Wall clock time and date at job start Tue Mar 31 2020 11:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48502 * 109.47189 * 269.99642 * 3 2 1 5 5 H 1.48503 * 109.47255 * 29.99685 * 3 2 1 6 6 H 1.48499 * 109.47130 * 150.00084 * 3 2 1 7 7 C 1.37875 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46936 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 O 1.21273 * 119.99801 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99496 * 179.97438 * 12 11 10 15 15 N 1.40109 * 119.99481 * 180.02562 * 14 12 11 16 16 C 1.38914 * 119.99643 * 180.27884 * 15 14 12 17 17 C 1.39235 * 119.57709 * 179.44617 * 16 15 14 18 18 C 1.38061 * 119.21867 * 179.74818 * 17 16 15 19 19 C 1.39942 * 118.40294 * 0.51536 * 18 17 16 20 20 C 1.48432 * 120.45172 * 179.77557 * 19 18 17 21 21 N 1.34067 * 126.67296 * 359.66213 * 20 19 18 22 22 N 1.28987 * 107.26310 * 179.84234 * 21 20 19 23 23 N 1.28730 * 108.94806 * 0.42845 * 22 21 20 24 24 H 0.97002 * 125.33846 * 179.70364 * 23 22 21 25 25 N 1.28869 * 109.32194 * 359.73220 * 23 22 21 26 26 C 1.39122 * 119.09709 * 359.74709 * 19 18 17 27 27 N 1.31812 * 120.69307 * 359.97438 * 26 19 18 28 28 H 0.97001 * 119.99847 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 30 30 H 1.08998 * 109.46706 * 300.00155 * 9 7 2 31 31 H 1.09003 * 109.47201 * 60.00605 * 10 9 7 32 32 H 1.08998 * 109.47770 * 299.99773 * 10 9 7 33 33 H 1.09000 * 109.46887 * 59.99725 * 11 10 9 34 34 H 1.09007 * 109.46700 * 300.00268 * 11 10 9 35 35 H 0.97000 * 120.00718 * 0.02562 * 14 12 11 36 36 H 0.97001 * 119.99794 * 359.97438 * 15 14 12 37 37 H 1.08006 * 120.39042 * 0.02562 * 17 16 15 38 38 H 1.08004 * 120.79830 * 180.24501 * 18 17 16 39 39 H 1.08001 * 119.65291 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6364 0.0022 12 6 6.0540 -4.0573 0.0027 13 8 5.2659 -4.9790 0.0026 14 7 7.3791 -4.3034 0.0023 15 7 7.8461 -5.6243 0.0022 16 6 9.2119 -5.8781 0.0076 17 6 9.6664 -7.1941 0.0192 18 6 11.0253 -7.4378 0.0191 19 6 11.8978 -6.3437 0.0184 20 6 13.3672 -6.5533 0.0234 21 7 14.0080 -7.7309 0.0351 22 7 15.2729 -7.4784 0.0322 23 7 15.4445 -6.2026 0.0283 24 1 16.3035 -5.7520 0.0296 25 7 14.2961 -5.6179 0.0230 26 6 11.3692 -5.0568 0.0124 27 7 10.0651 -4.8652 0.0069 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8888 31 1 3.6587 -3.1509 -0.8876 32 1 3.6580 -3.1498 0.8924 33 1 5.9150 -2.1218 0.8918 34 1 5.9149 -2.1233 -0.8882 35 1 8.0094 -3.5661 0.0020 36 1 7.2158 -6.3616 0.0029 37 1 8.9641 -8.0147 0.0236 38 1 11.4058 -8.4486 0.0240 39 1 12.0343 -4.2060 0.0123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606348120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:50 Heat of formation + Delta-G solvation = 152.575080 kcal Electronic energy + Delta-G solvation = -23850.503625 eV Core-core repulsion = 20025.412121 eV Total energy + Delta-G solvation = -3825.091504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.83539 -40.79780 -39.62994 -36.50482 -34.82605 -34.37168 -34.03565 -32.85795 -32.33479 -31.84625 -29.48148 -28.00618 -25.44394 -24.74436 -24.11147 -23.21100 -22.33707 -21.00804 -20.02157 -19.65053 -18.69345 -17.78371 -17.53247 -16.93375 -16.66196 -16.33189 -15.80305 -15.75976 -14.85859 -14.72759 -14.31513 -14.29475 -13.74949 -13.70147 -13.64789 -13.01273 -12.68044 -12.64786 -12.46244 -12.05162 -11.78996 -11.68804 -11.53790 -11.29643 -11.04333 -10.81466 -10.24582 -10.18388 -10.05888 -9.92320 -9.74966 -9.60381 -9.55510 -9.16905 -8.52392 -7.76068 -6.02037 -4.00229 0.30324 0.77123 0.87017 1.69131 1.84093 1.95386 2.63902 3.24521 3.31001 3.38442 3.40781 3.45770 3.52369 3.78028 4.34206 4.45951 4.47476 4.55281 4.76515 4.84100 5.00436 5.13519 5.29376 5.31152 5.44392 5.48790 5.57823 5.71963 5.92523 5.96132 6.03902 6.44316 6.49660 6.62877 6.84414 6.93152 7.31294 7.33816 7.41779 7.65533 7.74631 7.80403 8.25659 8.56978 9.04314 9.59731 11.11521 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.033245 B = 0.001763 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.036254 B =15878.328178 C =16694.591000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.130 4.130 12 C 0.513 3.487 13 O -0.536 6.536 14 N -0.526 5.526 15 N -0.508 5.508 16 C 0.424 3.576 17 C -0.233 4.233 18 C 0.018 3.982 19 C -0.144 4.144 20 C 0.239 3.761 21 N -0.274 5.274 22 N -0.050 5.050 23 N -0.228 5.228 24 H 0.475 0.525 25 N -0.301 5.301 26 C 0.206 3.794 27 N -0.548 5.548 28 H 0.263 0.737 29 H 0.017 0.983 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.432 0.568 36 H 0.443 0.557 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.343 -12.963 0.069 35.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.171 4.171 12 C 0.301 3.699 13 O -0.410 6.410 14 N -0.275 5.275 15 N -0.234 5.234 16 C 0.186 3.814 17 C -0.259 4.259 18 C -0.009 4.009 19 C -0.154 4.154 20 C -0.041 4.041 21 N -0.148 5.148 22 N -0.045 5.045 23 N -0.074 5.074 24 H 0.330 0.670 25 N -0.153 5.153 26 C 0.044 3.956 27 N -0.266 5.266 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.274 0.726 36 H 0.288 0.712 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 32.661 -12.854 0.071 35.099 hybrid contribution 1.019 0.685 -0.019 1.228 sum 33.680 -12.169 0.052 35.811 Atomic orbital electron populations 1.69922 1.06317 1.26826 1.51198 1.25050 0.94746 0.99166 0.94653 0.86763 0.80330 0.83627 0.78436 1.20336 1.21447 1.18995 1.21143 0.89462 0.94570 1.50643 0.90921 1.19610 0.97386 0.91927 0.96284 1.21305 0.88556 0.99872 1.02785 1.21857 1.00795 0.89977 1.04473 1.21610 0.79415 0.93510 0.75382 1.90718 1.54651 1.46353 1.49317 1.45299 1.07569 0.97233 1.77446 1.43376 1.02287 0.99034 1.78693 1.18422 0.83728 0.89782 0.89488 1.21107 0.96454 0.95329 1.13050 1.21263 0.91301 0.99176 0.89189 1.17850 0.85653 0.95489 1.16381 1.23386 0.95319 0.84828 1.00584 1.76080 0.96564 1.23713 1.18418 1.78906 1.12869 0.98097 1.14615 1.47702 1.09348 1.04174 1.46177 0.67040 1.74921 0.91411 1.25997 1.22950 1.22463 0.89681 0.95273 0.88176 1.67149 1.03486 1.33485 1.22519 0.92770 0.96512 0.96937 0.91889 0.91858 0.88666 0.88671 0.72590 0.71161 0.83784 0.83327 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.09 -1.71 4.44 -26.73 -0.12 -1.83 16 11 C -0.13 -1.85 5.70 -27.88 -0.16 -2.01 16 12 C 0.51 7.35 7.95 -10.99 -0.09 7.26 16 13 O -0.54 -9.62 15.82 5.56 0.09 -9.53 16 14 N -0.53 -5.98 6.29 31.22 0.20 -5.79 16 15 N -0.51 -5.26 6.41 31.14 0.20 -5.06 16 16 C 0.42 3.96 7.59 -155.04 -1.18 2.79 16 17 C -0.23 -1.69 9.92 -39.28 -0.39 -2.08 16 18 C 0.02 0.13 9.82 -39.01 -0.38 -0.25 16 19 C -0.14 -1.16 5.89 -104.73 -0.62 -1.78 16 20 C 0.24 2.02 7.95 -156.29 -1.24 0.78 16 21 N -0.27 -2.52 12.30 32.15 0.40 -2.12 16 22 N -0.05 -0.38 13.47 60.35 0.81 0.44 16 23 N -0.23 -1.12 7.90 60.35 0.48 -0.64 16 24 H 0.48 0.08 8.96 -340.36 -3.05 -2.97 16 25 N -0.30 -2.14 12.10 32.17 0.39 -1.76 16 26 C 0.21 1.68 10.86 -17.23 -0.19 1.49 16 27 N -0.55 -5.24 9.34 -12.19 -0.11 -5.36 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 31 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.43 4.19 7.94 -182.59 -1.45 2.74 16 36 H 0.44 4.36 7.99 -182.59 -1.46 2.91 16 37 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 38 H 0.15 0.85 7.96 -52.48 -0.42 0.43 16 39 H 0.17 1.07 7.88 -52.49 -0.41 0.66 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -36.46 347.45 -10.37 -46.83 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -9.25 Total: -2.19 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -4.90 Total: -9.56 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 3.13 Total: -47.58 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.46 -10.37 -46.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606348120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.406 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds