Wall clock time and date at job start Tue Mar 31 2020 11:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86793 * 120.00391 * 2 1 4 4 H 1.48507 * 109.47337 * 270.00175 * 3 2 1 5 5 H 1.48503 * 109.47394 * 29.99772 * 3 2 1 6 6 H 1.48500 * 109.47617 * 149.99918 * 3 2 1 7 7 C 1.38658 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99866 * 359.97438 * 7 2 1 9 9 O 1.34834 * 120.00082 * 179.97438 * 7 2 1 10 10 C 1.35749 * 116.99977 * 185.07527 * 9 7 2 11 11 C 1.38955 * 120.02904 * 174.48566 * 10 9 7 12 12 C 1.38131 * 120.07769 * 180.02562 * 11 10 9 13 13 C 1.38190 * 120.14172 * 359.97438 * 12 11 10 14 14 C 1.38959 * 120.06427 * 0.02562 * 13 12 11 15 15 N 1.39670 * 120.04170 * 180.02562 * 14 13 12 16 16 C 1.46507 * 119.99913 * 359.97438 * 15 14 13 17 17 H 1.08988 * 113.54031 * 29.77334 * 16 15 14 18 18 C 1.56723 * 114.57460 * 255.49819 * 16 15 14 19 19 C 1.49484 * 80.91826 * 201.53895 * 18 16 15 20 20 H 1.08999 * 113.11103 * 294.81296 * 19 18 16 21 21 C 1.50678 * 131.22156 * 137.02476 * 19 18 16 22 22 C 1.55764 * 104.15513 * 236.56582 * 21 19 18 23 23 H 1.09001 * 110.36531 * 127.78238 * 22 21 19 24 24 C 1.50706 * 110.36763 * 249.99136 * 22 21 19 25 25 O 1.20831 * 119.99568 * 118.54710 * 24 22 21 26 26 O 1.34219 * 120.00382 * 298.27720 * 24 22 21 27 27 C 1.56227 * 104.82837 * 8.83333 * 22 21 19 28 28 C 1.49533 * 113.97337 * 165.59043 * 16 15 14 29 29 H 1.08994 * 114.77520 * 44.50151 * 28 16 15 30 30 C 1.38724 * 120.03142 * 354.76837 * 10 9 7 31 31 H 0.97004 * 119.99428 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.96484 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.92631 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.96817 * 180.02562 * 13 12 11 35 35 H 0.97001 * 120.00288 * 180.02562 * 15 14 13 36 36 H 1.09004 * 114.62469 * 88.53139 * 18 16 15 37 37 H 1.09007 * 114.66632 * 314.54276 * 18 16 15 38 38 H 1.08998 * 110.49656 * 117.90164 * 21 19 18 39 39 H 1.08993 * 110.60850 * 355.28901 * 21 19 18 40 40 H 0.96703 * 117.00567 * 180.27373 * 26 24 22 41 41 H 1.09004 * 111.02582 * 144.36731 * 27 22 21 42 42 H 1.08999 * 111.02462 * 268.26795 * 27 22 21 43 43 H 1.07998 * 120.07023 * 0.02562 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4057 -0.1086 11 6 5.3559 -2.4712 -0.2310 12 6 5.9839 -3.6966 -0.3410 13 6 5.2400 -4.8611 -0.3292 14 6 3.8570 -4.8025 -0.2070 15 7 3.1056 -5.9798 -0.1946 16 6 3.7755 -7.2775 -0.3109 17 1 4.7850 -7.2846 0.0997 18 6 3.6384 -7.9582 -1.7159 19 6 3.9516 -9.1688 -0.8969 20 1 4.9527 -9.1469 -0.4665 21 6 3.3597 -10.5544 -0.9064 22 6 2.8753 -10.7718 0.5580 23 1 1.8320 -11.0872 0.5695 24 6 3.7391 -11.7948 1.2497 25 8 4.3760 -11.4849 2.2287 26 8 3.7968 -13.0514 0.7817 27 6 3.0315 -9.3760 1.2421 28 6 2.9113 -8.4422 0.0535 29 1 1.9019 -8.4078 -0.3563 30 6 3.2228 -3.5724 -0.1022 31 1 -0.4849 0.8401 -0.0004 32 1 5.9402 -1.5629 -0.2410 33 1 7.0585 -3.7446 -0.4364 34 1 5.7339 -5.8177 -0.4149 35 1 2.1402 -5.9382 -0.1096 36 1 4.4123 -7.6817 -2.4320 37 1 2.6316 -7.9405 -2.1337 38 1 4.1178 -11.2915 -1.1709 39 1 2.5191 -10.6078 -1.5982 40 1 4.3614 -13.6731 1.2611 41 1 2.2302 -9.2004 1.9600 42 1 4.0078 -9.2805 1.7173 43 1 2.1477 -3.5237 -0.0122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:34 Heat of formation + Delta-G solvation = -37.414577 kcal Electronic energy + Delta-G solvation = -25622.218330 eV Core-core repulsion = 21827.843098 eV Total energy + Delta-G solvation = -3794.375232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72260 -41.02942 -40.67340 -38.55908 -37.14592 -35.92863 -34.43157 -33.81487 -30.82238 -30.05126 -29.27707 -27.13114 -26.81405 -24.24161 -23.46233 -22.97061 -21.85753 -21.66593 -20.44040 -19.71431 -19.14842 -18.85903 -17.76909 -17.18080 -16.92325 -16.78702 -16.33967 -15.91291 -15.66926 -15.45146 -15.38788 -15.22555 -14.76334 -14.52695 -14.36508 -14.11732 -13.92039 -13.54317 -13.45015 -13.12203 -12.76791 -12.63990 -12.54643 -12.36716 -12.30233 -12.15694 -12.10855 -11.96167 -11.85070 -11.67343 -11.38301 -11.33729 -10.96069 -10.63027 -10.14371 -9.15879 -8.47656 -8.19581 -6.19600 0.75831 0.89749 1.18020 1.32131 1.36938 1.53442 2.07807 2.30177 2.56123 2.70182 2.83557 3.16107 3.25966 3.58298 3.63561 3.73949 3.79494 3.97377 4.15144 4.23114 4.41354 4.48309 4.54119 4.58065 4.61379 4.64844 4.72642 4.76742 4.78826 4.92999 4.99497 5.04249 5.08062 5.14170 5.24633 5.33695 5.43395 5.46715 5.49217 5.61951 5.77503 5.86390 5.92686 6.20085 6.63226 6.87340 6.87771 6.98598 7.65438 8.64188 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025480 B = 0.002421 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.654026 B =11563.338140 C =12035.357146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.394 4.394 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.158 3.842 11 C -0.253 4.253 12 C -0.028 4.028 13 C -0.258 4.258 14 C 0.254 3.746 15 N -0.734 5.734 16 C 0.145 3.855 17 H 0.118 0.882 18 C -0.118 4.118 19 C -0.143 4.143 20 H 0.094 0.906 21 C -0.078 4.078 22 C -0.084 4.084 23 H 0.136 0.864 24 C 0.489 3.511 25 O -0.553 6.553 26 O -0.510 6.510 27 C -0.095 4.095 28 C -0.152 4.152 29 H 0.118 0.882 30 C -0.312 4.312 31 H 0.284 0.716 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.426 0.574 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -26.039 -2.668 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.471 4.471 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.108 3.892 11 C -0.273 4.273 12 C -0.046 4.046 13 C -0.281 4.281 14 C 0.149 3.851 15 N -0.361 5.361 16 C 0.041 3.959 17 H 0.136 0.864 18 C -0.157 4.157 19 C -0.162 4.162 20 H 0.112 0.888 21 C -0.116 4.116 22 C -0.103 4.103 23 H 0.154 0.846 24 C 0.333 3.667 25 O -0.444 6.444 26 O -0.324 6.324 27 C -0.133 4.133 28 C -0.171 4.171 29 H 0.136 0.864 30 C -0.336 4.336 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.288 0.712 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.424 -25.538 -2.589 27.016 hybrid contribution -0.447 0.406 0.731 0.948 sum 7.977 -25.132 -1.858 26.433 Atomic orbital electron populations 1.69731 1.06844 1.29456 1.50648 1.25271 0.95898 1.02090 0.95707 0.85227 0.78766 0.77501 0.79277 1.19040 1.19207 1.18867 1.20696 0.78213 0.95988 1.52184 0.90274 1.83524 1.21185 1.27670 1.83015 1.19408 0.92910 0.84453 0.92431 1.20303 0.90482 0.99696 1.16851 1.20877 1.00277 0.90062 0.93397 1.20613 0.91160 0.99342 1.16969 1.17616 0.91604 0.85430 0.90403 1.44879 1.08235 1.02443 1.80554 1.22772 0.96905 0.79164 0.97106 0.86416 1.23186 1.02889 0.93813 0.95784 1.22902 0.99016 0.93496 1.00759 0.88826 1.21334 1.01938 0.95381 0.92929 1.22656 1.00430 0.91335 0.95835 0.84584 1.23670 0.79233 0.82526 0.81246 1.90732 1.44639 1.80906 1.28136 1.84501 1.67118 1.21517 1.59234 1.21844 1.02974 0.91583 0.96876 1.23900 0.99714 0.95923 0.97578 0.86383 1.20590 0.99628 0.92021 1.21381 0.90682 0.86217 0.82648 0.84094 0.76727 0.91308 0.88307 0.90371 0.88235 0.71224 0.91017 0.91338 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.96 21.61 0.30 -55.89 16 2 C 0.01 0.48 5.49 84.83 0.47 0.95 16 3 Si 0.97 46.57 28.62 68.60 1.96 48.53 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.39 -23.85 9.94 67.92 0.68 -23.18 16 8 H 0.08 5.01 5.43 -2.91 -0.02 5.00 16 9 O -0.25 -13.90 8.58 -22.76 -0.20 -14.10 16 10 C 0.16 7.71 6.65 22.56 0.15 7.86 16 11 C -0.25 -10.17 9.99 22.42 0.22 -9.95 16 12 C -0.03 -0.88 10.03 22.23 0.22 -0.65 16 13 C -0.26 -7.99 9.26 22.43 0.21 -7.78 16 14 C 0.25 8.99 6.65 38.20 0.25 9.25 16 15 N -0.73 -20.16 5.62 -365.05 -2.05 -22.21 16 16 C 0.15 2.85 3.84 35.75 0.14 2.99 16 17 H 0.12 2.30 5.84 -2.39 -0.01 2.29 16 18 C -0.12 -1.83 7.93 19.58 0.16 -1.67 16 19 C -0.14 -1.83 4.24 -20.12 -0.09 -1.91 16 20 H 0.09 1.31 7.37 -2.39 -0.02 1.29 16 21 C -0.08 -0.75 6.25 30.80 0.19 -0.56 16 22 C -0.08 -0.97 3.50 -9.46 -0.03 -1.00 16 23 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 24 C 0.49 7.32 7.49 71.24 0.53 7.85 16 25 O -0.55 -12.66 16.31 21.95 0.36 -12.30 16 26 O -0.51 -4.87 13.31 -51.31 -0.68 -5.55 16 27 C -0.10 -1.51 5.89 31.27 0.18 -1.32 16 28 C -0.15 -2.31 3.85 -21.56 -0.08 -2.40 16 29 H 0.12 1.59 7.51 -2.39 -0.02 1.57 16 30 C -0.31 -14.19 9.01 22.52 0.20 -13.99 16 31 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.14 3.38 6.17 -2.91 -0.02 3.37 16 35 H 0.40 10.80 8.69 -92.71 -0.81 10.00 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.45 7.53 -2.38 -0.02 1.44 16 38 H 0.08 0.72 7.68 -2.39 -0.02 0.71 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.43 0.88 9.10 -74.06 -0.67 0.21 16 41 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.07 1.37 7.13 -2.39 -0.02 1.35 16 43 H 0.10 5.17 5.63 -2.91 -0.02 5.16 16 Total: -1.00 -75.14 352.84 2.69 -72.45 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.41 Total: 24.57 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 3.40 Total: -35.50 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.75 Total: -78.10 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.52 Total: -31.95 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.96 Total: 48.53 kcal Total: -75.14 2.69 -72.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.040 kcal (2) G-P(sol) polarization free energy of solvation -75.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds