Wall clock time and date at job start Tue Mar 31 2020 11:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47515 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47107 * 300.00277 * 3 2 1 6 6 H 1.48500 * 109.46951 * 59.99620 * 3 2 1 7 7 C 1.38651 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00418 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00406 * 185.39567 * 9 7 2 11 11 C 1.38955 * 120.03067 * 185.69451 * 10 9 7 12 12 C 1.38130 * 120.07565 * 179.97438 * 11 10 9 13 13 C 1.38188 * 120.14525 * 359.97438 * 12 11 10 14 14 C 1.38966 * 120.06136 * 0.02562 * 13 12 11 15 15 N 1.39678 * 120.03827 * 180.02562 * 14 13 12 16 16 C 1.46498 * 120.00062 * 0.02562 * 15 14 13 17 17 H 1.08996 * 112.83177 * 46.09448 * 16 15 14 18 18 C 1.53632 * 113.51940 * 275.12961 * 16 15 14 19 19 C 1.53510 * 87.67230 * 269.42735 * 18 16 15 20 20 H 1.08997 * 115.96419 * 217.66969 * 19 18 16 21 21 C 1.54681 * 113.40444 * 80.30281 * 19 18 16 22 22 C 1.54883 * 102.83096 * 228.75823 * 21 19 18 23 23 H 1.09004 * 110.48138 * 279.24023 * 22 21 19 24 24 C 1.50696 * 110.48795 * 156.72866 * 22 21 19 25 25 O 1.20823 * 120.00371 * 241.45538 * 24 22 21 26 26 O 1.34231 * 119.99724 * 61.45950 * 24 22 21 27 27 C 1.56480 * 104.39185 * 38.20182 * 22 21 19 28 28 C 1.53821 * 113.52232 * 177.05747 * 16 15 14 29 29 H 1.09003 * 115.62508 * 208.35781 * 28 16 15 30 30 C 1.38722 * 120.02926 * 5.96084 * 10 9 7 31 31 H 0.97004 * 120.00434 * 0.02562 * 1 2 3 32 32 H 1.07998 * 119.96129 * 359.96838 * 11 10 9 33 33 H 1.08002 * 119.92844 * 180.02562 * 12 11 10 34 34 H 1.08004 * 119.96978 * 180.02562 * 13 12 11 35 35 H 0.97000 * 119.99629 * 180.02562 * 15 14 13 36 36 H 1.08994 * 113.53581 * 24.14879 * 18 16 15 37 37 H 1.09008 * 113.52580 * 154.71315 * 18 16 15 38 38 H 1.09001 * 110.74408 * 347.09353 * 21 19 18 39 39 H 1.09006 * 110.73921 * 110.24406 * 21 19 18 40 40 H 0.96698 * 117.00078 * 180.02562 * 26 24 22 41 41 H 1.08999 * 110.20320 * 217.51028 * 27 22 21 42 42 H 1.08995 * 110.85447 * 95.44113 * 27 22 21 43 43 H 1.07999 * 120.07432 * 0.02727 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0695 -3.5043 0.1127 11 6 1.4537 -4.7449 0.0009 12 6 2.2005 -5.9013 0.1154 13 6 3.5619 -5.8287 0.3408 14 6 4.1838 -4.5911 0.4535 15 7 5.5601 -4.5182 0.6808 16 6 6.3488 -5.7470 0.8000 17 1 6.1181 -6.4747 0.0221 18 6 6.3468 -6.3419 2.2164 19 6 7.5967 -5.4986 2.5048 20 1 8.3571 -5.9699 3.1275 21 6 7.2783 -4.0221 2.8382 22 6 8.2548 -3.2442 1.9216 23 1 9.2493 -3.2089 2.3665 24 6 7.7423 -1.8500 1.6676 25 8 7.4827 -1.4975 0.5415 26 8 7.5742 -0.9997 2.6926 27 6 8.2754 -4.0651 0.5896 28 6 7.8558 -5.4943 0.9770 29 1 8.5126 -6.2789 0.6013 30 6 3.4349 -3.4276 0.3455 31 1 -0.4851 0.8400 -0.0004 32 1 0.3899 -4.8051 -0.1755 33 1 1.7194 -6.8643 0.0278 34 1 4.1432 -6.7346 0.4295 35 1 5.9935 -3.6540 0.7598 36 1 5.4795 -6.0514 2.8093 37 1 6.5320 -7.4159 2.2376 38 1 6.2439 -3.7847 2.5899 39 1 7.4798 -3.8115 3.8886 40 1 7.2428 -0.1164 2.4804 41 1 9.2803 -4.0727 0.1676 42 1 7.5704 -3.6519 -0.1317 43 1 3.9150 -2.4645 0.4374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:32 Heat of formation + Delta-G solvation = -62.089257 kcal Electronic energy + Delta-G solvation = -27182.853631 eV Core-core repulsion = 23387.408424 eV Total energy + Delta-G solvation = -3795.445207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52268 -39.85451 -38.77085 -36.57594 -36.22897 -33.95356 -32.73928 -32.09320 -29.43868 -28.90878 -27.87242 -26.03200 -25.19233 -23.33851 -22.71448 -21.70123 -20.68934 -20.18751 -18.61672 -18.29933 -17.68612 -17.51327 -16.76402 -16.41633 -15.77282 -15.55740 -14.93588 -14.67343 -14.21630 -14.12673 -13.99457 -13.52962 -13.46324 -13.21201 -12.87640 -12.77671 -12.48861 -12.24722 -11.89306 -11.75390 -11.59732 -11.53468 -11.49047 -11.25826 -11.03824 -10.84238 -10.70292 -10.54584 -10.46574 -10.35934 -10.34393 -10.22950 -9.36017 -9.24628 -8.71665 -7.30825 -6.72295 -6.37377 -3.95983 2.07200 2.42561 2.60996 2.88289 3.15925 3.17541 3.23063 3.69195 3.90895 4.03250 4.25513 4.38833 4.63756 4.79891 4.82980 4.87806 5.09851 5.13504 5.18233 5.21256 5.30139 5.38839 5.40998 5.53497 5.63251 5.74812 5.75538 5.82634 5.93677 6.03113 6.04397 6.08258 6.25831 6.33400 6.41790 6.43774 6.69443 6.72511 7.09907 7.21220 7.43454 7.53750 7.72276 7.76901 8.07101 8.09434 8.23033 9.09282 9.82149 10.81138 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.005147 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.537600 B = 5438.861244 C = 7483.266594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.386 4.386 8 H 0.090 0.910 9 O -0.179 6.179 10 C 0.189 3.811 11 C -0.235 4.235 12 C -0.042 4.042 13 C -0.274 4.274 14 C 0.248 3.752 15 N -0.738 5.738 16 C 0.144 3.856 17 H 0.082 0.918 18 C -0.150 4.150 19 C -0.108 4.108 20 H 0.091 0.909 21 C -0.110 4.110 22 C -0.088 4.088 23 H 0.115 0.885 24 C 0.477 3.523 25 O -0.506 6.506 26 O -0.515 6.515 27 C -0.114 4.114 28 C -0.121 4.121 29 H 0.110 0.890 30 C -0.300 4.300 31 H 0.268 0.732 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.396 0.604 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.413 0.587 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.468 -9.699 5.882 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.462 4.462 8 H 0.107 0.893 9 O -0.082 6.082 10 C 0.134 3.866 11 C -0.256 4.256 12 C -0.060 4.060 13 C -0.297 4.297 14 C 0.147 3.853 15 N -0.373 5.373 16 C 0.037 3.963 17 H 0.100 0.900 18 C -0.189 4.189 19 C -0.127 4.127 20 H 0.110 0.890 21 C -0.147 4.147 22 C -0.107 4.107 23 H 0.133 0.867 24 C 0.319 3.681 25 O -0.393 6.393 26 O -0.328 6.328 27 C -0.152 4.152 28 C -0.140 4.140 29 H 0.128 0.872 30 C -0.324 4.324 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.235 0.765 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.272 0.728 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.163 -9.927 5.624 21.449 hybrid contribution 0.565 1.853 -0.079 1.939 sum 18.728 -8.074 5.545 21.135 Atomic orbital electron populations 1.70049 1.05859 1.27329 1.46783 1.25245 0.95795 0.98682 0.96808 0.85709 0.79224 0.80696 0.78209 1.19165 1.20145 1.20219 1.21332 0.91713 0.80915 1.52289 0.89273 1.83996 1.34160 1.11499 1.78543 1.19073 0.89482 0.87820 0.90180 1.20034 0.99815 0.90022 1.15728 1.20381 0.93090 0.96522 0.96055 1.20082 0.95055 0.94772 1.19764 1.17465 0.82394 0.93610 0.91841 1.44672 1.04875 1.06572 1.81153 1.21549 0.90044 0.88034 0.96684 0.89968 1.23329 0.98071 0.99157 0.98329 1.23218 0.98617 0.95144 0.95696 0.89042 1.22546 0.99931 0.93104 0.99153 1.22380 1.01606 0.87596 0.99135 0.86750 1.23436 0.74344 0.87904 0.82457 1.90782 1.46761 1.77544 1.24195 1.84498 1.78927 1.28530 1.40802 1.22505 1.03356 0.93854 0.95454 1.23670 0.96189 0.97302 0.96801 0.87179 1.20503 0.94547 0.96990 1.20384 0.92220 0.86955 0.87238 0.87690 0.76528 0.90383 0.89539 0.89019 0.90064 0.72805 0.90528 0.88824 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.02 13.67 55.48 0.76 -25.27 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.39 -11.24 9.44 30.89 0.29 -10.94 16 8 H 0.09 2.47 5.30 -52.49 -0.28 2.20 16 9 O -0.18 -5.31 9.76 0.04 0.00 -5.31 16 10 C 0.19 4.81 6.64 -39.14 -0.26 4.55 16 11 C -0.24 -5.24 9.99 -39.36 -0.39 -5.63 16 12 C -0.04 -0.78 10.03 -39.64 -0.40 -1.17 16 13 C -0.27 -4.93 9.27 -39.33 -0.36 -5.30 16 14 C 0.25 4.79 6.65 -83.81 -0.56 4.23 16 15 N -0.74 -11.53 3.69 -51.45 -0.19 -11.72 16 16 C 0.14 1.70 3.31 -67.18 -0.22 1.48 16 17 H 0.08 0.97 7.32 -51.93 -0.38 0.59 16 18 C -0.15 -1.51 7.36 -26.14 -0.19 -1.70 16 19 C -0.11 -0.95 4.97 -88.44 -0.44 -1.39 16 20 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 21 C -0.11 -1.12 5.39 -24.85 -0.13 -1.25 16 22 C -0.09 -0.87 3.21 -88.91 -0.29 -1.16 16 23 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 24 C 0.48 6.03 7.00 36.00 0.25 6.28 16 25 O -0.51 -8.21 16.00 -18.75 -0.30 -8.51 16 26 O -0.52 -5.58 13.40 -39.26 -0.53 -6.11 16 27 C -0.11 -1.17 5.33 -24.38 -0.13 -1.30 16 28 C -0.12 -1.10 4.86 -88.68 -0.43 -1.53 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 C -0.30 -6.96 8.98 -39.20 -0.35 -7.32 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.61 6.52 -52.48 -0.34 1.27 16 35 H 0.40 6.33 4.10 -40.82 -0.17 6.16 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.09 1.21 5.55 -51.93 -0.29 0.92 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.41 3.23 9.10 45.56 0.41 3.65 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.25 5.37 -51.93 -0.28 0.97 16 43 H 0.12 2.92 5.71 -52.49 -0.30 2.62 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -34.16 345.70 -8.34 -42.50 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -4.56 Total: 14.10 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -3.71 Total: -21.17 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.57 Total: -36.98 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.83 Total: -19.93 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.16 -8.34 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.591 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds