Wall clock time and date at job start Tue Mar 31 2020 11:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38078 * 119.85175 * 2 1 4 4 C 1.39721 * 120.13947 * 179.72628 * 3 2 1 5 5 C 1.47741 * 120.07755 * 180.24891 * 4 3 2 6 6 O 1.21469 * 120.00473 * 0.29951 * 5 4 3 7 7 O 1.34712 * 119.99604 * 180.29484 * 5 4 3 8 8 C 1.39379 * 119.83978 * 0.54816 * 4 3 2 9 9 C 1.39287 * 119.70526 * 359.72416 * 8 4 3 10 10 C 1.47858 * 120.07295 * 180.02562 * 9 8 4 11 11 O 1.21549 * 120.00098 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00099 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00113 * 179.97438 * 12 10 9 14 14 H 1.08995 * 110.01683 * 325.69639 * 13 12 10 15 15 C 1.53875 * 110.03499 * 87.09016 * 13 12 10 16 16 C 1.54263 * 106.59977 * 119.28341 * 15 13 12 17 17 C 1.54884 * 104.19514 * 23.61149 * 16 15 13 18 18 H 1.08997 * 110.76106 * 80.55340 * 17 16 15 19 19 C 1.50707 * 110.75753 * 203.74418 * 17 16 15 20 20 H 1.07996 * 120.00434 * 118.54203 * 19 17 16 21 21 C 1.37878 * 119.99506 * 298.54751 * 19 17 16 22 22 N 1.31517 * 119.99660 * 179.97438 * 21 19 17 23 23 Si 1.86800 * 120.00385 * 359.97438 * 21 19 17 24 24 H 1.48499 * 109.46964 * 90.00239 * 23 21 19 25 25 H 1.48499 * 109.47274 * 210.00336 * 23 21 19 26 26 H 1.48503 * 109.47039 * 330.00309 * 23 21 19 27 27 C 1.54271 * 110.03096 * 204.30867 * 13 12 10 28 28 C 1.38064 * 119.84684 * 180.27607 * 2 1 3 29 29 H 1.08999 * 109.47015 * 269.72882 * 1 2 3 30 30 H 1.09000 * 109.46646 * 29.72035 * 1 2 3 31 31 H 1.09000 * 109.47248 * 149.72752 * 1 2 3 32 32 H 1.08003 * 119.93215 * 0.02562 * 3 2 1 33 33 H 0.96698 * 116.99686 * 179.97438 * 7 5 4 34 34 H 1.08001 * 120.14975 * 179.75053 * 8 4 3 35 35 H 0.97004 * 119.99762 * 359.97438 * 12 10 9 36 36 H 1.08994 * 110.02961 * 238.57136 * 15 13 12 37 37 H 1.09004 * 110.03210 * 0.02562 * 15 13 12 38 38 H 1.08997 * 110.48827 * 142.28725 * 16 15 13 39 39 H 1.08998 * 110.48741 * 264.93297 * 16 15 13 40 40 H 0.97002 * 119.99515 * 179.97438 * 22 21 19 41 41 H 1.09004 * 110.48448 * 335.77917 * 27 13 12 42 42 H 1.09001 * 110.48729 * 98.42759 * 27 13 12 43 43 H 1.08002 * 119.92087 * 359.97149 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1944 1.1976 0.0000 4 6 3.5915 1.2046 0.0058 5 6 4.3255 2.4868 0.0113 6 8 3.7144 3.5365 0.0164 7 8 5.6726 2.4916 0.0109 8 6 4.2911 -0.0009 0.0000 9 6 3.5912 -1.2051 -0.0057 10 6 4.3252 -2.4886 -0.0113 11 8 3.7131 -3.5388 -0.0158 12 7 5.6730 -2.4943 -0.0115 13 6 6.4002 -3.7660 -0.0164 14 1 5.8510 -4.5121 0.5579 15 6 6.5980 -4.2545 -1.4621 16 6 8.1208 -4.3393 -1.6941 17 6 8.7134 -4.4969 -0.2719 18 1 8.6389 -5.5307 0.0654 19 6 10.1449 -4.0271 -0.2346 20 1 10.4261 -3.2021 0.4031 21 6 11.0955 -4.6504 -1.0149 22 7 12.3446 -4.2401 -0.9828 23 14 10.6093 -6.0777 -2.1176 24 1 10.2129 -5.5598 -3.4517 25 1 11.7618 -7.0021 -2.2678 26 1 9.4667 -6.8059 -1.5097 27 6 7.8092 -3.5714 0.5809 28 6 2.1942 -1.1975 -0.0058 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3632 0.8925 -0.5095 31 1 -0.3634 -0.8875 -0.5181 32 1 1.6508 2.1309 0.0004 33 1 6.1085 3.3548 0.0142 34 1 5.3712 -0.0013 0.0003 35 1 6.1614 -1.6562 -0.0082 36 1 6.1456 -5.2379 -1.5891 37 1 6.1534 -3.5451 -2.1601 38 1 8.3655 -5.2064 -2.3075 39 1 8.4871 -3.4250 -2.1609 40 1 13.0134 -4.6789 -1.5315 41 1 8.1253 -2.5329 0.4819 42 1 7.8260 -3.8784 1.6266 43 1 1.6504 -2.1306 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605140515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:08 Heat of formation + Delta-G solvation = -115.007517 kcal Electronic energy + Delta-G solvation = -25763.057630 eV Core-core repulsion = 21965.317715 eV Total energy + Delta-G solvation = -3797.739915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95110 -40.06170 -38.75750 -37.26940 -36.42144 -34.15183 -33.25297 -32.19724 -31.66066 -28.57012 -27.92838 -27.27082 -25.20173 -24.14156 -23.27383 -21.37976 -20.52243 -19.90713 -19.24960 -18.31851 -17.94832 -16.93248 -16.67147 -16.39026 -15.99562 -15.85289 -15.42767 -15.07748 -14.73123 -14.42883 -14.06475 -13.94376 -13.68965 -13.38541 -12.82462 -12.65193 -12.59110 -12.46139 -12.41682 -12.05492 -12.00595 -11.88157 -11.70309 -11.19759 -11.02007 -10.99472 -10.52193 -10.19725 -10.04939 -9.83399 -9.78018 -9.51540 -9.48413 -9.25638 -9.05513 -8.81658 -8.56132 -6.09982 -4.09320 0.20139 0.56328 2.02398 2.60648 2.78861 3.16927 3.27990 3.37840 3.39317 3.51995 4.20969 4.33350 4.40358 4.53303 4.70061 4.76641 4.82604 5.05762 5.17952 5.21866 5.25768 5.33238 5.34593 5.39787 5.53210 5.62762 5.68984 5.85594 5.97422 6.05539 6.08230 6.11762 6.25153 6.29248 6.36794 6.44081 6.50737 6.63247 6.78946 6.96518 7.03866 7.47783 7.51643 7.57707 7.73626 8.21283 8.48798 8.93063 9.53065 11.03174 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.003025 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.095017 B = 9252.728145 C =10516.830835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 C -0.035 4.035 4 C -0.132 4.132 5 C 0.530 3.470 6 O -0.515 6.515 7 O -0.508 6.508 8 C -0.034 4.034 9 C -0.137 4.137 10 C 0.555 3.445 11 O -0.539 6.539 12 N -0.711 5.711 13 C 0.137 3.863 14 H 0.086 0.914 15 C -0.131 4.131 16 C -0.131 4.131 17 C 0.015 3.985 18 H 0.035 0.965 19 C -0.511 4.511 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.902 5.902 23 Si 0.882 3.118 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.264 1.264 27 C -0.110 4.110 28 C -0.026 4.026 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.418 0.582 34 H 0.145 0.855 35 H 0.399 0.601 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.263 0.737 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.971 11.306 1.701 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 C -0.053 4.053 4 C -0.133 4.133 5 C 0.375 3.625 6 O -0.405 6.405 7 O -0.320 6.320 8 C -0.053 4.053 9 C -0.140 4.140 10 C 0.341 3.659 11 O -0.417 6.417 12 N -0.361 5.361 13 C 0.033 3.967 14 H 0.104 0.896 15 C -0.170 4.170 16 C -0.169 4.169 17 C -0.004 4.004 18 H 0.053 0.947 19 C -0.549 4.549 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.540 5.540 23 Si 0.711 3.289 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.189 1.189 27 C -0.148 4.148 28 C -0.045 4.045 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.160 0.840 33 H 0.278 0.722 34 H 0.162 0.838 35 H 0.235 0.765 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.547 10.406 1.630 23.983 hybrid contribution 0.546 0.297 -0.759 0.981 sum -21.001 10.703 0.871 23.587 Atomic orbital electron populations 1.20816 0.89741 1.03486 1.02996 1.19846 0.97017 0.92037 1.01618 1.21324 0.92001 0.98905 0.93094 1.18910 0.93359 0.90517 1.10490 1.20775 0.80618 0.89169 0.71955 1.90892 1.69343 1.33788 1.46442 1.84567 1.20745 1.41171 1.85473 1.21681 1.00778 0.90531 0.92321 1.20060 0.94444 0.93268 1.06243 1.18128 0.82617 0.88285 0.76854 1.90768 1.68014 1.32705 1.50212 1.46278 1.05620 1.10584 1.73658 1.21921 0.93304 0.84225 0.97225 0.89576 1.22559 0.98283 1.00574 0.95541 1.22831 0.92563 1.00953 1.00546 1.20075 0.94874 0.95323 0.90136 0.94668 1.20964 0.90112 1.18029 1.25754 0.90802 1.24991 0.94772 0.96681 0.96614 1.69903 1.01615 1.41759 1.40735 0.86902 0.77613 0.82944 0.81405 1.20456 1.22294 1.18926 1.22602 0.91447 1.01561 0.99227 1.21489 0.92756 0.98737 0.91485 0.90602 0.91012 0.90834 0.84017 0.72245 0.83756 0.76467 0.92102 0.92400 0.93497 0.91401 0.92673 0.91279 0.92035 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.00 36.01 0.36 -0.27 16 2 C -0.11 -0.86 5.87 -104.74 -0.61 -1.48 16 3 C -0.03 -0.30 9.23 -39.09 -0.36 -0.67 16 4 C -0.13 -1.28 5.87 -105.04 -0.62 -1.90 16 5 C 0.53 5.27 8.27 34.61 0.29 5.56 16 6 O -0.51 -6.28 17.12 -19.24 -0.33 -6.61 16 7 O -0.51 -3.91 12.67 -40.52 -0.51 -4.42 16 8 C -0.03 -0.34 9.10 -38.77 -0.35 -0.69 16 9 C -0.14 -1.54 5.87 -105.02 -0.62 -2.16 16 10 C 0.55 7.82 7.77 -12.32 -0.10 7.73 16 11 O -0.54 -9.28 16.00 5.32 0.09 -9.20 16 12 N -0.71 -9.74 4.94 -53.66 -0.26 -10.00 16 13 C 0.14 2.22 3.23 -66.81 -0.22 2.01 16 14 H 0.09 1.45 7.59 -51.93 -0.39 1.06 16 15 C -0.13 -2.27 6.59 -25.61 -0.17 -2.43 16 16 C -0.13 -2.68 5.08 -25.08 -0.13 -2.80 16 17 C 0.02 0.33 2.30 -89.74 -0.21 0.13 16 18 H 0.04 0.80 7.37 -51.93 -0.38 0.42 16 19 C -0.51 -13.68 9.12 -34.44 -0.31 -13.99 16 20 H 0.07 2.13 8.03 -52.49 -0.42 1.71 16 21 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 22 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 23 Si 0.88 21.43 24.46 -169.99 -4.16 17.27 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.26 -6.15 6.48 56.52 0.37 -5.79 16 27 C -0.11 -1.98 5.95 -25.03 -0.15 -2.13 16 28 C -0.03 -0.26 9.23 -39.10 -0.36 -0.62 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.14 1.09 7.64 -52.48 -0.40 0.69 16 33 H 0.42 1.42 9.11 45.56 0.42 1.84 16 34 H 0.14 1.26 5.95 -52.49 -0.31 0.95 16 35 H 0.40 4.61 6.38 -40.82 -0.26 4.35 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.95 7.92 -51.93 -0.41 0.54 16 38 H 0.05 0.99 4.91 -51.93 -0.25 0.74 16 39 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 1.21 7.63 -51.93 -0.40 0.81 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.14 1.40 7.64 -52.49 -0.40 0.99 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -33.66 355.88 -7.61 -41.26 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.91 Total: 4.39 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -3.65 Total: -11.82 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.51 Total: -36.24 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.76 Total: -20.23 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.16 Total: 17.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.66 -7.61 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605140515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.743 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds