Wall clock time and date at job start Tue Mar 31 2020 11:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31355 * 1 3 3 Si 1.86801 * 119.99662 * 2 1 4 4 H 1.48496 * 109.47363 * 274.15456 * 3 2 1 5 5 H 1.48501 * 109.47061 * 34.15514 * 3 2 1 6 6 H 1.48506 * 109.47018 * 154.15186 * 3 2 1 7 7 C 1.39050 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99454 * 341.26705 * 7 2 1 9 9 N 1.36872 * 119.99833 * 161.26772 * 7 2 1 10 10 C 1.46495 * 120.00181 * 322.20030 * 9 7 2 11 11 C 1.50701 * 109.47532 * 275.67879 * 10 9 7 12 12 O 1.20832 * 119.99761 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00529 * 179.97438 * 11 10 9 14 14 C 1.34772 * 119.99635 * 142.20559 * 9 7 2 15 15 O 1.21597 * 120.00287 * 5.38464 * 14 9 7 16 16 C 1.47734 * 120.00176 * 185.37974 * 14 9 7 17 17 C 1.39660 * 120.15064 * 134.29010 * 16 14 9 18 18 C 1.37918 * 119.84870 * 180.02562 * 17 16 14 19 19 C 1.38399 * 120.14893 * 359.97438 * 18 17 16 20 20 C 1.38353 * 120.30610 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.92636 * 180.02562 * 20 19 18 22 22 C 1.54267 * 110.03195 * 57.88966 * 21 20 19 23 23 C 1.54961 * 104.15810 * 217.14116 * 22 21 20 24 24 C 1.54892 * 102.78284 * 37.88527 * 23 22 21 25 25 C 1.53877 * 110.03059 * 300.66849 * 21 20 19 26 26 C 1.37960 * 120.15267 * 0.02562 * 20 19 18 27 27 H 0.97006 * 120.00663 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47473 * 35.68050 * 10 9 7 29 29 H 1.09000 * 109.47254 * 155.68398 * 10 9 7 30 30 H 0.96698 * 117.00264 * 180.02562 * 13 11 10 31 31 H 1.08011 * 120.07854 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.92366 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.84529 * 180.02562 * 19 18 17 34 34 H 1.08998 * 110.01854 * 179.28212 * 21 20 19 35 35 H 1.09001 * 110.48138 * 335.78025 * 22 21 20 36 36 H 1.08989 * 110.48683 * 98.42831 * 22 21 20 37 37 H 1.09006 * 110.71577 * 279.57069 * 23 22 21 38 38 H 1.08999 * 110.92203 * 156.29642 * 23 22 21 39 39 H 1.08998 * 110.48561 * 203.40536 * 24 23 22 40 40 H 1.08993 * 110.59711 * 80.81724 * 24 23 22 41 41 H 1.08992 * 110.03480 * 238.56602 * 25 21 20 42 42 H 1.09003 * 110.03331 * 359.95677 * 25 21 20 43 43 H 1.08000 * 120.08216 * 180.27516 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4071 2.0972 -1.3963 5 1 1.4915 2.6257 0.7861 6 1 3.5862 1.4165 0.6104 7 6 2.0089 -1.2041 -0.0005 8 1 1.5118 -2.1148 0.2994 9 7 3.3233 -1.2352 -0.3812 10 6 3.7873 -0.3872 -1.4819 11 6 3.5256 -1.0797 -2.7945 12 8 3.0044 -2.1697 -2.8091 13 8 3.8705 -0.4853 -3.9475 14 6 4.1905 -2.0461 0.2565 15 8 3.7884 -2.8209 1.1030 16 6 5.6296 -1.9938 -0.0729 17 6 6.5825 -1.9688 0.9478 18 6 7.9244 -1.9194 0.6332 19 6 8.3275 -1.8953 -0.6906 20 6 7.3890 -1.9210 -1.7068 21 6 7.8376 -1.8950 -3.1453 22 6 8.7729 -3.0885 -3.4288 23 6 9.8336 -2.5159 -4.4026 24 6 10.0586 -1.0827 -3.8600 25 6 8.6543 -0.6201 -3.4197 26 6 6.0434 -1.9703 -1.4063 27 1 -0.4851 0.8400 0.0004 28 1 3.2528 0.5625 -1.4593 29 1 4.8566 -0.2049 -1.3743 30 1 3.6823 -0.9682 -4.7639 31 1 6.2692 -1.9880 1.9813 32 1 8.6622 -1.9004 1.4216 33 1 9.3796 -1.8571 -0.9314 34 1 6.9721 -1.9335 -3.8067 35 1 9.2457 -3.4298 -2.5078 36 1 8.2212 -3.9020 -3.8997 37 1 9.4462 -2.4870 -5.4211 38 1 10.7558 -3.0951 -4.3580 39 1 10.4452 -0.4337 -4.6458 40 1 10.7397 -1.0974 -3.0092 41 1 8.1858 -0.0404 -4.2149 42 1 8.7256 -0.0198 -2.5126 43 1 5.3120 -1.9948 -2.2005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:13 Heat of formation + Delta-G solvation = -86.905345 kcal Electronic energy + Delta-G solvation = -27558.484446 eV Core-core repulsion = 23761.963133 eV Total energy + Delta-G solvation = -3796.521313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54015 -39.54883 -38.54399 -37.04201 -35.77415 -34.87870 -32.37585 -31.77516 -30.84566 -28.82887 -28.18472 -27.49755 -25.55468 -23.04963 -22.18248 -21.78908 -20.80602 -20.35301 -18.64209 -17.82963 -17.40365 -16.83003 -16.66527 -16.05436 -16.01843 -15.45101 -15.17230 -14.99267 -14.75586 -14.14366 -13.65599 -13.53729 -13.48116 -13.16125 -12.91584 -12.69464 -12.56295 -12.28100 -12.09516 -11.86357 -11.43423 -11.33507 -11.27188 -11.22325 -11.09479 -11.04828 -10.82087 -10.77064 -10.58512 -10.51364 -10.16524 -10.00150 -9.27945 -8.82394 -8.65009 -8.47841 -8.01641 -6.49829 -4.09209 1.26735 1.49823 2.60771 2.89587 3.07819 3.12576 3.16728 3.61125 3.93676 4.00157 4.27545 4.42673 4.52755 4.57002 4.83214 4.98086 5.01187 5.11975 5.28287 5.30099 5.34118 5.39204 5.41360 5.45500 5.49960 5.54514 5.58526 5.68996 5.73065 5.75300 5.77290 5.88063 6.05183 6.08581 6.11026 6.17653 6.23083 6.54853 6.64952 6.68600 6.83576 7.06788 7.37401 8.12448 8.27606 8.36722 8.78936 9.13775 9.53216 10.61575 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.004856 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.876262 B = 5764.372364 C = 6414.210291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.060 3.940 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.310 4.310 8 H 0.113 0.887 9 N -0.440 5.440 10 C 0.091 3.909 11 C 0.455 3.545 12 O -0.484 6.484 13 O -0.525 6.525 14 C 0.514 3.486 15 O -0.541 6.541 16 C -0.102 4.102 17 C -0.080 4.080 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.078 4.078 21 C -0.053 4.053 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.106 4.106 27 H 0.277 0.723 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.401 0.599 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.920 1.920 -8.902 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.147 4.147 3 Si 0.688 3.312 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.438 4.438 8 H 0.130 0.870 9 N -0.162 5.162 10 C -0.035 4.035 11 C 0.295 3.705 12 O -0.369 6.369 13 O -0.337 6.337 14 C 0.304 3.696 15 O -0.421 6.421 16 C -0.106 4.106 17 C -0.099 4.099 18 C -0.139 4.139 19 C -0.128 4.128 20 C -0.078 4.078 21 C -0.072 4.072 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.155 4.155 26 C -0.125 4.125 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.259 0.741 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 19.393 1.520 -8.070 21.060 hybrid contribution -0.040 0.673 -0.711 0.979 sum 19.353 2.193 -8.780 21.364 Atomic orbital electron populations 1.69686 1.06077 1.28108 1.44991 1.25383 0.95290 0.98109 0.95910 0.87183 0.81583 0.84128 0.78325 1.19584 1.20432 1.18094 1.19095 0.82958 0.96758 1.44949 0.86962 1.43244 1.09445 1.38308 1.25154 1.21756 1.02866 0.95782 0.83106 1.24388 0.75085 0.85016 0.86032 1.90753 1.37804 1.20999 1.87303 1.84577 1.78425 1.53478 1.17199 1.18146 0.84347 0.84230 0.82910 1.90680 1.78651 1.38278 1.34476 1.20338 0.94988 1.01491 0.93767 1.21174 0.92055 0.97466 0.99177 1.21048 0.95517 1.00968 0.96350 1.20987 0.99025 1.00511 0.92276 1.19726 0.92678 1.00342 0.95090 1.20784 0.98613 0.95389 0.92399 1.22514 0.96352 0.96977 0.99635 1.22519 0.98693 0.96056 0.99004 1.22371 0.96990 0.96404 1.00385 1.22263 0.94909 0.96705 1.01669 1.21414 0.95542 0.99975 0.95565 0.91252 0.87955 0.86745 0.74055 0.85223 0.85740 0.86100 0.90342 0.91060 0.91539 0.91553 0.91691 0.91821 0.91729 0.91461 0.91227 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.57 13.95 55.50 0.77 -23.79 16 2 C 0.06 1.65 5.38 -17.45 -0.09 1.56 16 3 Si 0.86 19.62 24.84 -169.99 -4.22 15.40 16 4 H -0.27 -5.66 6.70 56.52 0.38 -5.28 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.31 -8.94 9.24 -15.00 -0.14 -9.08 16 8 H 0.11 3.67 7.87 -52.49 -0.41 3.25 16 9 N -0.44 -11.04 1.73 -117.21 -0.20 -11.24 16 10 C 0.09 1.90 4.46 -5.20 -0.02 1.87 16 11 C 0.46 9.00 5.94 36.01 0.21 9.21 16 12 O -0.48 -11.28 16.87 -18.76 -0.32 -11.60 16 13 O -0.52 -7.73 13.42 -39.24 -0.53 -8.26 16 14 C 0.51 12.66 7.22 -12.38 -0.09 12.57 16 15 O -0.54 -15.20 16.85 5.28 0.09 -15.11 16 16 C -0.10 -1.99 5.05 -104.97 -0.53 -2.52 16 17 C -0.08 -1.32 9.70 -39.17 -0.38 -1.70 16 18 C -0.12 -1.57 10.03 -39.64 -0.40 -1.97 16 19 C -0.11 -1.33 8.10 -39.48 -0.32 -1.65 16 20 C -0.08 -1.06 4.68 -104.68 -0.49 -1.55 16 21 C -0.05 -0.58 3.13 -90.65 -0.28 -0.87 16 22 C -0.12 -1.12 6.27 -25.03 -0.16 -1.28 16 23 C -0.13 -0.97 6.91 -24.70 -0.17 -1.14 16 24 C -0.12 -0.96 6.83 -25.07 -0.17 -1.13 16 25 C -0.12 -1.10 6.24 -25.61 -0.16 -1.26 16 26 C -0.11 -1.80 7.07 -39.16 -0.28 -2.08 16 27 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.10 2.19 2.74 -51.93 -0.14 2.05 16 29 H 0.11 2.06 5.27 -51.93 -0.27 1.79 16 30 H 0.40 4.01 9.10 45.56 0.41 4.42 16 31 H 0.13 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.16 7.77 -52.49 -0.41 0.75 16 34 H 0.08 0.89 7.90 -51.93 -0.41 0.48 16 35 H 0.07 0.69 6.90 -51.93 -0.36 0.33 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.68 7.28 -51.93 -0.38 0.30 16 43 H 0.12 2.09 4.24 -52.49 -0.22 1.87 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -34.15 347.18 -7.37 -41.52 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.73 Total: 8.86 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.47 Total: -1.01 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.57 Total: -35.04 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.75 Total: -34.96 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.22 Total: 15.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.15 -7.37 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.384 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds