Wall clock time and date at job start Tue Mar 31 2020 11:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34984 * 119.99767 * 2 1 4 4 C 1.46225 * 120.00075 * 5.41610 * 3 2 1 5 5 O 1.21758 * 120.00129 * 5.76383 * 4 3 2 6 6 N 1.34776 * 119.99700 * 185.76993 * 4 3 2 7 7 C 1.36704 * 120.00414 * 4.18749 * 6 4 3 8 8 H 1.08006 * 119.99706 * 319.51240 * 7 6 4 9 9 C 1.39128 * 120.00248 * 139.51102 * 7 6 4 10 10 N 1.31320 * 119.99944 * 166.57109 * 9 7 6 11 11 Si 1.86797 * 119.99840 * 346.56547 * 9 7 6 12 12 H 1.48500 * 109.46998 * 92.13725 * 11 9 7 13 13 H 1.48496 * 109.46950 * 212.13276 * 11 9 7 14 14 H 1.48498 * 109.47021 * 332.13300 * 11 9 7 15 15 C 1.46509 * 119.99704 * 184.18517 * 6 4 3 16 16 C 1.52997 * 109.46905 * 90.00040 * 15 6 4 17 17 C 1.50693 * 109.47220 * 180.02562 * 16 15 6 18 18 O 1.20827 * 119.99734 * 359.97438 * 17 16 15 19 19 O 1.34232 * 120.00538 * 180.02562 * 17 16 15 20 20 C 1.47144 * 120.00225 * 179.97438 * 2 1 3 21 21 C 1.39893 * 120.17754 * 258.41031 * 20 2 1 22 22 C 1.37853 * 119.82580 * 179.72418 * 21 20 2 23 23 C 1.38436 * 120.17060 * 0.26950 * 22 21 20 24 24 C 1.38393 * 120.35629 * 359.97438 * 23 22 21 25 25 C 1.37895 * 120.17052 * 359.97438 * 24 23 22 26 26 C 1.50705 * 120.08601 * 180.02562 * 25 24 23 27 27 H 1.08996 * 109.47221 * 275.46802 * 1 2 3 28 28 H 1.09004 * 109.47053 * 35.47220 * 1 2 3 29 29 H 1.09002 * 109.47114 * 155.47248 * 1 2 3 30 30 H 1.07998 * 119.99751 * 185.41514 * 3 2 1 31 31 H 0.96997 * 120.00267 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.46881 * 209.99911 * 15 6 4 33 33 H 1.08995 * 109.46942 * 330.00342 * 15 6 4 34 34 H 1.09008 * 109.47229 * 299.99907 * 16 15 6 35 35 H 1.09001 * 109.47157 * 59.99974 * 16 15 6 36 36 H 0.96698 * 117.00279 * 179.97438 * 19 17 16 37 37 H 1.08004 * 120.08707 * 359.97438 * 21 20 2 38 38 H 1.07994 * 119.91452 * 180.25604 * 22 21 20 39 39 H 1.08008 * 119.81947 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.90994 * 179.97438 * 24 23 22 41 41 H 1.08997 * 109.46923 * 90.00210 * 26 25 24 42 42 H 1.08992 * 109.46969 * 209.99981 * 26 25 24 43 43 H 1.08997 * 109.47259 * 330.00577 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1690 0.0000 4 6 1.4556 2.4325 0.1195 5 8 0.2554 2.4278 0.3242 6 7 2.1148 3.6023 0.0030 7 6 3.4451 3.6089 -0.3117 8 1 4.1084 2.8805 0.1311 9 6 3.9446 4.5537 -1.2024 10 7 5.2408 4.7368 -1.3069 11 14 2.7715 5.5618 -2.2498 12 1 2.4442 6.8283 -1.5470 13 1 3.4124 5.8704 -3.5533 14 1 1.5255 4.7879 -2.4817 15 6 1.4056 4.8669 0.2135 16 6 1.4909 5.2597 1.6898 17 6 0.7609 6.5601 1.9065 18 8 0.2276 7.1159 0.9756 19 8 0.7039 7.1015 3.1335 20 6 2.2428 -1.2743 0.0006 21 6 2.8048 -1.7612 1.1855 22 6 3.4877 -2.9587 1.1789 23 6 3.6229 -3.6761 0.0027 24 6 3.0742 -3.1987 -1.1747 25 6 2.3872 -2.0031 -1.1844 26 6 1.7899 -1.4853 -2.4675 27 1 -0.3633 0.0979 1.0229 28 1 -0.3633 0.8370 -0.5964 29 1 -0.3633 -0.9349 -0.4266 30 1 3.2582 1.1711 -0.0883 31 1 5.5891 5.3958 -1.9276 32 1 1.8628 5.6457 -0.3967 33 1 0.3602 4.7489 -0.0712 34 1 1.0337 4.4807 2.3000 35 1 2.5364 5.3776 1.9746 36 1 0.2248 7.9366 3.2231 37 1 2.7005 -1.2025 2.1038 38 1 3.9186 -3.3380 2.0936 39 1 4.1595 -4.6135 0.0039 40 1 3.1843 -3.7641 -2.0883 41 1 0.7721 -1.8608 -2.5719 42 1 1.7749 -0.3956 -2.4474 43 1 2.3908 -1.8249 -3.3110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602951291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:59 Heat of formation + Delta-G solvation = -79.706195 kcal Electronic energy + Delta-G solvation = -26371.336439 eV Core-core repulsion = 22575.127304 eV Total energy + Delta-G solvation = -3796.209135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06425 -39.49987 -38.78764 -36.07636 -35.52358 -34.18035 -32.46836 -32.28486 -31.03314 -29.78553 -27.32204 -26.80306 -25.12229 -24.51627 -22.92813 -21.43634 -20.90906 -19.71582 -18.54027 -17.91707 -16.76422 -16.49968 -16.29294 -15.97585 -15.62807 -15.23811 -15.12623 -14.52290 -14.20374 -13.98452 -13.66977 -13.36128 -13.09644 -12.99294 -12.97937 -12.58602 -12.53212 -12.30107 -12.11767 -11.97179 -11.84715 -11.67593 -11.34708 -11.25893 -11.10373 -10.97722 -10.87515 -10.73439 -10.34227 -10.12145 -9.86310 -9.25045 -8.75299 -8.60311 -8.54452 -8.33820 -7.85234 -6.53354 -4.20917 1.36903 1.51403 1.97610 2.47639 3.08286 3.21792 3.24442 3.28525 3.84120 4.06464 4.12230 4.39911 4.86842 4.97176 4.99115 5.04571 5.16404 5.32487 5.40239 5.46073 5.60890 5.66631 5.75309 5.76003 5.79522 5.96561 6.00494 6.04209 6.06159 6.20734 6.25434 6.28196 6.35675 6.47850 6.54283 6.58778 6.69072 6.70296 6.75747 6.99131 7.07303 7.20197 7.26813 7.97831 8.10856 8.15065 8.85344 9.22994 9.55401 10.56039 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003867 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.616365 B = 7238.629152 C = 8039.542125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.047 4.047 3 C -0.153 4.153 4 C 0.510 3.490 5 O -0.590 6.590 6 N -0.457 5.457 7 C -0.347 4.347 8 H 0.109 0.891 9 C 0.068 3.932 10 N -0.861 5.861 11 Si 0.878 3.122 12 H -0.269 1.269 13 H -0.288 1.288 14 H -0.261 1.261 15 C 0.111 3.889 16 C -0.123 4.123 17 C 0.484 3.516 18 O -0.520 6.520 19 O -0.520 6.520 20 C -0.041 4.041 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.071 4.071 26 C -0.118 4.118 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.132 0.868 31 H 0.277 0.723 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.404 0.596 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 -9.140 3.920 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.050 4.050 3 C -0.174 4.174 4 C 0.303 3.697 5 O -0.477 6.477 6 N -0.176 5.176 7 C -0.475 4.475 8 H 0.126 0.874 9 C -0.140 4.140 10 N -0.496 5.496 11 Si 0.706 3.294 12 H -0.196 1.196 13 H -0.215 1.215 14 H -0.185 1.185 15 C -0.013 4.013 16 C -0.162 4.162 17 C 0.327 3.673 18 O -0.408 6.408 19 O -0.331 6.331 20 C -0.041 4.041 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.071 4.071 26 C -0.174 4.174 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.262 0.738 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.377 -9.225 3.611 10.830 hybrid contribution -0.358 1.265 -0.467 1.395 sum -4.735 -7.960 3.143 9.781 Atomic orbital electron populations 1.20974 0.90510 1.01601 1.03001 1.20843 0.95758 0.90823 0.97545 1.22920 1.00875 0.91128 1.02438 1.18283 0.86144 0.84677 0.80603 1.90647 1.14565 1.87795 1.54653 1.43528 1.10034 1.02825 1.61223 1.19084 0.81673 1.20289 1.26413 0.87362 1.25400 0.95662 0.97015 0.95883 1.69626 1.11827 1.33023 1.35081 0.86938 0.81649 0.80840 0.79998 1.19563 1.21522 1.18482 1.21457 0.98956 0.88143 0.92720 1.21761 1.02286 0.91166 1.00942 1.23715 0.77241 0.86878 0.79505 1.90701 1.44270 1.62712 1.43093 1.84579 1.72305 1.42120 1.34126 1.18891 0.97846 0.94343 0.93048 1.21309 0.97223 0.95945 0.97431 1.21006 1.00013 0.95397 0.98094 1.21146 1.00178 0.99852 0.92883 1.20918 0.99099 0.95936 0.98141 1.20085 0.97817 0.94319 0.94848 1.20829 1.00302 1.02492 0.93792 0.91282 0.88821 0.93960 0.84974 0.91279 0.90849 0.89923 0.87503 0.86665 0.73846 0.85845 0.86208 0.86431 0.86238 0.91250 0.90650 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 8.52 36.01 0.31 -1.43 16 2 C -0.05 -0.81 3.94 -102.16 -0.40 -1.21 16 3 C -0.15 -3.03 8.98 -37.53 -0.34 -3.36 16 4 C 0.51 11.33 7.44 -13.05 -0.10 11.24 16 5 O -0.59 -13.54 12.82 5.14 0.07 -13.48 16 6 N -0.46 -10.56 2.17 -116.46 -0.25 -10.81 16 7 C -0.35 -8.66 8.99 -15.05 -0.14 -8.79 16 8 H 0.11 2.81 6.84 -52.48 -0.36 2.45 16 9 C 0.07 1.77 5.42 -17.44 -0.09 1.67 16 10 N -0.86 -23.20 13.95 55.51 0.77 -22.42 16 11 Si 0.88 20.86 24.72 -169.99 -4.20 16.66 16 12 H -0.27 -6.36 6.69 56.52 0.38 -5.98 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.26 -6.32 7.05 56.52 0.40 -5.92 16 15 C 0.11 2.43 3.42 -4.04 -0.01 2.41 16 16 C -0.12 -2.25 6.13 -27.89 -0.17 -2.42 16 17 C 0.48 8.33 8.33 36.00 0.30 8.63 16 18 O -0.52 -10.46 16.74 -18.75 -0.31 -10.77 16 19 O -0.52 -6.91 13.42 -39.26 -0.53 -7.44 16 20 C -0.04 -0.63 5.26 -105.06 -0.55 -1.19 16 21 C -0.10 -1.41 9.80 -39.10 -0.38 -1.80 16 22 C -0.13 -1.54 10.03 -39.65 -0.40 -1.93 16 23 C -0.12 -1.41 10.04 -39.45 -0.40 -1.81 16 24 C -0.12 -1.51 9.69 -39.65 -0.38 -1.89 16 25 C -0.07 -1.00 5.92 -104.14 -0.62 -1.61 16 26 C -0.12 -1.52 9.62 36.01 0.35 -1.18 16 27 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 28 H 0.09 1.76 6.02 -51.93 -0.31 1.44 16 29 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.13 2.69 6.47 -52.49 -0.34 2.35 16 31 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.07 1.72 2.85 -51.93 -0.15 1.57 16 33 H 0.08 1.87 7.32 -51.93 -0.38 1.49 16 34 H 0.11 1.84 8.14 -51.92 -0.42 1.42 16 35 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.40 3.41 9.10 45.56 0.41 3.83 16 37 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.12 7.10 -51.93 -0.37 0.76 16 43 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -30.28 361.13 -6.92 -37.20 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.87 Total: 10.29 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.03 Total: -4.67 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.52 Total: -33.23 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.78 Total: -31.69 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.20 Total: 16.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.28 -6.92 -37.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602951291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.507 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds