Wall clock time and date at job start Tue Mar 31 2020 11:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48500 * 109.47291 * 269.99486 * 3 2 1 5 5 H 1.48498 * 109.47045 * 29.99731 * 3 2 1 6 6 H 1.48502 * 109.47206 * 149.99547 * 3 2 1 7 7 C 1.37872 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00506 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.53123 * 109.52273 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.27415 * 177.56324 * 10 9 7 12 12 N 1.46848 * 109.52295 * 300.81817 * 11 10 9 13 13 C 1.39456 * 110.99930 * 185.84477 * 12 11 10 14 14 C 1.38745 * 120.12192 * 299.99962 * 13 12 11 15 15 C 1.38339 * 120.01312 * 179.72819 * 14 13 12 16 16 F 1.35110 * 119.86421 * 179.97438 * 15 14 13 17 17 C 1.38651 * 120.27098 * 359.97438 * 15 14 13 18 18 C 1.37974 * 120.24707 * 0.03170 * 17 15 14 19 19 C 1.39259 * 119.97828 * 359.94927 * 18 17 15 20 20 C 1.48355 * 120.13067 * 180.02562 * 19 18 17 21 21 N 1.34083 * 126.68052 * 180.02562 * 20 19 18 22 22 N 1.28981 * 107.26426 * 179.97438 * 21 20 19 23 23 N 1.28736 * 108.95792 * 359.97438 * 22 21 20 24 24 H 0.96996 * 125.33510 * 180.02562 * 23 22 21 25 25 N 1.28878 * 109.32379 * 359.76789 * 23 22 21 26 26 C 1.46849 * 111.19672 * 61.74589 * 12 11 10 27 27 C 1.53035 * 109.52339 * 298.25973 * 26 12 11 28 28 H 0.97003 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.57008 * 59.84358 * 9 7 2 30 30 H 1.09000 * 109.50217 * 57.62356 * 10 9 7 31 31 H 1.08999 * 109.50576 * 297.50271 * 10 9 7 32 32 H 1.09005 * 109.45858 * 180.80907 * 11 10 9 33 33 H 1.09000 * 109.46549 * 60.83754 * 11 10 9 34 34 H 1.08004 * 119.98858 * 359.70215 * 14 13 12 35 35 H 1.07997 * 119.87652 * 180.02562 * 17 15 14 36 36 H 1.07999 * 120.00439 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.45815 * 58.27453 * 26 12 11 38 38 H 1.09001 * 109.46212 * 178.23796 * 26 12 11 39 39 H 1.09006 * 109.50072 * 299.23144 * 27 26 12 40 40 H 1.09007 * 109.50228 * 179.12072 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0232 -2.6372 0.0023 11 6 5.5524 -2.6311 -0.0585 12 7 5.9923 -1.9378 -1.2760 13 6 7.3753 -2.0281 -1.4304 14 6 8.2197 -1.5130 -0.4574 15 6 9.5912 -1.6088 -0.6102 16 9 10.4106 -1.1057 0.3391 17 6 10.1285 -2.2188 -1.7334 18 6 9.2991 -2.7346 -2.7079 19 6 7.9168 -2.6443 -2.5644 20 6 7.0218 -3.1983 -3.6099 21 7 5.6811 -3.1832 -3.6067 22 7 5.2892 -3.7622 -4.6905 23 7 6.3220 -4.1337 -5.3632 24 1 6.2998 -4.5924 -6.2176 25 7 7.3901 -3.7957 -4.7262 26 6 5.5529 -0.5367 -1.2774 27 6 4.0237 -0.4802 -1.2528 28 1 -0.4850 0.8401 -0.0004 29 1 3.8763 -0.6779 0.8892 30 1 3.6266 -3.1646 -0.8653 31 1 3.6973 -3.1382 0.9138 32 1 5.9193 -3.6574 -0.0724 33 1 5.9486 -2.1156 0.8163 34 1 7.8059 -1.0369 0.4193 35 1 11.2002 -2.2904 -1.8459 36 1 9.7217 -3.2087 -3.5814 37 1 5.9492 -0.0310 -0.3969 38 1 5.9203 -0.0417 -2.1763 39 1 3.6271 -0.9736 -2.1402 40 1 3.6982 0.5600 -1.2380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606346154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:06 Heat of formation + Delta-G solvation = 122.868197 kcal Electronic energy + Delta-G solvation = -26763.312980 eV Core-core repulsion = 22917.013327 eV Total energy + Delta-G solvation = -3846.299653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.09603 -44.26317 -40.13916 -37.69034 -34.28707 -34.02918 -33.42223 -31.80021 -30.40208 -30.22199 -29.37635 -25.86621 -24.74335 -24.05698 -22.90725 -22.49131 -21.60966 -21.06530 -19.16561 -18.77455 -17.78894 -16.96949 -16.69858 -16.62891 -16.42161 -15.77976 -15.58269 -14.52205 -14.41261 -14.20957 -13.89951 -13.66113 -13.27496 -13.11544 -13.02971 -12.72059 -12.54918 -12.15948 -11.96719 -11.90714 -11.73527 -11.30825 -11.12995 -10.86687 -10.82790 -10.79239 -10.51092 -10.09944 -9.88028 -9.58307 -9.16393 -9.00342 -8.88582 -8.57313 -8.44785 -8.11565 -5.99279 -3.96833 0.48986 0.95577 1.32237 2.32566 2.37744 3.31815 3.41156 3.42602 3.44530 3.73920 3.87120 4.08980 4.27192 4.47422 4.66485 4.76330 5.10623 5.21365 5.29532 5.32292 5.58431 5.59465 5.63103 5.71644 5.77484 5.83357 5.86699 5.97794 6.10917 6.13972 6.23310 6.39432 6.46696 6.48320 6.50205 6.81776 6.89151 7.01607 7.30159 7.44193 7.52727 7.73937 7.86576 8.37904 8.62294 9.06309 9.64001 11.14447 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.004923 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.981091 B = 5686.243073 C = 7225.657748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.094 4.094 11 C 0.065 3.935 12 N -0.486 5.486 13 C 0.173 3.827 14 C -0.190 4.190 15 C 0.126 3.874 16 F -0.137 7.137 17 C -0.167 4.167 18 C -0.049 4.049 19 C -0.013 4.013 20 C 0.220 3.780 21 N -0.202 5.202 22 N -0.059 5.059 23 N -0.239 5.239 24 H 0.470 0.530 25 N -0.307 5.307 26 C 0.066 3.934 27 C -0.113 4.113 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.166 -6.795 -8.097 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.092 0.908 9 C -0.005 4.005 10 C -0.131 4.131 11 C -0.061 4.061 12 N -0.207 5.207 13 C 0.076 3.924 14 C -0.212 4.212 15 C 0.106 3.894 16 F -0.116 7.116 17 C -0.185 4.185 18 C -0.069 4.069 19 C -0.018 4.018 20 C -0.059 4.059 21 N -0.075 5.075 22 N -0.055 5.055 23 N -0.083 5.083 24 H 0.324 0.676 25 N -0.160 5.160 26 C -0.060 4.060 27 C -0.151 4.151 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.153 -7.032 -8.722 23.058 hybrid contribution 1.330 1.334 0.411 1.928 sum 21.484 -5.699 -8.311 23.730 Atomic orbital electron populations 1.69904 1.06265 1.26715 1.51389 1.25009 0.94632 0.98892 0.94704 0.86886 0.79842 0.83867 0.77836 1.20618 1.22697 1.19229 1.21047 0.88819 0.94377 1.50072 0.90823 1.19183 0.96712 0.91955 0.92645 1.21483 0.90611 0.99423 1.01617 1.22262 0.98743 0.97130 0.87948 1.59624 1.05344 1.15979 1.39746 1.18712 0.90291 0.92359 0.91033 1.21805 0.92005 1.04873 1.02474 1.17732 0.87688 0.96784 0.87232 1.91519 1.72186 1.85001 1.62894 1.20991 1.01141 1.02502 0.93906 1.20915 0.90933 0.96604 0.98487 1.17235 0.90524 1.02088 0.91919 1.23294 0.90319 0.99664 0.92654 1.76671 1.08908 1.12706 1.09201 1.79152 1.14701 1.10667 1.00987 1.47744 1.01021 1.39203 1.20333 0.67647 1.74815 1.14115 1.18916 1.08153 1.22237 0.98829 0.85467 0.99445 1.22014 0.90640 0.99929 1.02524 0.92832 0.96141 0.91116 0.92271 0.91749 0.95084 0.84042 0.84113 0.83810 0.95195 0.91927 0.90516 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 3 Si 0.88 22.14 24.37 -169.99 -4.14 18.00 16 4 H -0.28 -6.83 6.89 56.52 0.39 -6.44 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 7 C -0.51 -14.18 9.14 -34.44 -0.31 -14.50 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.01 0.32 1.75 -91.65 -0.16 0.16 16 10 C -0.09 -1.86 5.32 -26.65 -0.14 -2.00 16 11 C 0.06 1.08 5.11 -3.83 -0.02 1.06 16 12 N -0.49 -8.01 2.82 -170.93 -0.48 -8.49 16 13 C 0.17 2.45 4.68 -83.56 -0.39 2.06 16 14 C -0.19 -2.43 8.66 -39.36 -0.34 -2.77 16 15 C 0.13 1.43 7.29 -39.39 -0.29 1.15 16 16 F -0.14 -1.61 17.26 2.25 0.04 -1.58 16 17 C -0.17 -1.56 10.01 -39.53 -0.40 -1.96 16 18 C -0.05 -0.49 9.69 -39.30 -0.38 -0.87 16 19 C -0.01 -0.17 5.89 -104.71 -0.62 -0.79 16 20 C 0.22 3.09 7.90 -156.28 -1.23 1.86 16 21 N -0.20 -3.29 10.93 32.14 0.35 -2.94 16 22 N -0.06 -0.83 13.47 60.35 0.81 -0.02 16 23 N -0.24 -2.38 7.90 60.35 0.48 -1.90 16 24 H 0.47 2.28 8.96 -340.35 -3.05 -0.77 16 25 N -0.31 -3.56 12.08 32.16 0.39 -3.17 16 26 C 0.07 1.18 5.17 -3.83 -0.02 1.16 16 27 C -0.11 -2.46 4.84 -26.66 -0.13 -2.59 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.03 0.49 7.33 -51.93 -0.38 0.11 16 34 H 0.14 1.80 7.12 -52.48 -0.37 1.43 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.14 1.14 7.88 -52.49 -0.41 0.73 16 37 H 0.03 0.52 7.54 -51.93 -0.39 0.13 16 38 H 0.06 1.06 8.11 -51.93 -0.42 0.64 16 39 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 40 H 0.05 1.10 3.39 -51.93 -0.18 0.92 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -32.76 328.62 -8.65 -41.41 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -7.29 Total: -2.93 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -4.53 Total: -16.14 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 2.32 Total: -43.71 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.76 -8.65 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.279 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds