Wall clock time and date at job start Tue Mar 31 2020 11:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48500 * 109.47291 * 269.99486 * 3 2 1 5 5 H 1.48498 * 109.47045 * 29.99731 * 3 2 1 6 6 H 1.48502 * 109.47206 * 149.99547 * 3 2 1 7 7 C 1.37872 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00506 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.53123 * 109.52273 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.27415 * 177.56324 * 10 9 7 12 12 N 1.46848 * 109.52295 * 300.81817 * 11 10 9 13 13 C 1.39456 * 110.99930 * 185.84477 * 12 11 10 14 14 C 1.38745 * 120.12192 * 299.99962 * 13 12 11 15 15 C 1.38339 * 120.01312 * 179.72819 * 14 13 12 16 16 F 1.35110 * 119.86421 * 179.97438 * 15 14 13 17 17 C 1.38651 * 120.27098 * 359.97438 * 15 14 13 18 18 C 1.37974 * 120.24707 * 0.03170 * 17 15 14 19 19 C 1.39259 * 119.97828 * 359.94927 * 18 17 15 20 20 C 1.48355 * 120.13067 * 180.02562 * 19 18 17 21 21 N 1.34083 * 126.68052 * 180.02562 * 20 19 18 22 22 N 1.28981 * 107.26426 * 179.97438 * 21 20 19 23 23 N 1.28736 * 108.95792 * 359.97438 * 22 21 20 24 24 H 0.96996 * 125.33510 * 180.02562 * 23 22 21 25 25 N 1.28878 * 109.32379 * 359.76789 * 23 22 21 26 26 C 1.46849 * 111.19672 * 61.74589 * 12 11 10 27 27 C 1.53035 * 109.52339 * 298.25973 * 26 12 11 28 28 H 0.97003 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.57008 * 59.84358 * 9 7 2 30 30 H 1.09000 * 109.50217 * 57.62356 * 10 9 7 31 31 H 1.08999 * 109.50576 * 297.50271 * 10 9 7 32 32 H 1.09005 * 109.45858 * 180.80907 * 11 10 9 33 33 H 1.09000 * 109.46549 * 60.83754 * 11 10 9 34 34 H 1.08004 * 119.98858 * 359.70215 * 14 13 12 35 35 H 1.07997 * 119.87652 * 180.02562 * 17 15 14 36 36 H 1.07999 * 120.00439 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.45815 * 58.27453 * 26 12 11 38 38 H 1.09001 * 109.46212 * 178.23796 * 26 12 11 39 39 H 1.09006 * 109.50072 * 299.23144 * 27 26 12 40 40 H 1.09007 * 109.50228 * 179.12072 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0232 -2.6372 0.0023 11 6 5.5524 -2.6311 -0.0585 12 7 5.9923 -1.9378 -1.2760 13 6 7.3753 -2.0281 -1.4304 14 6 8.2197 -1.5130 -0.4574 15 6 9.5912 -1.6088 -0.6102 16 9 10.4106 -1.1057 0.3391 17 6 10.1285 -2.2188 -1.7334 18 6 9.2991 -2.7346 -2.7079 19 6 7.9168 -2.6443 -2.5644 20 6 7.0218 -3.1983 -3.6099 21 7 5.6811 -3.1832 -3.6067 22 7 5.2892 -3.7622 -4.6905 23 7 6.3220 -4.1337 -5.3632 24 1 6.2998 -4.5924 -6.2176 25 7 7.3901 -3.7957 -4.7262 26 6 5.5529 -0.5367 -1.2774 27 6 4.0237 -0.4802 -1.2528 28 1 -0.4850 0.8401 -0.0004 29 1 3.8763 -0.6779 0.8892 30 1 3.6266 -3.1646 -0.8653 31 1 3.6973 -3.1382 0.9138 32 1 5.9193 -3.6574 -0.0724 33 1 5.9486 -2.1156 0.8163 34 1 7.8059 -1.0369 0.4193 35 1 11.2002 -2.2904 -1.8459 36 1 9.7217 -3.2087 -3.5814 37 1 5.9492 -0.0310 -0.3969 38 1 5.9203 -0.0417 -2.1763 39 1 3.6271 -0.9736 -2.1402 40 1 3.6982 0.5600 -1.2380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606346154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:05 Heat of formation + Delta-G solvation = 101.115585 kcal Electronic energy + Delta-G solvation = -26764.256244 eV Core-core repulsion = 22917.013327 eV Total energy + Delta-G solvation = -3847.242917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.95469 -45.23482 -41.24136 -38.95263 -35.77854 -35.16063 -34.37947 -33.74527 -31.75526 -31.31617 -30.57469 -27.58452 -25.69688 -25.09151 -24.28652 -23.96852 -22.77940 -22.25045 -20.42477 -20.05680 -18.79316 -18.78307 -17.93410 -17.57228 -17.42116 -16.90627 -16.64719 -16.10811 -15.85951 -15.28364 -15.02592 -14.81833 -14.79900 -14.68983 -14.26122 -14.13376 -13.73927 -13.58464 -13.39684 -13.24805 -12.86289 -12.71825 -12.34883 -12.18639 -12.12649 -12.08319 -11.86269 -11.70983 -11.65951 -11.39192 -10.95910 -10.82281 -10.60558 -10.00573 -9.48391 -9.34659 -8.25682 -6.27857 -0.40579 0.09983 0.35073 1.31626 1.35702 1.39916 1.46418 1.58562 2.35137 2.55061 2.73053 2.81228 3.09992 3.20482 3.34079 3.80527 3.97382 4.05447 4.13369 4.18390 4.26641 4.37205 4.39486 4.50224 4.59816 4.66498 4.69405 4.77203 4.89158 4.91014 4.96671 5.02622 5.13056 5.19891 5.26740 5.33190 5.57595 5.67972 5.72742 5.77548 5.84743 6.03542 6.38209 6.43198 6.78938 7.36746 7.38866 8.91798 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.004923 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.981091 B = 5686.243073 C = 7225.657748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.010 3.990 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.300 1.300 6 H -0.243 1.243 7 C -0.511 4.511 8 H 0.030 0.970 9 C 0.015 3.985 10 C -0.087 4.087 11 C 0.076 3.924 12 N -0.492 5.492 13 C 0.151 3.849 14 C -0.193 4.193 15 C 0.122 3.878 16 F -0.140 7.140 17 C -0.145 4.145 18 C -0.037 4.037 19 C -0.023 4.023 20 C 0.208 3.792 21 N -0.247 5.247 22 N -0.082 5.082 23 N -0.208 5.208 24 H 0.490 0.510 25 N -0.292 5.292 26 C 0.076 3.924 27 C -0.107 4.107 28 H 0.264 0.736 29 H 0.022 0.978 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.138 0.862 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.557 -6.561 -8.918 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.228 1.228 6 H -0.167 1.167 7 C -0.549 4.549 8 H 0.048 0.952 9 C -0.004 4.004 10 C -0.125 4.125 11 C -0.050 4.050 12 N -0.213 5.213 13 C 0.054 3.946 14 C -0.214 4.214 15 C 0.102 3.898 16 F -0.118 7.118 17 C -0.164 4.164 18 C -0.057 4.057 19 C -0.027 4.027 20 C -0.071 4.071 21 N -0.118 5.118 22 N -0.077 5.077 23 N -0.057 5.057 24 H 0.348 0.652 25 N -0.145 5.145 26 C -0.050 4.050 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.156 0.844 35 H 0.193 0.807 36 H 0.187 0.813 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 24.564 -6.826 -9.558 27.228 hybrid contribution -0.010 1.094 0.573 1.235 sum 24.554 -5.732 -8.985 26.767 Atomic orbital electron populations 1.70064 1.08254 1.27796 1.53384 1.25874 0.95375 1.02937 0.94437 0.85852 0.79289 0.78797 0.78542 1.19553 1.22802 1.16710 1.21386 0.91676 0.92739 1.49108 0.95162 1.19132 0.93368 0.94410 0.93484 1.21332 0.93558 0.96966 1.00627 1.22090 0.95649 0.98408 0.88883 1.59422 1.07580 1.14866 1.39457 1.18613 0.88829 0.94717 0.92409 1.21715 0.92684 1.04970 1.02029 1.17824 0.87153 0.97053 0.87806 1.91520 1.72056 1.85098 1.63154 1.21338 1.02767 1.00025 0.92242 1.21164 0.89511 0.95773 0.99252 1.17420 0.91648 1.02281 0.91348 1.23566 0.89871 1.00168 0.93531 1.76644 1.10454 1.14320 1.10427 1.79088 1.15707 1.11603 1.01308 1.47808 1.00041 1.37408 1.20460 0.65154 1.74782 1.14053 1.18271 1.07436 1.22034 0.95538 0.86979 1.00476 1.21802 0.93866 0.98481 1.00357 0.92757 0.95960 0.93260 0.92366 0.90264 0.93844 0.84377 0.80719 0.81337 0.94120 0.90860 0.92725 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 2 C 0.01 0.59 5.45 84.65 0.46 1.05 16 3 Si 0.95 46.13 24.37 68.60 1.67 47.80 16 4 H -0.27 -12.60 6.89 99.48 0.69 -11.91 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.24 -10.81 6.53 99.48 0.65 -10.16 16 7 C -0.51 -30.00 9.14 25.60 0.23 -29.77 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 9 C 0.01 0.70 1.75 -11.46 -0.02 0.68 16 10 C -0.09 -3.53 5.32 30.65 0.16 -3.37 16 11 C 0.08 2.43 5.11 86.33 0.44 2.87 16 12 N -0.49 -15.66 2.82 -694.72 -1.96 -17.62 16 13 C 0.15 3.94 4.68 38.47 0.18 4.12 16 14 C -0.19 -4.40 8.66 22.41 0.19 -4.20 16 15 C 0.12 2.34 7.29 22.39 0.16 2.50 16 16 F -0.14 -2.82 17.26 44.97 0.78 -2.04 16 17 C -0.15 -2.04 10.01 22.31 0.22 -1.82 16 18 C -0.04 -0.58 9.69 22.45 0.22 -0.36 16 19 C -0.02 -0.52 5.89 -19.92 -0.12 -0.64 16 20 C 0.21 5.46 7.90 137.32 1.08 6.55 16 21 N -0.25 -7.94 10.93 -52.22 -0.57 -8.51 16 22 N -0.08 -2.25 13.47 37.02 0.50 -1.75 16 23 N -0.21 -3.75 7.90 37.02 0.29 -3.46 16 24 H 0.49 3.65 8.96 -347.53 -3.12 0.54 16 25 N -0.29 -6.02 12.08 -52.17 -0.63 -6.65 16 26 C 0.08 2.60 5.17 86.32 0.45 3.05 16 27 C -0.11 -4.65 4.84 30.64 0.15 -4.51 16 28 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 29 H 0.02 1.05 7.19 -2.38 -0.02 1.03 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.08 2.32 8.11 -2.38 -0.02 2.30 16 33 H 0.04 1.30 7.33 -2.39 -0.02 1.28 16 34 H 0.14 3.18 7.12 -2.91 -0.02 3.16 16 35 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.17 1.82 7.88 -2.91 -0.02 1.80 16 37 H 0.04 1.31 7.54 -2.39 -0.02 1.29 16 38 H 0.07 2.36 8.11 -2.39 -0.02 2.34 16 39 H 0.05 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.04 1.70 3.39 -2.38 -0.01 1.69 16 Total: -1.00 -74.41 328.62 2.11 -72.31 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -2.09 Total: 4.91 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 3.82 Total: -23.83 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -2.07 Total: -99.15 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.67 Total: 47.80 kcal Total: -74.41 2.11 -72.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.423 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds