Wall clock time and date at job start Tue Mar 31 2020 11:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34984 * 119.99767 * 2 1 4 4 C 1.46225 * 120.00075 * 5.41610 * 3 2 1 5 5 O 1.21758 * 120.00129 * 5.76383 * 4 3 2 6 6 N 1.34776 * 119.99700 * 185.76993 * 4 3 2 7 7 C 1.36704 * 120.00414 * 4.18749 * 6 4 3 8 8 H 1.08006 * 119.99706 * 319.51240 * 7 6 4 9 9 C 1.39128 * 120.00248 * 139.51102 * 7 6 4 10 10 N 1.31320 * 119.99944 * 166.57109 * 9 7 6 11 11 Si 1.86797 * 119.99840 * 346.56547 * 9 7 6 12 12 H 1.48500 * 109.46998 * 92.13725 * 11 9 7 13 13 H 1.48496 * 109.46950 * 212.13276 * 11 9 7 14 14 H 1.48498 * 109.47021 * 332.13300 * 11 9 7 15 15 C 1.46509 * 119.99704 * 184.18517 * 6 4 3 16 16 C 1.52997 * 109.46905 * 90.00040 * 15 6 4 17 17 C 1.50693 * 109.47220 * 180.02562 * 16 15 6 18 18 O 1.20827 * 119.99734 * 359.97438 * 17 16 15 19 19 O 1.34232 * 120.00538 * 180.02562 * 17 16 15 20 20 C 1.47144 * 120.00225 * 179.97438 * 2 1 3 21 21 C 1.39893 * 120.17754 * 258.41031 * 20 2 1 22 22 C 1.37853 * 119.82580 * 179.72418 * 21 20 2 23 23 C 1.38436 * 120.17060 * 0.26950 * 22 21 20 24 24 C 1.38393 * 120.35629 * 359.97438 * 23 22 21 25 25 C 1.37895 * 120.17052 * 359.97438 * 24 23 22 26 26 C 1.50705 * 120.08601 * 180.02562 * 25 24 23 27 27 H 1.08996 * 109.47221 * 275.46802 * 1 2 3 28 28 H 1.09004 * 109.47053 * 35.47220 * 1 2 3 29 29 H 1.09002 * 109.47114 * 155.47248 * 1 2 3 30 30 H 1.07998 * 119.99751 * 185.41514 * 3 2 1 31 31 H 0.96997 * 120.00267 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.46881 * 209.99911 * 15 6 4 33 33 H 1.08995 * 109.46942 * 330.00342 * 15 6 4 34 34 H 1.09008 * 109.47229 * 299.99907 * 16 15 6 35 35 H 1.09001 * 109.47157 * 59.99974 * 16 15 6 36 36 H 0.96698 * 117.00279 * 179.97438 * 19 17 16 37 37 H 1.08004 * 120.08707 * 359.97438 * 21 20 2 38 38 H 1.07994 * 119.91452 * 180.25604 * 22 21 20 39 39 H 1.08008 * 119.81947 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.90994 * 179.97438 * 24 23 22 41 41 H 1.08997 * 109.46923 * 90.00210 * 26 25 24 42 42 H 1.08992 * 109.46969 * 209.99981 * 26 25 24 43 43 H 1.08997 * 109.47259 * 330.00577 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1690 0.0000 4 6 1.4556 2.4325 0.1195 5 8 0.2554 2.4278 0.3242 6 7 2.1148 3.6023 0.0030 7 6 3.4451 3.6089 -0.3117 8 1 4.1084 2.8805 0.1311 9 6 3.9446 4.5537 -1.2024 10 7 5.2408 4.7368 -1.3069 11 14 2.7715 5.5618 -2.2498 12 1 2.4442 6.8283 -1.5470 13 1 3.4124 5.8704 -3.5533 14 1 1.5255 4.7879 -2.4817 15 6 1.4056 4.8669 0.2135 16 6 1.4909 5.2597 1.6898 17 6 0.7609 6.5601 1.9065 18 8 0.2276 7.1159 0.9756 19 8 0.7039 7.1015 3.1335 20 6 2.2428 -1.2743 0.0006 21 6 2.8048 -1.7612 1.1855 22 6 3.4877 -2.9587 1.1789 23 6 3.6229 -3.6761 0.0027 24 6 3.0742 -3.1987 -1.1747 25 6 2.3872 -2.0031 -1.1844 26 6 1.7899 -1.4853 -2.4675 27 1 -0.3633 0.0979 1.0229 28 1 -0.3633 0.8370 -0.5964 29 1 -0.3633 -0.9349 -0.4266 30 1 3.2582 1.1711 -0.0883 31 1 5.5891 5.3958 -1.9276 32 1 1.8628 5.6457 -0.3967 33 1 0.3602 4.7489 -0.0712 34 1 1.0337 4.4807 2.3000 35 1 2.5364 5.3776 1.9746 36 1 0.2248 7.9366 3.2231 37 1 2.7005 -1.2025 2.1038 38 1 3.9186 -3.3380 2.0936 39 1 4.1595 -4.6135 0.0039 40 1 3.1843 -3.7641 -2.0883 41 1 0.7721 -1.8608 -2.5719 42 1 1.7749 -0.3956 -2.4474 43 1 2.3908 -1.8249 -3.3110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602951291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:59 Heat of formation + Delta-G solvation = -96.814831 kcal Electronic energy + Delta-G solvation = -26372.078325 eV Core-core repulsion = 22575.127304 eV Total energy + Delta-G solvation = -3796.951021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50500 -40.87777 -40.13888 -37.52323 -37.05362 -35.61612 -34.22046 -33.46725 -32.68026 -30.92274 -28.82347 -27.83497 -26.98966 -26.09929 -24.11098 -22.56878 -22.22178 -21.28636 -20.15525 -19.25283 -18.35561 -18.15457 -17.92799 -17.25110 -16.97970 -16.56721 -16.33178 -15.89334 -15.79828 -15.61947 -14.93936 -14.88244 -14.61633 -14.40077 -14.15437 -14.05161 -13.98162 -13.68546 -13.53379 -13.39641 -13.09520 -13.07548 -12.83905 -12.75470 -12.62780 -12.45192 -11.98885 -11.96701 -11.92269 -11.79940 -11.68967 -11.13399 -10.37604 -10.10239 -9.73015 -9.64219 -9.42674 -8.53681 -6.20637 0.23500 0.52291 0.54955 1.10311 1.17239 1.27357 1.35234 1.91244 2.11255 2.36146 2.73316 2.88350 2.95240 3.72741 3.78303 3.83122 3.99846 4.02736 4.19003 4.27054 4.29331 4.43911 4.47671 4.53418 4.63249 4.64773 4.66104 4.80685 4.82250 4.84429 4.89311 4.98552 5.12917 5.17205 5.32820 5.41458 5.48686 5.51501 5.52832 5.62416 5.69945 5.76935 6.04458 6.14225 6.19384 6.90545 6.92971 7.35546 7.71169 8.59520 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003867 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.616365 B = 7238.629152 C = 8039.542125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.004 4.004 3 C -0.192 4.192 4 C 0.512 3.488 5 O -0.600 6.600 6 N -0.470 5.470 7 C -0.333 4.333 8 H 0.092 0.908 9 C 0.037 3.963 10 N -0.895 5.895 11 Si 0.920 3.080 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.109 3.891 16 C -0.118 4.118 17 C 0.496 3.504 18 O -0.552 6.552 19 O -0.504 6.504 20 C -0.075 4.075 21 C -0.113 4.113 22 C -0.128 4.128 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.083 4.083 26 C -0.117 4.117 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.280 0.720 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.429 0.571 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 -11.213 4.555 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.006 4.006 3 C -0.212 4.212 4 C 0.306 3.694 5 O -0.488 6.488 6 N -0.190 5.190 7 C -0.461 4.461 8 H 0.110 0.890 9 C -0.168 4.168 10 N -0.532 5.532 11 Si 0.748 3.252 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.014 4.014 16 C -0.157 4.157 17 C 0.340 3.660 18 O -0.443 6.443 19 O -0.317 6.317 20 C -0.075 4.075 21 C -0.131 4.131 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.083 4.083 26 C -0.174 4.174 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.291 0.709 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.657 -11.281 4.276 12.932 hybrid contribution -0.351 1.705 -0.566 1.831 sum -5.009 -9.576 3.710 11.426 Atomic orbital electron populations 1.20946 0.90084 1.02022 1.02836 1.21096 0.96128 0.91104 0.92321 1.22652 1.00223 0.91058 1.07286 1.18653 0.86135 0.85157 0.79423 1.90632 1.14989 1.88103 1.55028 1.43565 1.09501 1.03571 1.62398 1.18927 0.82229 1.19319 1.25596 0.89002 1.25769 0.96322 0.98017 0.96670 1.69671 1.12726 1.34384 1.36395 0.86270 0.79833 0.79849 0.79233 1.19413 1.21002 1.19813 1.21380 0.97768 0.87241 0.94998 1.21580 1.02993 0.92522 0.98561 1.23288 0.76390 0.86272 0.80067 1.90700 1.45737 1.63514 1.44390 1.84500 1.72196 1.43517 1.31516 1.18919 0.99926 0.94065 0.94620 1.21430 0.97723 0.97044 0.96952 1.21344 0.99114 0.94469 0.99656 1.21591 0.98989 1.00654 0.92136 1.21255 0.98121 0.95242 0.99683 1.20258 0.98486 0.95139 0.94447 1.20838 1.01567 1.00665 0.94285 0.90999 0.90989 0.91356 0.86218 0.90978 0.92304 0.91020 0.86423 0.86257 0.70915 0.85882 0.83573 0.83143 0.83644 0.89904 0.93411 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.37 8.52 71.24 0.61 -2.76 16 2 C 0.00 -0.14 3.94 -18.27 -0.07 -0.21 16 3 C -0.19 -7.85 8.98 23.60 0.21 -7.63 16 4 C 0.51 23.44 7.44 86.32 0.64 24.08 16 5 O -0.60 -28.10 12.82 -4.53 -0.06 -28.16 16 6 N -0.47 -22.35 2.17 -640.58 -1.39 -23.74 16 7 C -0.33 -17.14 8.99 84.15 0.76 -16.38 16 8 H 0.09 4.98 6.84 -2.91 -0.02 4.96 16 9 C 0.04 1.95 5.42 84.98 0.46 2.41 16 10 N -0.89 -49.26 13.95 21.69 0.30 -48.96 16 11 Si 0.92 44.03 24.72 68.60 1.70 45.73 16 12 H -0.27 -12.62 6.69 99.48 0.67 -11.96 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.27 -13.47 7.05 99.48 0.70 -12.77 16 15 C 0.11 4.89 3.42 86.38 0.30 5.18 16 16 C -0.12 -4.30 6.13 29.84 0.18 -4.11 16 17 C 0.50 16.59 8.33 71.23 0.59 17.18 16 18 O -0.55 -21.98 16.74 21.96 0.37 -21.61 16 19 O -0.50 -12.24 13.42 -51.44 -0.69 -12.93 16 20 C -0.08 -2.26 5.26 -20.15 -0.11 -2.37 16 21 C -0.11 -3.03 9.80 22.58 0.22 -2.81 16 22 C -0.13 -2.72 10.03 22.23 0.22 -2.50 16 23 C -0.12 -2.23 10.04 22.35 0.22 -2.01 16 24 C -0.13 -2.67 9.69 22.23 0.22 -2.46 16 25 C -0.08 -2.21 5.92 -19.55 -0.12 -2.33 16 26 C -0.12 -2.89 9.62 71.24 0.69 -2.21 16 27 H 0.07 2.35 8.10 -2.39 -0.02 2.33 16 28 H 0.07 2.73 6.02 -2.38 -0.01 2.71 16 29 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 30 H 0.12 5.16 6.47 -2.91 -0.02 5.15 16 31 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.06 2.80 2.85 -2.39 -0.01 2.79 16 33 H 0.07 3.32 7.32 -2.39 -0.02 3.30 16 34 H 0.12 4.01 8.14 -2.38 -0.02 3.99 16 35 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 36 H 0.43 6.06 9.10 -74.06 -0.67 5.38 16 37 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 38 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.43 7.10 -2.39 -0.02 1.42 16 43 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -66.48 361.13 5.58 -60.90 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.32 Total: 27.70 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.03 Total: 1.08 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -1.08 Total: -72.70 kcal Atomic # 8 Polarization: -62.33 SS G_CDS: -0.38 Total: -62.71 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.70 Total: 45.73 kcal Total: -66.48 5.58 -60.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602951291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.915 kcal (2) G-P(sol) polarization free energy of solvation -66.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds