Wall clock time and date at job start Tue Mar 31 2020 11:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34978 * 120.00363 * 2 1 4 4 C 1.46226 * 120.00456 * 179.97438 * 3 2 1 5 5 O 1.21763 * 119.99751 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00291 * 180.02562 * 4 3 2 7 7 C 1.36711 * 119.99763 * 0.02562 * 6 4 3 8 8 H 1.07999 * 120.00160 * 35.61307 * 7 6 4 9 9 C 1.39127 * 120.00130 * 215.33608 * 7 6 4 10 10 N 1.31324 * 119.99587 * 20.64291 * 9 7 6 11 11 Si 1.86792 * 120.00298 * 200.63750 * 9 7 6 12 12 H 1.48497 * 109.47377 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46835 * 120.00101 * 11 9 7 14 14 H 1.48498 * 109.47676 * 240.00173 * 11 9 7 15 15 C 1.46495 * 119.99980 * 180.02562 * 6 4 3 16 16 C 1.53003 * 109.47116 * 273.22231 * 15 6 4 17 17 C 1.50702 * 109.47214 * 180.02562 * 16 15 6 18 18 O 1.20820 * 120.00192 * 359.97438 * 17 16 15 19 19 O 1.34231 * 119.99723 * 180.02562 * 17 16 15 20 20 C 1.47149 * 120.00021 * 180.02562 * 2 1 3 21 21 C 1.39896 * 120.17060 * 254.72360 * 20 2 1 22 22 C 1.37855 * 119.82116 * 179.76803 * 21 20 2 23 23 C 1.38433 * 120.17686 * 0.50446 * 22 21 20 24 24 C 1.38393 * 120.34898 * 359.74997 * 23 22 21 25 25 C 1.37899 * 120.17620 * 359.97438 * 24 23 22 26 26 C 1.50697 * 120.09031 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46531 * 89.99869 * 1 2 3 28 28 H 1.08999 * 109.47026 * 209.99460 * 1 2 3 29 29 H 1.08997 * 109.46669 * 330.00061 * 1 2 3 30 30 H 1.07999 * 119.99560 * 0.02562 * 3 2 1 31 31 H 0.96999 * 119.99898 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.47830 * 33.22383 * 15 6 4 33 33 H 1.09001 * 109.47371 * 153.22632 * 15 6 4 34 34 H 1.09001 * 109.47019 * 300.00183 * 16 15 6 35 35 H 1.09001 * 109.46673 * 59.99974 * 16 15 6 36 36 H 0.96702 * 116.99549 * 179.97438 * 19 17 16 37 37 H 1.08008 * 120.09134 * 359.97438 * 21 20 2 38 38 H 1.08004 * 119.91657 * 180.25369 * 22 21 20 39 39 H 1.07999 * 119.82944 * 179.76442 * 23 22 21 40 40 H 1.08003 * 119.91382 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.47126 * 270.01760 * 26 25 24 42 42 H 1.08991 * 109.47310 * 30.02215 * 26 25 24 43 43 H 1.08998 * 109.47209 * 150.02741 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1820 1.1689 0.0000 4 6 3.6442 1.1689 0.0006 5 8 4.2530 0.1144 0.0006 6 7 4.3182 2.3361 0.0011 7 6 3.6346 3.5200 0.0016 8 1 2.7061 3.6073 0.5463 9 6 4.1380 4.6143 -0.6947 10 7 5.0115 4.4338 -1.6586 11 14 3.5712 6.3399 -0.2589 12 1 2.5913 6.2727 0.8548 13 1 4.7406 7.1540 0.1597 14 1 2.9317 6.9652 -1.4444 15 6 5.7831 2.3360 0.0011 16 6 6.2931 2.2543 1.4413 17 6 7.8001 2.2549 1.4414 18 8 8.4043 2.3141 0.3967 19 8 8.4712 2.1886 2.6020 20 6 2.2428 -1.2743 -0.0006 21 6 2.8703 -1.7244 1.1659 22 6 3.5536 -2.9217 1.1586 23 6 3.6286 -3.6730 -0.0017 24 6 3.0150 -3.2320 -1.1612 25 6 2.3229 -2.0393 -1.1687 26 6 1.6559 -1.5607 -2.4324 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3632 0.8900 0.5138 30 1 1.6420 2.1042 0.0004 31 1 5.3622 5.1966 -2.1444 32 1 6.1465 1.4766 -0.5623 33 1 6.1465 3.2537 -0.4614 34 1 5.9298 3.1137 2.0047 35 1 5.9297 1.3366 1.9038 36 1 9.4369 2.1914 2.5515 37 1 2.8167 -1.1371 2.0708 38 1 4.0351 -3.2726 2.0594 39 1 4.1686 -4.6082 -0.0022 40 1 3.0783 -3.8235 -2.0626 41 1 2.3547 -0.9485 -3.0026 42 1 1.3531 -2.4196 -3.0311 43 1 0.7777 -0.9676 -2.1776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602951292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:01 Heat of formation + Delta-G solvation = -101.557543 kcal Electronic energy + Delta-G solvation = -26978.782110 eV Core-core repulsion = 23181.625430 eV Total energy + Delta-G solvation = -3797.156680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37323 -40.77704 -39.70137 -37.27270 -36.83711 -35.65964 -33.79310 -33.34037 -32.48570 -30.76879 -28.81594 -27.70431 -27.07375 -25.55377 -23.82170 -22.41798 -22.05569 -21.20581 -20.09070 -19.16849 -18.50113 -17.92663 -17.55593 -17.00987 -16.78184 -16.33063 -16.15728 -16.09416 -15.35626 -15.26155 -14.90537 -14.56198 -14.33527 -14.18350 -14.10248 -13.94474 -13.72557 -13.58782 -13.28429 -13.04639 -12.94230 -12.80816 -12.78876 -12.63992 -12.59307 -12.45947 -12.04747 -11.90627 -11.85712 -11.68570 -11.59546 -11.06021 -10.45396 -9.89789 -9.49950 -9.38796 -9.02375 -8.27409 -6.02002 0.38526 0.67339 0.81054 1.16038 1.45446 1.50258 1.62475 2.01624 2.33137 2.62306 3.00729 3.16448 3.18170 3.85353 4.00689 4.09479 4.09986 4.13290 4.29016 4.31920 4.48143 4.52368 4.65560 4.71461 4.72999 4.75354 4.78732 4.86682 4.91308 4.98156 5.01726 5.18399 5.24195 5.36740 5.43127 5.47766 5.51419 5.57259 5.68894 5.75275 5.83958 5.87477 6.00505 6.32410 6.43785 6.97412 7.15298 7.65757 8.08680 8.73770 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.005232 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.616601 B = 5350.891886 C = 7124.879216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.031 4.031 3 C -0.187 4.187 4 C 0.481 3.519 5 O -0.606 6.606 6 N -0.445 5.445 7 C -0.350 4.350 8 H 0.106 0.894 9 C -0.002 4.002 10 N -0.894 5.894 11 Si 0.981 3.019 12 H -0.249 1.249 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.134 3.866 16 C -0.114 4.114 17 C 0.494 3.506 18 O -0.550 6.550 19 O -0.507 6.507 20 C -0.030 4.030 21 C -0.089 4.089 22 C -0.137 4.137 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.095 4.095 26 C -0.111 4.111 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.270 0.730 32 H 0.029 0.971 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.426 0.574 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 -7.620 6.110 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.033 4.033 3 C -0.207 4.207 4 C 0.274 3.726 5 O -0.494 6.494 6 N -0.163 5.163 7 C -0.477 4.477 8 H 0.124 0.876 9 C -0.205 4.205 10 N -0.531 5.531 11 Si 0.805 3.195 12 H -0.172 1.172 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.009 3.991 16 C -0.153 4.153 17 C 0.338 3.662 18 O -0.441 6.441 19 O -0.320 6.320 20 C -0.030 4.030 21 C -0.107 4.107 22 C -0.155 4.155 23 C -0.150 4.150 24 C -0.152 4.152 25 C -0.096 4.096 26 C -0.167 4.167 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.154 0.846 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.288 0.712 37 H 0.123 0.877 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.906 -7.968 5.720 11.449 hybrid contribution 1.178 1.177 -0.219 1.680 sum -4.728 -6.791 5.501 9.936 Atomic orbital electron populations 1.20944 0.87886 1.04045 1.03682 1.21329 0.96869 0.90944 0.94207 1.22955 0.93046 0.98640 1.06094 1.19006 0.89528 0.83504 0.80518 1.90724 1.70929 1.31284 1.56470 1.43469 1.04095 1.05399 1.63287 1.19803 1.09062 0.87743 1.31109 0.87648 1.26291 0.96936 1.04060 0.93187 1.70015 1.31412 1.32763 1.18881 0.85053 0.78413 0.77317 0.78716 1.17240 1.20836 1.20814 1.20892 0.82378 1.02695 0.93146 1.21601 0.86872 1.05710 1.01072 1.23406 0.91662 0.70318 0.80825 1.90700 1.71227 1.47357 1.34785 1.84506 1.28145 1.84966 1.34406 1.18746 0.97353 0.93046 0.93828 1.21040 0.96671 0.95812 0.97157 1.21127 0.99904 0.95300 0.99120 1.21335 1.00139 1.00678 0.92844 1.21101 0.98822 0.96459 0.98855 1.20134 0.99532 0.95068 0.94825 1.20819 0.99960 1.01798 0.94168 0.89297 0.90228 0.89718 0.84577 0.92016 0.95243 0.88759 0.86633 0.88206 0.71202 0.87682 0.85141 0.84404 0.84720 0.93543 0.89612 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 9.60 71.24 0.68 -1.87 16 2 C -0.03 -1.04 4.39 -18.27 -0.08 -1.12 16 3 C -0.19 -7.48 8.95 23.60 0.21 -7.27 16 4 C 0.48 23.25 7.49 86.32 0.65 23.90 16 5 O -0.61 -31.14 12.43 -4.55 -0.06 -31.19 16 6 N -0.44 -22.27 2.53 -640.58 -1.62 -23.90 16 7 C -0.35 -17.06 8.51 84.15 0.72 -16.35 16 8 H 0.11 4.76 6.68 -2.91 -0.02 4.74 16 9 C 0.00 -0.09 4.97 84.98 0.42 0.33 16 10 N -0.89 -48.42 11.29 21.69 0.24 -48.18 16 11 Si 0.98 38.39 29.60 68.60 2.03 40.42 16 12 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 13 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 15 C 0.13 6.69 4.22 86.38 0.36 7.06 16 16 C -0.11 -4.59 6.12 29.85 0.18 -4.41 16 17 C 0.49 18.49 8.33 71.24 0.59 19.08 16 18 O -0.55 -24.49 16.74 21.98 0.37 -24.12 16 19 O -0.51 -13.85 13.42 -51.43 -0.69 -14.54 16 20 C -0.03 -1.06 3.35 -20.14 -0.07 -1.13 16 21 C -0.09 -3.16 7.93 22.58 0.18 -2.98 16 22 C -0.14 -4.35 10.03 22.23 0.22 -4.12 16 23 C -0.13 -3.92 10.04 22.35 0.22 -3.70 16 24 C -0.13 -4.13 9.69 22.23 0.22 -3.92 16 25 C -0.10 -3.21 5.92 -19.55 -0.12 -3.33 16 26 C -0.11 -3.20 9.62 71.24 0.69 -2.51 16 27 H 0.09 1.83 6.70 -2.39 -0.02 1.81 16 28 H 0.08 1.64 8.11 -2.39 -0.02 1.62 16 29 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 30 H 0.14 5.14 6.47 -2.91 -0.02 5.12 16 31 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.03 1.62 7.48 -2.39 -0.02 1.61 16 33 H 0.09 5.19 5.31 -2.39 -0.01 5.18 16 34 H 0.12 4.33 8.14 -2.39 -0.02 4.32 16 35 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 36 H 0.43 7.28 9.10 -74.06 -0.67 6.61 16 37 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 40 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 43 H 0.08 1.99 5.30 -2.39 -0.01 1.97 16 Total: -1.00 -69.73 362.78 5.73 -64.00 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: 0.37 Total: 39.83 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.08 Total: -2.32 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.38 Total: -72.08 kcal Atomic # 8 Polarization: -69.48 SS G_CDS: -0.38 Total: -69.86 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -69.73 5.73 -64.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602951292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.555 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds