29 2.68 -611.06 -1.63 -16.92 16 15 C 0.53 19.04 6.97 87.66 0.61 19.65 16 16 O -0.55 -24.16 15.14 11.49 0.17 -23.99 16 17 C -0.13 -4.40 3.53 29.85 0.11 -4.30 16 18 C -0.08 -3.59 4.44 30.59 0.14 -3.45 16 19 C -0.01 -0.32 4.04 29.84 0.12 -0.20 16 20 C -0.54 -33.35 9.66 25.60 0.25 -33.10 16 21 H 0.02 1.33 7.99 -2.91 -0.02 1.30 16 22 C 0.00 -0.12 5.47 84.66 0.46 0.34 16 23 N -0.96 -62.62 13.96 21.45 0.30 -62.32 16 24 Si 0.96 44.53 27.47 68.60 1.88 46.42 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.24 -9.85 6.53 99.48 0.65 -9.20 16 27 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.08 0.32 8.09 -2.39 -0.02 0.30 16 30 H 0.08 0.33 7.71 -2.38 -0.02 0.31 16 31 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.14 3.03 4.21 -2.91 -0.01 3.02 16 34 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 1.13 7.70 -2.38 -0.02 1.11 16 36 H 0.43 3.67 9.10 -74.05 -0.67 3.00 16 37 H 0.11 3.48 6.89 -2.39 -0.02 3.47 16 38 H 0.12 3.52 6.94 -2.39 -0.02 3.51 16 39 H 0.04 2.10 8.10 -2.39 -0.02 2.08 16 40 H 0.03 1.68 8.10 -2.39 -0.02 1.66 16 41 H 0.03 1.35 7.19 -2.39 -0.02 1.33 16 42 H 0.03 1.52 7.58 -2.39 -0.02 1.50 16 43 H 0.27 16.15 8.31 -92.70 -0.77 15.38 16 Total: -1.00 -89.10 355.33 4.66 -84.44 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.32 Total: 12.44 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 3.88 Total: -12.65 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -1.34 Total: -79.24 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.09 Total: -51.40 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -89.10 4.66 -84.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600556057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.475 kcal (2) G-P(sol) polarization free energy of solvation -89.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds