Wall clock time and date at job start Tue Mar 31 2020 11:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34978 * 120.00363 * 2 1 4 4 C 1.46226 * 120.00456 * 179.97438 * 3 2 1 5 5 O 1.21763 * 119.99751 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00291 * 180.02562 * 4 3 2 7 7 C 1.36711 * 119.99763 * 0.02562 * 6 4 3 8 8 H 1.07999 * 120.00160 * 35.61307 * 7 6 4 9 9 C 1.39127 * 120.00130 * 215.33608 * 7 6 4 10 10 N 1.31324 * 119.99587 * 20.64291 * 9 7 6 11 11 Si 1.86792 * 120.00298 * 200.63750 * 9 7 6 12 12 H 1.48497 * 109.47377 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46835 * 120.00101 * 11 9 7 14 14 H 1.48498 * 109.47676 * 240.00173 * 11 9 7 15 15 C 1.46495 * 119.99980 * 180.02562 * 6 4 3 16 16 C 1.53003 * 109.47116 * 273.22231 * 15 6 4 17 17 C 1.50702 * 109.47214 * 180.02562 * 16 15 6 18 18 O 1.20820 * 120.00192 * 359.97438 * 17 16 15 19 19 O 1.34231 * 119.99723 * 180.02562 * 17 16 15 20 20 C 1.47149 * 120.00021 * 180.02562 * 2 1 3 21 21 C 1.39896 * 120.17060 * 254.72360 * 20 2 1 22 22 C 1.37855 * 119.82116 * 179.76803 * 21 20 2 23 23 C 1.38433 * 120.17686 * 0.50446 * 22 21 20 24 24 C 1.38393 * 120.34898 * 359.74997 * 23 22 21 25 25 C 1.37899 * 120.17620 * 359.97438 * 24 23 22 26 26 C 1.50697 * 120.09031 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46531 * 89.99869 * 1 2 3 28 28 H 1.08999 * 109.47026 * 209.99460 * 1 2 3 29 29 H 1.08997 * 109.46669 * 330.00061 * 1 2 3 30 30 H 1.07999 * 119.99560 * 0.02562 * 3 2 1 31 31 H 0.96999 * 119.99898 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.47830 * 33.22383 * 15 6 4 33 33 H 1.09001 * 109.47371 * 153.22632 * 15 6 4 34 34 H 1.09001 * 109.47019 * 300.00183 * 16 15 6 35 35 H 1.09001 * 109.46673 * 59.99974 * 16 15 6 36 36 H 0.96702 * 116.99549 * 179.97438 * 19 17 16 37 37 H 1.08008 * 120.09134 * 359.97438 * 21 20 2 38 38 H 1.08004 * 119.91657 * 180.25369 * 22 21 20 39 39 H 1.07999 * 119.82944 * 179.76442 * 23 22 21 40 40 H 1.08003 * 119.91382 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.47126 * 270.01760 * 26 25 24 42 42 H 1.08991 * 109.47310 * 30.02215 * 26 25 24 43 43 H 1.08998 * 109.47209 * 150.02741 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1820 1.1689 0.0000 4 6 3.6442 1.1689 0.0006 5 8 4.2530 0.1144 0.0006 6 7 4.3182 2.3361 0.0011 7 6 3.6346 3.5200 0.0016 8 1 2.7061 3.6073 0.5463 9 6 4.1380 4.6143 -0.6947 10 7 5.0115 4.4338 -1.6586 11 14 3.5712 6.3399 -0.2589 12 1 2.5913 6.2727 0.8548 13 1 4.7406 7.1540 0.1597 14 1 2.9317 6.9652 -1.4444 15 6 5.7831 2.3360 0.0011 16 6 6.2931 2.2543 1.4413 17 6 7.8001 2.2549 1.4414 18 8 8.4043 2.3141 0.3967 19 8 8.4712 2.1886 2.6020 20 6 2.2428 -1.2743 -0.0006 21 6 2.8703 -1.7244 1.1659 22 6 3.5536 -2.9217 1.1586 23 6 3.6286 -3.6730 -0.0017 24 6 3.0150 -3.2320 -1.1612 25 6 2.3229 -2.0393 -1.1687 26 6 1.6559 -1.5607 -2.4324 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3632 0.8900 0.5138 30 1 1.6420 2.1042 0.0004 31 1 5.3622 5.1966 -2.1444 32 1 6.1465 1.4766 -0.5623 33 1 6.1465 3.2537 -0.4614 34 1 5.9298 3.1137 2.0047 35 1 5.9297 1.3366 1.9038 36 1 9.4369 2.1914 2.5515 37 1 2.8167 -1.1371 2.0708 38 1 4.0351 -3.2726 2.0594 39 1 4.1686 -4.6082 -0.0022 40 1 3.0783 -3.8235 -2.0626 41 1 2.3547 -0.9485 -3.0026 42 1 1.3531 -2.4196 -3.0311 43 1 0.7777 -0.9676 -2.1776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602951292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:02 Heat of formation + Delta-G solvation = -84.369877 kcal Electronic energy + Delta-G solvation = -26978.036797 eV Core-core repulsion = 23181.625430 eV Total energy + Delta-G solvation = -3796.411367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.83452 -39.29863 -38.14722 -35.82048 -35.17890 -34.17883 -32.11507 -31.92516 -30.77279 -29.47260 -27.47964 -26.43657 -25.24183 -23.92738 -22.48382 -21.03534 -20.63039 -19.48134 -18.51829 -17.71443 -16.95732 -16.24123 -15.91456 -15.46584 -15.41632 -14.95250 -14.58903 -14.54330 -13.82829 -13.63119 -13.48496 -13.15177 -13.00356 -12.74623 -12.67130 -12.55237 -12.43072 -12.06442 -11.82698 -11.65774 -11.58864 -11.38884 -11.28206 -11.15069 -11.07667 -10.74728 -10.60700 -10.44693 -10.32462 -10.12994 -10.02855 -9.25442 -8.79001 -8.39969 -8.12277 -7.63606 -7.56786 -6.44270 -4.12418 1.78417 1.98670 2.19677 2.67923 3.06704 3.16958 3.19708 3.44871 4.02639 4.30998 4.37880 4.81623 4.97522 5.14771 5.31047 5.36343 5.51931 5.59325 5.63522 5.69633 5.79603 5.80566 5.81982 5.95982 6.02504 6.07130 6.14003 6.18374 6.29821 6.33335 6.35668 6.54037 6.67882 6.80123 6.84427 6.89416 6.99384 7.08529 7.18391 7.21277 7.27815 7.44311 7.59781 7.82388 8.27795 8.32570 9.00045 9.46343 9.89824 10.55731 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.005232 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.616601 B = 5350.891886 C = 7124.879216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.069 4.069 3 C -0.145 4.145 4 C 0.488 3.512 5 O -0.583 6.583 6 N -0.429 5.429 7 C -0.344 4.344 8 H 0.093 0.907 9 C 0.043 3.957 10 N -0.850 5.850 11 Si 0.912 3.088 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.125 3.875 16 C -0.123 4.123 17 C 0.483 3.517 18 O -0.514 6.514 19 O -0.525 6.525 20 C -0.001 4.001 21 C -0.069 4.069 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.077 4.077 26 C -0.113 4.113 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.272 0.728 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.401 0.599 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -6.986 4.961 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.071 4.071 3 C -0.166 4.166 4 C 0.279 3.721 5 O -0.470 6.470 6 N -0.146 5.146 7 C -0.472 4.472 8 H 0.111 0.889 9 C -0.165 4.165 10 N -0.485 5.485 11 Si 0.738 3.262 12 H -0.190 1.190 13 H -0.205 1.205 14 H -0.206 1.206 15 C 0.001 3.999 16 C -0.162 4.162 17 C 0.325 3.675 18 O -0.401 6.401 19 O -0.337 6.337 20 C -0.001 4.001 21 C -0.087 4.087 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.077 4.077 26 C -0.170 4.170 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.258 0.742 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.422 -7.324 4.529 9.680 hybrid contribution 0.697 1.208 0.109 1.399 sum -3.724 -6.116 4.638 8.531 Atomic orbital electron populations 1.20805 0.91310 1.02366 1.02065 1.20832 0.94626 0.92127 0.99544 1.23135 0.95071 0.97259 1.01085 1.18397 0.87955 0.84087 0.81658 1.90760 1.69965 1.30670 1.55580 1.43281 1.04129 1.04834 1.62345 1.19454 1.08639 0.87741 1.31377 0.88900 1.25436 0.96920 1.00463 0.93644 1.69878 1.29464 1.31885 1.17286 0.86107 0.78874 0.82357 0.78813 1.19028 1.20458 1.20592 1.21193 0.81856 1.05657 0.91175 1.21852 0.85600 1.05059 1.03718 1.23802 0.92067 0.71121 0.80516 1.90702 1.70669 1.45500 1.33257 1.84594 1.25978 1.86033 1.37062 1.18457 0.96239 0.92368 0.93073 1.20913 0.95783 0.94885 0.97123 1.20802 1.00269 0.95668 0.97807 1.20933 1.00634 0.99770 0.93337 1.20707 0.99427 0.96528 0.97658 1.19791 0.98980 0.94545 0.94422 1.20798 1.00381 1.00856 0.94925 0.91185 0.91885 0.91390 0.85230 0.91782 0.91735 0.86473 0.87942 0.88463 0.74182 0.87241 0.87171 0.87267 0.87108 0.91340 0.92404 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.60 36.01 0.35 -1.07 16 2 C -0.07 -1.18 4.39 -102.16 -0.45 -1.63 16 3 C -0.14 -2.89 8.95 -37.53 -0.34 -3.22 16 4 C 0.49 11.44 7.49 -13.05 -0.10 11.34 16 5 O -0.58 -14.49 12.43 5.13 0.06 -14.43 16 6 N -0.43 -10.39 2.53 -116.47 -0.29 -10.68 16 7 C -0.34 -8.29 8.51 -15.05 -0.13 -8.41 16 8 H 0.09 2.11 6.68 -52.49 -0.35 1.76 16 9 C 0.04 1.04 4.97 -17.44 -0.09 0.95 16 10 N -0.85 -22.20 11.29 55.51 0.63 -21.58 16 11 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 C 0.13 3.00 4.22 -4.04 -0.02 2.98 16 16 C -0.12 -2.45 6.12 -27.88 -0.17 -2.62 16 17 C 0.48 9.03 8.33 36.01 0.30 9.33 16 18 O -0.51 -11.18 16.74 -18.75 -0.31 -11.49 16 19 O -0.53 -7.66 13.42 -39.26 -0.53 -8.19 16 20 C 0.00 -0.02 3.35 -105.05 -0.35 -0.38 16 21 C -0.07 -1.23 7.93 -39.10 -0.31 -1.54 16 22 C -0.13 -2.09 10.03 -39.65 -0.40 -2.49 16 23 C -0.13 -2.02 10.04 -39.45 -0.40 -2.42 16 24 C -0.13 -2.03 9.69 -39.65 -0.38 -2.41 16 25 C -0.08 -1.34 5.92 -104.14 -0.62 -1.96 16 26 C -0.11 -1.70 9.62 36.00 0.35 -1.35 16 27 H 0.07 0.83 6.70 -51.93 -0.35 0.48 16 28 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.13 2.46 6.47 -52.49 -0.34 2.12 16 31 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.06 1.68 7.48 -51.93 -0.39 1.29 16 33 H 0.12 3.06 5.31 -51.93 -0.28 2.78 16 34 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 35 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.40 3.90 9.10 45.56 0.41 4.32 16 37 H 0.11 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.07 0.93 5.30 -51.93 -0.28 0.65 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -30.92 362.78 -7.68 -38.59 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.92 Total: 13.57 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.75 Total: -4.91 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.33 Total: -32.26 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.78 Total: -34.11 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.92 -7.68 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602951292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.777 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds