Wall clock time and date at job start Tue Mar 31 2020 11:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86798 * 120.00227 * 2 1 4 4 H 1.48500 * 109.47172 * 89.99691 * 3 2 1 5 5 H 1.48506 * 109.47256 * 209.99927 * 3 2 1 6 6 H 1.48503 * 109.47192 * 329.99818 * 3 2 1 7 7 C 1.38655 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00396 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00058 * 174.94227 * 9 7 2 11 11 C 1.38958 * 120.03120 * 185.26479 * 10 9 7 12 12 C 1.38139 * 120.07586 * 179.74543 * 11 10 9 13 13 C 1.38192 * 120.14188 * 0.55362 * 12 11 10 14 14 C 1.38966 * 120.06356 * 359.69859 * 13 12 11 15 15 N 1.39670 * 120.04030 * 180.02562 * 14 13 12 16 16 C 1.46499 * 119.99961 * 359.97438 * 15 14 13 17 17 H 1.09008 * 113.57597 * 20.58120 * 16 15 14 18 18 C 1.56725 * 114.62318 * 246.08953 * 16 15 14 19 19 C 1.49807 * 81.20491 * 201.65867 * 18 16 15 20 20 H 1.09002 * 113.84215 * 290.88168 * 19 18 16 21 21 C 1.51635 * 129.33087 * 134.33046 * 19 18 16 22 22 C 1.56231 * 101.48169 * 226.99714 * 21 19 18 23 23 H 1.09001 * 110.36428 * 267.37497 * 22 21 19 24 24 C 1.50697 * 110.36673 * 145.16034 * 22 21 19 25 25 O 1.20826 * 119.99616 * 241.45192 * 24 22 21 26 26 O 1.34231 * 120.00506 * 61.45354 * 24 22 21 27 27 C 1.56373 * 104.83450 * 26.01477 * 22 21 19 28 28 C 1.49495 * 114.62102 * 154.99933 * 16 15 14 29 29 H 1.08997 * 113.10261 * 46.44277 * 28 16 15 30 30 C 1.38725 * 120.02958 * 5.53904 * 10 9 7 31 31 H 0.97005 * 119.99974 * 0.02562 * 1 2 3 32 32 H 1.07993 * 119.96066 * 0.02576 * 11 10 9 33 33 H 1.07998 * 119.92777 * 180.28007 * 12 11 10 34 34 H 1.08002 * 119.96679 * 179.72429 * 13 12 11 35 35 H 0.96994 * 119.99748 * 179.97438 * 15 14 13 36 36 H 1.08995 * 114.57230 * 314.73554 * 18 16 15 37 37 H 1.09000 * 114.57749 * 88.57729 * 18 16 15 38 38 H 1.08999 * 111.02070 * 345.04627 * 21 19 18 39 39 H 1.09003 * 111.02187 * 108.90622 * 21 19 18 40 40 H 0.96700 * 117.00102 * 179.97438 * 26 24 22 41 41 H 1.09004 * 111.00990 * 250.53122 * 27 22 21 42 42 H 1.09009 * 110.26294 * 127.67903 * 27 22 21 43 43 H 1.07996 * 120.07253 * 0.02562 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 1.4001 5 1 3.5472 1.4401 -0.7000 6 1 1.4471 2.6527 -0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5046 -0.1056 11 6 1.4352 -4.7353 -0.2222 12 6 2.1825 -5.8916 -0.3355 13 6 3.5630 -5.8298 -0.3218 14 6 4.2037 -4.6027 -0.2002 15 7 5.5990 -4.5407 -0.1869 16 6 6.3879 -5.7699 -0.3007 17 1 5.8364 -6.6031 -0.7363 18 6 7.2193 -6.1328 0.9773 19 6 8.0004 -6.9149 -0.0338 20 1 7.4620 -7.7713 -0.4401 21 6 9.5017 -7.0101 -0.2244 22 6 9.6326 -6.8083 -1.7681 23 1 9.6294 -7.7716 -2.2782 24 6 10.8927 -6.0481 -2.0927 25 8 10.8259 -4.9758 -2.6454 26 8 12.0893 -6.5623 -1.7678 27 6 8.3697 -5.9792 -2.1720 28 6 7.7641 -5.5778 -0.8521 29 1 8.2954 -4.7430 -0.3950 30 6 3.4555 -3.4387 -0.0919 31 1 -0.4850 0.8401 -0.0004 32 1 0.3566 -4.7874 -0.2288 33 1 1.6868 -6.8464 -0.4305 34 1 4.1445 -6.7360 -0.4061 35 1 6.0456 -3.6838 -0.1024 36 1 7.7600 -5.2958 1.4191 37 1 6.6858 -6.7413 1.7076 38 1 10.0158 -6.2170 0.3186 39 1 9.8726 -7.9902 0.0753 40 1 12.8691 -6.0382 -1.9966 41 1 7.6693 -6.5878 -2.7440 42 1 8.6634 -5.0971 -2.7411 43 1 3.9509 -2.4838 0.0035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:37 Heat of formation + Delta-G solvation = -20.332110 kcal Electronic energy + Delta-G solvation = -25641.993897 eV Core-core repulsion = 21848.359416 eV Total energy + Delta-G solvation = -3793.634481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90614 -40.25548 -38.89058 -36.82753 -36.50304 -34.77573 -32.83727 -32.09685 -29.31423 -28.85219 -27.91040 -26.11127 -25.22366 -23.33173 -22.34163 -21.75227 -20.87901 -20.39394 -19.65170 -18.44423 -17.79314 -17.33244 -16.96430 -16.20543 -15.89711 -15.16095 -15.01698 -14.77644 -14.50160 -14.18223 -14.02239 -13.75978 -13.63250 -13.28838 -12.88536 -12.81053 -12.54049 -12.28483 -12.11813 -11.88455 -11.64487 -11.60852 -11.58826 -11.38124 -11.14875 -10.90406 -10.87131 -10.77101 -10.71062 -10.50099 -10.34878 -9.55950 -9.35313 -9.24045 -8.72677 -7.32532 -6.73260 -6.38269 -3.97328 1.81781 2.41174 2.58073 2.63783 3.16413 3.17473 3.21891 3.30260 3.83231 4.02367 4.28552 4.34966 4.40490 4.54756 4.60224 4.74151 4.80035 5.06496 5.14277 5.19272 5.25078 5.32560 5.38871 5.43865 5.54820 5.61466 5.66364 5.73514 5.77489 5.91884 5.99079 6.01993 6.12862 6.16667 6.31274 6.40296 6.67771 6.69059 7.06387 7.18778 7.41749 7.51090 7.52324 7.70723 8.05021 8.08218 8.23906 9.08051 9.80755 10.80139 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.002741 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.735535 B =10213.090124 C =11513.505018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.278 1.278 7 C -0.388 4.388 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.189 3.811 11 C -0.237 4.237 12 C -0.040 4.040 13 C -0.281 4.281 14 C 0.249 3.751 15 N -0.741 5.741 16 C 0.167 3.833 17 H 0.120 0.880 18 C -0.130 4.130 19 C -0.156 4.156 20 H 0.105 0.895 21 C -0.083 4.083 22 C -0.088 4.088 23 H 0.114 0.886 24 C 0.484 3.516 25 O -0.511 6.511 26 O -0.517 6.517 27 C -0.099 4.099 28 C -0.153 4.153 29 H 0.094 0.906 30 C -0.302 4.302 31 H 0.269 0.731 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.409 0.591 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.933 -15.495 -1.383 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.203 1.203 7 C -0.465 4.465 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.135 3.865 11 C -0.257 4.257 12 C -0.059 4.059 13 C -0.303 4.303 14 C 0.148 3.852 15 N -0.369 5.369 16 C 0.060 3.940 17 H 0.138 0.862 18 C -0.170 4.170 19 C -0.175 4.175 20 H 0.123 0.877 21 C -0.121 4.121 22 C -0.107 4.107 23 H 0.132 0.868 24 C 0.326 3.674 25 O -0.399 6.399 26 O -0.328 6.328 27 C -0.136 4.136 28 C -0.173 4.173 29 H 0.112 0.888 30 C -0.325 4.325 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.268 0.732 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 20.172 -15.367 -1.456 25.400 hybrid contribution 1.422 1.540 -0.205 2.106 sum 21.594 -13.827 -1.661 25.695 Atomic orbital electron populations 1.70042 1.05906 1.27489 1.46585 1.25264 0.95810 0.98742 0.96748 0.85744 0.78926 0.80311 0.78615 1.19975 1.19294 1.20309 1.21296 0.91729 0.80889 1.52553 0.89197 1.83985 1.34257 1.11481 1.78440 1.19082 0.89529 0.87835 0.90082 1.20039 0.99343 0.90360 1.15976 1.20372 0.93017 0.96496 0.96033 1.20067 0.94378 0.95020 1.20876 1.17494 0.82428 0.93524 0.91773 1.44612 1.02794 1.07516 1.82024 1.22323 0.87800 0.89233 0.94649 0.86233 1.23278 0.97856 0.99435 0.96389 1.23207 0.95226 0.97350 1.01732 0.87654 1.21685 0.95851 1.02782 0.91797 1.22704 0.89262 0.99777 0.98952 0.86803 1.23441 0.85188 0.84425 0.74340 1.90732 1.87408 1.22428 1.39286 1.84544 1.17103 1.54018 1.77182 1.21663 0.93879 1.00475 0.97585 1.23792 0.98652 0.98659 0.96190 0.88772 1.20520 0.93744 0.97228 1.21047 0.92141 0.86958 0.87243 0.87868 0.77045 0.89296 0.91030 0.90911 0.90343 0.73229 0.90061 0.89489 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.39 -11.07 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.21 9.76 0.04 0.00 -5.21 16 10 C 0.19 4.71 6.64 -39.13 -0.26 4.45 16 11 C -0.24 -5.17 9.99 -39.35 -0.39 -5.56 16 12 C -0.04 -0.73 10.03 -39.63 -0.40 -1.13 16 13 C -0.28 -4.88 9.28 -39.33 -0.36 -5.25 16 14 C 0.25 4.60 6.65 -83.81 -0.56 4.04 16 15 N -0.74 -10.77 5.60 -65.17 -0.36 -11.14 16 16 C 0.17 1.84 4.02 -80.73 -0.32 1.51 16 17 H 0.12 1.29 5.54 -51.92 -0.29 1.00 16 18 C -0.13 -1.21 7.93 -40.85 -0.32 -1.53 16 19 C -0.16 -1.18 4.22 -102.92 -0.43 -1.61 16 20 H 0.11 0.71 7.60 -51.93 -0.39 0.31 16 21 C -0.08 -0.55 6.13 -25.69 -0.16 -0.71 16 22 C -0.09 -0.63 3.50 -88.23 -0.31 -0.94 16 23 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 24 C 0.48 4.23 7.58 36.00 0.27 4.50 16 25 O -0.51 -6.29 16.09 -18.75 -0.30 -6.59 16 26 O -0.52 -3.26 13.40 -39.26 -0.53 -3.78 16 27 C -0.10 -0.88 6.24 -26.09 -0.16 -1.04 16 28 C -0.15 -1.45 3.90 -105.01 -0.41 -1.86 16 29 H 0.09 0.96 7.42 -51.93 -0.39 0.57 16 30 C -0.30 -6.70 9.01 -39.20 -0.35 -7.05 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.11 2.39 8.06 -52.49 -0.42 1.96 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.10 1.49 6.00 -52.49 -0.31 1.17 16 35 H 0.40 5.53 8.77 -40.82 -0.36 5.17 16 36 H 0.09 0.83 7.54 -51.93 -0.39 0.44 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.53 7.95 -51.93 -0.41 0.11 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.41 1.02 9.10 45.56 0.41 1.43 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.96 6.59 -51.92 -0.34 0.62 16 43 H 0.12 2.77 5.64 -52.49 -0.30 2.48 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -33.99 353.84 -8.82 -42.81 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.71 Total: 9.69 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.98 Total: -21.98 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.39 Total: -36.19 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.83 Total: -15.59 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.99 -8.82 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.478 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds