Wall clock time and date at job start Tue Mar 31 2020 11:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48502 * 109.47189 * 269.99642 * 3 2 1 5 5 H 1.48503 * 109.47255 * 29.99685 * 3 2 1 6 6 H 1.48499 * 109.47130 * 150.00084 * 3 2 1 7 7 C 1.37875 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46936 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 O 1.21273 * 119.99801 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99496 * 179.97438 * 12 11 10 15 15 N 1.40109 * 119.99481 * 180.02562 * 14 12 11 16 16 C 1.38914 * 119.99643 * 180.27884 * 15 14 12 17 17 C 1.39235 * 119.57709 * 179.44617 * 16 15 14 18 18 C 1.38061 * 119.21867 * 179.74818 * 17 16 15 19 19 C 1.39942 * 118.40294 * 0.51536 * 18 17 16 20 20 C 1.48432 * 120.45172 * 179.77557 * 19 18 17 21 21 N 1.34067 * 126.67296 * 359.66213 * 20 19 18 22 22 N 1.28987 * 107.26310 * 179.84234 * 21 20 19 23 23 N 1.28730 * 108.94806 * 0.42845 * 22 21 20 24 24 H 0.97002 * 125.33846 * 179.70364 * 23 22 21 25 25 N 1.28869 * 109.32194 * 359.73220 * 23 22 21 26 26 C 1.39122 * 119.09709 * 359.74709 * 19 18 17 27 27 N 1.31812 * 120.69307 * 359.97438 * 26 19 18 28 28 H 0.97001 * 119.99847 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 30 30 H 1.08998 * 109.46706 * 300.00155 * 9 7 2 31 31 H 1.09003 * 109.47201 * 60.00605 * 10 9 7 32 32 H 1.08998 * 109.47770 * 299.99773 * 10 9 7 33 33 H 1.09000 * 109.46887 * 59.99725 * 11 10 9 34 34 H 1.09007 * 109.46700 * 300.00268 * 11 10 9 35 35 H 0.97000 * 120.00718 * 0.02562 * 14 12 11 36 36 H 0.97001 * 119.99794 * 359.97438 * 15 14 12 37 37 H 1.08006 * 120.39042 * 0.02562 * 17 16 15 38 38 H 1.08004 * 120.79830 * 180.24501 * 18 17 16 39 39 H 1.08001 * 119.65291 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6364 0.0022 12 6 6.0540 -4.0573 0.0027 13 8 5.2659 -4.9790 0.0026 14 7 7.3791 -4.3034 0.0023 15 7 7.8461 -5.6243 0.0022 16 6 9.2119 -5.8781 0.0076 17 6 9.6664 -7.1941 0.0192 18 6 11.0253 -7.4378 0.0191 19 6 11.8978 -6.3437 0.0184 20 6 13.3672 -6.5533 0.0234 21 7 14.0080 -7.7309 0.0351 22 7 15.2729 -7.4784 0.0322 23 7 15.4445 -6.2026 0.0283 24 1 16.3035 -5.7520 0.0296 25 7 14.2961 -5.6179 0.0230 26 6 11.3692 -5.0568 0.0124 27 7 10.0651 -4.8652 0.0069 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8888 31 1 3.6587 -3.1509 -0.8876 32 1 3.6580 -3.1498 0.8924 33 1 5.9150 -2.1218 0.8918 34 1 5.9149 -2.1233 -0.8882 35 1 8.0094 -3.5661 0.0020 36 1 7.2158 -6.3616 0.0029 37 1 8.9641 -8.0147 0.0236 38 1 11.4058 -8.4486 0.0240 39 1 12.0343 -4.2060 0.0123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606348120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:49 Heat of formation + Delta-G solvation = 125.113751 kcal Electronic energy + Delta-G solvation = -23851.694437 eV Core-core repulsion = 20025.412121 eV Total energy + Delta-G solvation = -3826.282316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.38684 -41.51507 -40.64675 -37.38299 -36.09456 -35.41114 -34.67719 -34.16141 -33.47286 -32.82585 -30.59643 -29.30969 -26.02333 -25.81867 -25.14268 -24.10265 -22.97142 -22.31709 -21.47846 -20.17395 -19.56949 -18.78604 -18.67353 -18.07738 -17.50004 -17.23397 -16.89879 -16.59941 -16.19476 -15.70211 -15.33551 -15.05027 -15.01930 -14.90602 -14.72004 -14.21693 -13.80999 -13.57935 -13.41963 -13.21303 -13.06198 -12.69887 -12.48088 -12.33921 -12.12051 -12.00657 -11.78819 -11.72537 -11.46419 -11.30533 -11.09174 -10.82836 -10.72228 -10.66177 -10.32966 -8.52364 -8.25125 -6.30530 -0.30315 0.21087 0.28873 0.86024 1.30524 1.41289 1.44430 1.48972 1.56398 1.58087 2.41477 2.61730 2.83012 2.83495 3.10369 3.20317 3.56534 3.82131 3.93442 4.00603 4.15310 4.25481 4.27655 4.35554 4.52989 4.75338 4.76945 4.93799 4.98023 5.00208 5.07450 5.15363 5.32527 5.59291 5.63793 5.66574 5.69134 5.74272 6.07710 6.33422 6.47058 6.78554 6.92786 7.18141 7.29484 7.33923 8.92348 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.033245 B = 0.001763 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.036254 B =15878.328178 C =16694.591000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.539 4.539 8 H 0.020 0.980 9 C -0.011 4.011 10 C -0.080 4.080 11 C -0.120 4.120 12 C 0.515 3.485 13 O -0.582 6.582 14 N -0.510 5.510 15 N -0.516 5.516 16 C 0.408 3.592 17 C -0.225 4.225 18 C 0.018 3.982 19 C -0.143 4.143 20 C 0.227 3.773 21 N -0.297 5.297 22 N -0.059 5.059 23 N -0.202 5.202 24 H 0.494 0.506 25 N -0.301 5.301 26 C 0.200 3.800 27 N -0.560 5.560 28 H 0.265 0.735 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.441 0.559 36 H 0.444 0.556 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.161 -11.702 0.078 38.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.200 4.200 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.156 1.156 7 C -0.577 4.577 8 H 0.039 0.961 9 C -0.048 4.048 10 C -0.119 4.119 11 C -0.160 4.160 12 C 0.303 3.697 13 O -0.460 6.460 14 N -0.258 5.258 15 N -0.244 5.244 16 C 0.172 3.828 17 C -0.251 4.251 18 C -0.010 4.010 19 C -0.152 4.152 20 C -0.053 4.053 21 N -0.169 5.169 22 N -0.054 5.054 23 N -0.053 5.053 24 H 0.352 0.648 25 N -0.153 5.153 26 C 0.039 3.961 27 N -0.279 5.279 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.286 0.714 36 H 0.289 0.711 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 36.590 -11.605 0.081 38.386 hybrid contribution -0.063 0.179 -0.023 0.191 sum 36.527 -11.425 0.057 38.272 Atomic orbital electron populations 1.70109 1.08698 1.28202 1.52807 1.26188 0.95718 1.04100 0.93952 0.85517 0.79762 0.77135 0.79340 1.19002 1.21460 1.15642 1.21572 0.92784 0.92819 1.50534 0.96135 1.19562 0.93387 0.94350 0.97548 1.21058 0.92878 0.97262 1.00688 1.21679 0.96404 0.90656 1.07309 1.21473 0.79992 0.93049 0.75166 1.90709 1.55964 1.47510 1.51840 1.44970 1.06811 0.98373 1.75665 1.43440 1.02768 0.98256 1.79935 1.18625 0.83233 0.90591 0.90363 1.21333 0.96897 0.95179 1.11649 1.21468 0.91119 0.99731 0.88647 1.17978 0.85789 0.95794 1.15669 1.23473 0.95640 0.84937 1.01247 1.76058 0.97130 1.24351 1.19386 1.78856 1.12436 0.98993 1.15119 1.47773 1.09820 1.03591 1.44080 0.64759 1.74890 0.91789 1.25912 1.22724 1.22666 0.89384 0.95872 0.88190 1.67113 1.04034 1.33920 1.22827 0.92597 0.94932 0.95057 0.94152 0.94147 0.85804 0.85750 0.71430 0.71109 0.81678 0.81932 0.80204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.37 13.96 21.45 0.30 -61.07 16 2 C 0.00 -0.22 5.47 84.65 0.46 0.24 16 3 Si 0.96 43.32 27.47 68.60 1.88 45.21 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.23 -9.30 6.54 99.48 0.65 -8.65 16 7 C -0.54 -31.83 9.66 25.60 0.25 -31.58 16 8 H 0.02 1.36 7.99 -2.91 -0.02 1.34 16 9 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 10 C -0.08 -3.17 4.44 30.59 0.14 -3.03 16 11 C -0.12 -3.12 5.70 29.85 0.17 -2.95 16 12 C 0.52 14.18 7.95 87.66 0.70 14.87 16 13 O -0.58 -21.16 15.82 -3.01 -0.05 -21.21 16 14 N -0.51 -10.73 6.29 -173.54 -1.09 -11.82 16 15 N -0.52 -10.08 6.41 -55.41 -0.36 -10.44 16 16 C 0.41 7.00 7.59 133.11 1.01 8.01 16 17 C -0.22 -2.87 9.92 22.47 0.22 -2.65 16 18 C 0.02 0.22 9.82 22.64 0.22 0.44 16 19 C -0.14 -2.07 5.89 -19.94 -0.12 -2.19 16 20 C 0.23 3.48 7.95 137.36 1.09 4.57 16 21 N -0.30 -5.02 12.30 -52.19 -0.64 -5.66 16 22 N -0.06 -0.80 13.47 37.02 0.50 -0.30 16 23 N -0.20 -1.57 7.90 37.02 0.29 -1.28 16 24 H 0.49 -0.96 8.96 -347.53 -3.12 -4.08 16 25 N -0.30 -3.68 12.10 -52.13 -0.63 -4.31 16 26 C 0.20 2.90 10.86 84.91 0.92 3.82 16 27 N -0.56 -9.74 9.34 -192.47 -1.80 -11.54 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 30 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 31 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.12 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.44 7.47 7.94 -213.31 -1.69 5.78 16 36 H 0.44 8.49 7.99 -213.31 -1.70 6.79 16 37 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.16 1.55 7.96 -2.91 -0.02 1.53 16 39 H 0.18 1.97 7.88 -2.91 -0.02 1.94 16 Total: -1.00 -82.21 347.45 -1.83 -84.04 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.43 Total: 9.19 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.19 Total: -10.81 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.43 Total: -106.42 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -82.21 -1.83 -84.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606348120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.152 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds