Wall clock time and date at job start Tue Mar 31 2020 11:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47190 * 83.28906 * 3 2 1 5 5 H 1.48503 * 109.46941 * 203.29284 * 3 2 1 6 6 H 1.48497 * 109.46613 * 323.28645 * 3 2 1 7 7 C 1.39945 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99832 * 23.78495 * 7 2 1 9 9 C 1.41431 * 120.00084 * 203.77922 * 7 2 1 10 10 C 1.40790 * 120.17789 * 26.32049 * 9 7 2 11 11 C 1.37712 * 120.03845 * 179.69672 * 10 9 7 12 12 C 1.38366 * 120.41148 * 0.59976 * 11 10 9 13 13 C 1.39886 * 120.36271 * 359.67903 * 12 11 10 14 14 C 1.47877 * 120.02843 * 180.02562 * 13 12 11 15 15 O 1.21547 * 120.00199 * 180.02562 * 14 13 12 16 16 N 1.34779 * 120.00082 * 0.02562 * 14 13 12 17 17 C 1.46500 * 120.00081 * 180.02562 * 16 14 13 18 18 H 1.09004 * 110.43536 * 34.29737 * 17 16 14 19 19 C 1.54265 * 110.48880 * 271.75616 * 17 16 14 20 20 C 1.53871 * 106.60092 * 217.71432 * 19 17 16 21 21 C 1.54264 * 106.59624 * 359.97438 * 20 19 17 22 22 C 1.54892 * 110.48757 * 156.84010 * 17 16 14 23 23 H 1.09000 * 110.75578 * 38.30045 * 22 17 16 24 24 C 1.53009 * 110.75425 * 274.93835 * 22 17 16 25 25 C 1.50699 * 109.46700 * 175.00072 * 24 22 17 26 26 O 1.20818 * 120.00456 * 359.97438 * 25 24 22 27 27 O 1.34237 * 119.99482 * 179.97438 * 25 24 22 28 28 C 1.39029 * 119.94585 * 0.02562 * 13 12 11 29 29 H 0.96997 * 119.99813 * 173.15605 * 1 2 3 30 30 H 1.07999 * 119.97926 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.79326 * 180.29898 * 11 10 9 32 32 H 1.08000 * 119.82049 * 179.69549 * 12 11 10 33 33 H 0.97001 * 120.00050 * 0.02562 * 16 14 13 34 34 H 1.09001 * 110.03060 * 337.00078 * 19 17 16 35 35 H 1.08996 * 110.03302 * 98.42255 * 19 17 16 36 36 H 1.08996 * 110.03084 * 119.28652 * 20 19 17 37 37 H 1.09004 * 110.02889 * 240.71258 * 20 19 17 38 38 H 1.09005 * 110.48478 * 142.29526 * 21 20 19 39 39 H 1.08996 * 110.48805 * 264.79626 * 21 20 19 40 40 H 1.09003 * 109.46862 * 294.99835 * 24 22 17 41 41 H 1.08998 * 109.47034 * 54.99700 * 24 22 17 42 42 H 0.96699 * 116.99502 * 180.02562 * 27 25 24 43 43 H 1.08003 * 120.20620 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3482 2.1282 1.3905 5 1 3.6036 1.4033 -0.5536 6 1 1.5179 2.6075 -0.8370 7 6 2.0080 -1.2120 0.0005 8 1 1.5368 -2.1077 -0.3763 9 6 3.3323 -1.2638 0.4944 10 6 3.7664 -0.3305 1.4549 11 6 5.0546 -0.3874 1.9385 12 6 5.9339 -1.3511 1.4772 13 6 5.5223 -2.2832 0.5188 14 6 6.4680 -3.3103 0.0315 15 8 6.1100 -4.1197 -0.8016 16 7 7.7270 -3.3489 0.5110 17 6 8.6641 -4.3660 0.0278 18 1 8.4794 -4.5846 -1.0240 19 6 8.5502 -5.6507 0.8742 20 6 9.9778 -6.2039 1.0278 21 6 10.9093 -5.2365 0.2688 22 6 10.1261 -3.8988 0.2359 23 1 10.2308 -3.3672 1.1817 24 6 10.5877 -3.0255 -0.9326 25 6 11.9655 -2.4876 -0.6439 26 8 12.5210 -2.7729 0.3903 27 8 12.5756 -1.6914 -1.5360 28 6 4.2233 -2.2432 0.0249 29 1 -0.4850 -0.8341 -0.1001 30 1 3.0875 0.4278 1.8160 31 1 5.3820 0.3275 2.6788 32 1 6.9435 -1.3839 1.8594 33 1 8.0126 -2.7032 1.1762 34 1 8.1330 -5.4168 1.8536 35 1 7.9202 -6.3794 0.3640 36 1 10.2534 -6.2385 2.0817 37 1 10.0406 -7.2012 0.5921 38 1 11.8508 -5.1146 0.8043 39 1 11.0914 -5.5975 -0.7434 40 1 10.6144 -3.6227 -1.8441 41 1 9.8933 -2.1954 -1.0624 42 1 13.4588 -1.3712 -1.3068 43 1 3.9012 -2.9606 -0.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:34 Heat of formation + Delta-G solvation = -156.174636 kcal Electronic energy + Delta-G solvation = -25890.178024 eV Core-core repulsion = 22090.652969 eV Total energy + Delta-G solvation = -3799.525055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55055 -40.97208 -39.48431 -38.59709 -37.01386 -35.73111 -34.80032 -32.82814 -32.27898 -31.74327 -28.69914 -27.45017 -26.67449 -24.64386 -22.77629 -22.34350 -21.96386 -21.29491 -20.93113 -19.94283 -19.03619 -18.27043 -17.89230 -17.17451 -16.91646 -16.85433 -16.22583 -15.99916 -15.81912 -15.63588 -15.45188 -14.79921 -14.62324 -14.41311 -14.31079 -14.08087 -13.83335 -13.38449 -13.24408 -13.04259 -12.93971 -12.65916 -12.48348 -12.33574 -12.15653 -12.08070 -11.82407 -11.78152 -11.70134 -11.49162 -11.39264 -11.32596 -11.04151 -10.81501 -10.14115 -9.77917 -9.58340 -9.29269 -6.62276 0.18848 0.78148 1.26251 1.36436 1.56750 1.75376 1.98519 2.10573 2.18571 2.23641 2.66130 3.42345 3.48267 3.55384 3.78003 3.92386 4.16393 4.21704 4.27315 4.37443 4.43167 4.43499 4.49352 4.60325 4.63882 4.68347 4.72133 4.85282 4.91448 4.95992 5.07718 5.15149 5.18773 5.24597 5.26475 5.43684 5.44736 5.56321 5.65828 5.68252 5.71824 5.78331 5.99211 6.35536 6.52239 6.58713 6.78016 7.04951 7.24884 7.93284 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002980 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.504038 B = 9393.778663 C =10254.155456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.012 3.988 3 Si 1.104 2.896 4 H -0.248 1.248 5 H -0.260 1.260 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.039 0.961 9 C 0.069 3.931 10 C -0.229 4.229 11 C -0.079 4.079 12 C -0.186 4.186 13 C -0.111 4.111 14 C 0.565 3.435 15 O -0.584 6.584 16 N -0.704 5.704 17 C 0.145 3.855 18 H 0.085 0.915 19 C -0.136 4.136 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.077 4.077 23 H 0.095 0.905 24 C -0.111 4.111 25 C 0.488 3.512 26 O -0.542 6.542 27 O -0.518 6.518 28 C -0.177 4.177 29 H 0.277 0.723 30 H 0.109 0.891 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.427 0.573 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.711 -3.023 1.833 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.202 4.202 3 Si 0.923 3.077 4 H -0.172 1.172 5 H -0.184 1.184 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.057 0.943 9 C 0.066 3.934 10 C -0.249 4.249 11 C -0.097 4.097 12 C -0.206 4.206 13 C -0.114 4.114 14 C 0.354 3.646 15 O -0.465 6.465 16 N -0.356 5.356 17 C 0.040 3.960 18 H 0.103 0.897 19 C -0.175 4.175 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.096 4.096 23 H 0.113 0.887 24 C -0.149 4.149 25 C 0.331 3.669 26 O -0.432 6.432 27 O -0.332 6.332 28 C -0.197 4.197 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.252 0.748 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.288 0.712 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 24.927 -2.250 1.496 25.073 hybrid contribution -0.359 -1.795 0.000 1.831 sum 24.568 -4.045 1.496 24.944 Atomic orbital electron populations 1.70603 1.08693 1.32890 1.33880 1.28481 0.95649 1.06972 0.89114 0.83253 0.75077 0.69923 0.79453 1.17244 1.18385 1.20570 1.20596 0.99555 0.97087 1.41404 0.94251 1.17815 0.92183 0.92192 0.91180 1.21409 0.98391 1.03382 1.01683 1.21064 0.92268 0.97879 0.98487 1.21002 1.00672 0.97786 1.01097 1.19728 0.93689 0.97693 1.00314 1.18551 0.82611 0.83213 0.80206 1.90686 1.78239 1.42635 1.34950 1.45824 1.10391 1.34812 1.44587 1.21928 0.87401 0.87588 0.99067 0.89713 1.22520 0.98358 0.96584 1.00062 1.22039 0.92629 0.99252 1.01310 1.22399 0.98302 0.92797 1.01524 1.22159 0.92131 0.96795 0.98529 0.88687 1.21464 0.90098 1.01786 1.01511 1.23526 0.88546 0.74530 0.80250 1.90711 1.67118 1.57687 1.27708 1.84526 1.37759 1.61523 1.49364 1.21174 0.93463 1.02428 1.02664 0.91223 0.87334 0.83336 0.83361 0.74819 0.91626 0.92634 0.90893 0.90733 0.90543 0.90446 0.85842 0.86890 0.71158 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.74 13.65 21.83 0.30 -46.45 16 2 C 0.01 0.63 5.34 85.26 0.45 1.08 16 3 Si 1.10 47.21 24.99 68.60 1.71 48.93 16 4 H -0.25 -9.41 6.68 99.48 0.66 -8.74 16 5 H -0.26 -10.88 7.01 99.48 0.70 -10.18 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.56 -31.86 9.40 23.47 0.22 -31.64 16 8 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 9 C 0.07 3.55 5.14 -21.32 -0.11 3.45 16 10 C -0.23 -10.17 7.35 22.77 0.17 -10.01 16 11 C -0.08 -2.79 10.01 22.18 0.22 -2.57 16 12 C -0.19 -6.14 9.55 22.70 0.22 -5.93 16 13 C -0.11 -4.49 5.87 -20.14 -0.12 -4.61 16 14 C 0.56 20.54 7.77 86.80 0.67 21.22 16 15 O -0.58 -25.72 16.01 -3.86 -0.06 -25.78 16 16 N -0.70 -17.42 5.05 -440.28 -2.22 -19.65 16 17 C 0.14 3.02 2.63 46.07 0.12 3.14 16 18 H 0.08 2.03 7.51 -2.38 -0.02 2.02 16 19 C -0.14 -2.79 6.54 31.32 0.20 -2.59 16 20 C -0.11 -1.71 6.80 31.32 0.21 -1.50 16 21 C -0.11 -1.58 5.76 31.72 0.18 -1.40 16 22 C -0.08 -1.18 2.05 -9.45 -0.02 -1.20 16 23 H 0.09 1.48 7.77 -2.39 -0.02 1.46 16 24 C -0.11 -1.49 5.32 29.85 0.16 -1.33 16 25 C 0.49 7.27 8.16 71.24 0.58 7.85 16 26 O -0.54 -10.91 15.62 21.99 0.34 -10.56 16 27 O -0.52 -5.84 13.42 -51.48 -0.69 -6.53 16 28 C -0.18 -8.80 9.34 23.01 0.21 -8.58 16 29 H 0.28 15.48 8.73 -92.71 -0.81 14.67 16 30 H 0.11 4.72 4.69 -2.91 -0.01 4.71 16 31 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.15 3.37 6.38 -2.91 -0.02 3.35 16 33 H 0.41 7.96 6.56 -92.71 -0.61 7.36 16 34 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.08 1.17 7.40 -2.38 -0.02 1.15 16 39 H 0.08 0.94 7.94 -2.39 -0.02 0.92 16 40 H 0.12 1.33 7.99 -2.39 -0.02 1.31 16 41 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.43 1.36 9.10 -74.06 -0.67 0.68 16 43 H 0.08 4.49 7.64 -2.91 -0.02 4.47 16 Total: -1.00 -72.20 355.02 2.45 -69.75 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.31 Total: 24.90 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 3.39 Total: -34.60 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -1.93 Total: -66.10 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.41 Total: -42.88 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.71 Total: 48.93 kcal Total: -72.20 2.45 -69.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.425 kcal (2) G-P(sol) polarization free energy of solvation -72.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds