Wall clock time and date at job start Tue Mar 31 2020 11:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86793 * 120.00391 * 2 1 4 4 H 1.48507 * 109.47337 * 270.00175 * 3 2 1 5 5 H 1.48503 * 109.47394 * 29.99772 * 3 2 1 6 6 H 1.48500 * 109.47617 * 149.99918 * 3 2 1 7 7 C 1.38658 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99866 * 359.97438 * 7 2 1 9 9 O 1.34834 * 120.00082 * 179.97438 * 7 2 1 10 10 C 1.35749 * 116.99977 * 185.07527 * 9 7 2 11 11 C 1.38955 * 120.02904 * 174.48566 * 10 9 7 12 12 C 1.38131 * 120.07769 * 180.02562 * 11 10 9 13 13 C 1.38190 * 120.14172 * 359.97438 * 12 11 10 14 14 C 1.38959 * 120.06427 * 0.02562 * 13 12 11 15 15 N 1.39670 * 120.04170 * 180.02562 * 14 13 12 16 16 C 1.46507 * 119.99913 * 359.97438 * 15 14 13 17 17 H 1.08988 * 113.54031 * 29.77334 * 16 15 14 18 18 C 1.56723 * 114.57460 * 255.49819 * 16 15 14 19 19 C 1.49484 * 80.91826 * 201.53895 * 18 16 15 20 20 H 1.08999 * 113.11103 * 294.81296 * 19 18 16 21 21 C 1.50678 * 131.22156 * 137.02476 * 19 18 16 22 22 C 1.55764 * 104.15513 * 236.56582 * 21 19 18 23 23 H 1.09001 * 110.36531 * 127.78238 * 22 21 19 24 24 C 1.50706 * 110.36763 * 249.99136 * 22 21 19 25 25 O 1.20831 * 119.99568 * 118.54710 * 24 22 21 26 26 O 1.34219 * 120.00382 * 298.27720 * 24 22 21 27 27 C 1.56227 * 104.82837 * 8.83333 * 22 21 19 28 28 C 1.49533 * 113.97337 * 165.59043 * 16 15 14 29 29 H 1.08994 * 114.77520 * 44.50151 * 28 16 15 30 30 C 1.38724 * 120.03142 * 354.76837 * 10 9 7 31 31 H 0.97004 * 119.99428 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.96484 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.92631 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.96817 * 180.02562 * 13 12 11 35 35 H 0.97001 * 120.00288 * 180.02562 * 15 14 13 36 36 H 1.09004 * 114.62469 * 88.53139 * 18 16 15 37 37 H 1.09007 * 114.66632 * 314.54276 * 18 16 15 38 38 H 1.08998 * 110.49656 * 117.90164 * 21 19 18 39 39 H 1.08993 * 110.60850 * 355.28901 * 21 19 18 40 40 H 0.96703 * 117.00567 * 180.27373 * 26 24 22 41 41 H 1.09004 * 111.02582 * 144.36731 * 27 22 21 42 42 H 1.08999 * 111.02462 * 268.26795 * 27 22 21 43 43 H 1.07998 * 120.07023 * 0.02562 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4057 -0.1086 11 6 5.3559 -2.4712 -0.2310 12 6 5.9839 -3.6966 -0.3410 13 6 5.2400 -4.8611 -0.3292 14 6 3.8570 -4.8025 -0.2070 15 7 3.1056 -5.9798 -0.1946 16 6 3.7755 -7.2775 -0.3109 17 1 4.7850 -7.2846 0.0997 18 6 3.6384 -7.9582 -1.7159 19 6 3.9516 -9.1688 -0.8969 20 1 4.9527 -9.1469 -0.4665 21 6 3.3597 -10.5544 -0.9064 22 6 2.8753 -10.7718 0.5580 23 1 1.8320 -11.0872 0.5695 24 6 3.7391 -11.7948 1.2497 25 8 4.3760 -11.4849 2.2287 26 8 3.7968 -13.0514 0.7817 27 6 3.0315 -9.3760 1.2421 28 6 2.9113 -8.4422 0.0535 29 1 1.9019 -8.4078 -0.3563 30 6 3.2228 -3.5724 -0.1022 31 1 -0.4849 0.8401 -0.0004 32 1 5.9402 -1.5629 -0.2410 33 1 7.0585 -3.7446 -0.4364 34 1 5.7339 -5.8177 -0.4149 35 1 2.1402 -5.9382 -0.1096 36 1 4.4123 -7.6817 -2.4320 37 1 2.6316 -7.9405 -2.1337 38 1 4.1178 -11.2915 -1.1709 39 1 2.5191 -10.6078 -1.5982 40 1 4.3614 -13.6731 1.2611 41 1 2.2302 -9.2004 1.9600 42 1 4.0078 -9.2805 1.7173 43 1 2.1477 -3.5237 -0.0122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:35 Heat of formation + Delta-G solvation = -16.207284 kcal Electronic energy + Delta-G solvation = -25621.298713 eV Core-core repulsion = 21827.843098 eV Total energy + Delta-G solvation = -3793.455615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99267 -40.27994 -39.04792 -36.97301 -36.51361 -34.85170 -32.89372 -32.23171 -29.38267 -29.02675 -28.03213 -26.11124 -25.15176 -23.29086 -22.21299 -21.89972 -20.98079 -20.43929 -19.62460 -18.34976 -17.83216 -17.47073 -16.98344 -16.23390 -15.93281 -15.21448 -15.06734 -14.76335 -14.60360 -14.31815 -13.91866 -13.83594 -13.59377 -13.36572 -13.01692 -12.73919 -12.64743 -12.21255 -12.08210 -12.05800 -11.97146 -11.67419 -11.60076 -11.30652 -11.15434 -11.00859 -10.82925 -10.78608 -10.70688 -10.54085 -10.17603 -9.62041 -9.37928 -9.26300 -8.78358 -7.44596 -6.81552 -6.36584 -4.03123 1.81699 2.31928 2.47502 2.60778 3.25853 3.29348 3.30691 3.44895 3.79408 4.27826 4.28714 4.32171 4.42172 4.44928 4.61278 4.72815 4.77129 4.96808 5.04010 5.13874 5.18112 5.24805 5.34580 5.41973 5.47854 5.61344 5.63726 5.64988 5.79046 5.92825 5.94813 5.98301 6.08572 6.15348 6.18646 6.33981 6.53771 6.60498 6.98308 7.24857 7.30561 7.50644 7.55280 7.84075 7.94644 8.08325 8.21730 8.99767 9.64668 10.71404 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025480 B = 0.002421 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.654026 B =11563.338140 C =12035.357146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.385 4.385 8 H 0.105 0.895 9 O -0.219 6.219 10 C 0.195 3.805 11 C -0.238 4.238 12 C -0.041 4.041 13 C -0.272 4.272 14 C 0.248 3.752 15 N -0.740 5.740 16 C 0.164 3.836 17 H 0.117 0.883 18 C -0.127 4.127 19 C -0.157 4.157 20 H 0.097 0.903 21 C -0.085 4.085 22 C -0.088 4.088 23 H 0.114 0.886 24 C 0.485 3.515 25 O -0.512 6.512 26 O -0.517 6.517 27 C -0.094 4.094 28 C -0.153 4.153 29 H 0.107 0.893 30 C -0.290 4.290 31 H 0.278 0.722 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.409 0.591 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.584 -23.616 -1.690 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.461 4.461 8 H 0.123 0.877 9 O -0.123 6.123 10 C 0.142 3.858 11 C -0.258 4.258 12 C -0.060 4.060 13 C -0.295 4.295 14 C 0.147 3.853 15 N -0.369 5.369 16 C 0.057 3.943 17 H 0.135 0.865 18 C -0.167 4.167 19 C -0.176 4.176 20 H 0.115 0.885 21 C -0.122 4.122 22 C -0.107 4.107 23 H 0.132 0.868 24 C 0.327 3.673 25 O -0.400 6.400 26 O -0.329 6.329 27 C -0.131 4.131 28 C -0.172 4.172 29 H 0.125 0.875 30 C -0.314 4.314 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.268 0.732 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.509 -23.012 -1.595 23.968 hybrid contribution 0.006 0.059 0.430 0.434 sum 6.515 -22.954 -1.165 23.889 Atomic orbital electron populations 1.69649 1.05557 1.28342 1.48640 1.24461 0.95021 0.98784 0.95831 0.86190 0.80363 0.81490 0.78914 1.19940 1.20902 1.18334 1.20752 0.77019 0.96496 1.51859 0.87726 1.83583 1.22516 1.25835 1.80407 1.18808 0.91372 0.84846 0.90726 1.20027 0.91863 0.97774 1.16162 1.20373 0.98081 0.91471 0.96081 1.20132 0.91872 0.97715 1.19772 1.17503 0.90597 0.85472 0.91728 1.44653 1.08087 1.02278 1.81908 1.22348 0.96546 0.80461 0.94921 0.86502 1.23264 1.02453 0.93839 0.97096 1.22997 0.99454 0.92962 1.02198 0.88485 1.21344 1.01229 0.96474 0.93186 1.22651 0.99404 0.92675 0.95984 0.86774 1.23455 0.80009 0.81852 0.82003 1.90737 1.42835 1.80128 1.26255 1.84540 1.66940 1.22075 1.59351 1.21892 1.04121 0.90280 0.96838 1.23944 0.99146 0.97154 0.96975 0.87507 1.20626 1.00754 0.90483 1.19515 0.91184 0.86978 0.87083 0.87712 0.76816 0.91210 0.88948 0.90920 0.89962 0.73216 0.90763 0.89425 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.96 55.48 0.77 -24.95 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.90 21.97 28.62 -169.99 -4.86 17.11 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.39 -10.98 9.94 30.89 0.31 -10.68 16 8 H 0.11 3.04 5.43 -52.49 -0.29 2.75 16 9 O -0.22 -5.88 8.58 0.04 0.00 -5.88 16 10 C 0.20 4.61 6.65 -39.14 -0.26 4.35 16 11 C -0.24 -4.86 9.99 -39.36 -0.39 -5.25 16 12 C -0.04 -0.72 10.03 -39.64 -0.40 -1.11 16 13 C -0.27 -4.61 9.26 -39.33 -0.36 -4.97 16 14 C 0.25 4.49 6.65 -83.82 -0.56 3.93 16 15 N -0.74 -10.52 5.62 -66.73 -0.38 -10.89 16 16 C 0.16 1.79 3.84 -82.19 -0.32 1.47 16 17 H 0.12 1.31 5.84 -51.94 -0.30 1.01 16 18 C -0.13 -1.18 7.93 -43.73 -0.35 -1.52 16 19 C -0.16 -1.25 4.24 -105.02 -0.45 -1.69 16 20 H 0.10 0.82 7.37 -51.93 -0.38 0.43 16 21 C -0.08 -0.56 6.25 -26.42 -0.17 -0.72 16 22 C -0.09 -0.63 3.50 -88.56 -0.31 -0.94 16 23 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 24 C 0.48 4.13 7.49 36.01 0.27 4.40 16 25 O -0.51 -6.11 16.31 -18.75 -0.31 -6.42 16 26 O -0.52 -3.17 13.31 -39.23 -0.52 -3.69 16 27 C -0.09 -0.82 5.89 -25.69 -0.15 -0.97 16 28 C -0.15 -1.34 3.85 -107.24 -0.41 -1.75 16 29 H 0.11 0.87 7.51 -51.93 -0.39 0.48 16 30 C -0.29 -6.32 9.01 -39.20 -0.35 -6.67 16 31 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.10 1.50 6.17 -52.49 -0.32 1.18 16 35 H 0.40 5.39 8.69 -40.82 -0.35 5.04 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.82 7.53 -51.92 -0.39 0.43 16 38 H 0.07 0.47 7.68 -51.93 -0.40 0.07 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.41 0.92 9.10 45.56 0.41 1.34 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.91 7.13 -51.93 -0.37 0.54 16 43 H 0.13 2.98 5.63 -52.49 -0.30 2.68 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -32.72 352.84 -8.72 -41.44 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.75 Total: 8.44 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -3.99 Total: -20.48 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.40 Total: -35.84 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.83 Total: -15.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.86 Total: 17.11 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.72 -8.72 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.233 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds