Wall clock time and date at job start Tue Mar 31 2020 11:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38099 * 119.92903 * 2 1 4 4 C 1.38044 * 120.31240 * 180.25935 * 3 2 1 5 5 C 1.39777 * 120.14755 * 359.47961 * 4 3 2 6 6 C 1.47743 * 120.07795 * 180.28254 * 5 4 3 7 7 O 1.21595 * 119.99802 * 210.68624 * 6 5 4 8 8 N 1.34771 * 120.00056 * 30.67900 * 6 5 4 9 9 C 1.36873 * 119.99930 * 6.33815 * 8 6 5 10 10 H 1.07999 * 119.99823 * 233.30474 * 9 8 6 11 11 C 1.39043 * 120.00305 * 53.30210 * 9 8 6 12 12 N 1.31358 * 120.00162 * 7.09879 * 11 9 8 13 13 Si 1.86800 * 120.00278 * 187.09763 * 11 9 8 14 14 H 1.48497 * 109.47109 * 90.00054 * 13 11 9 15 15 H 1.48504 * 109.47450 * 210.00363 * 13 11 9 16 16 H 1.48506 * 109.47195 * 330.00497 * 13 11 9 17 17 C 1.46496 * 120.00181 * 186.33110 * 8 6 5 18 18 C 1.54266 * 110.03564 * 233.46832 * 17 8 6 19 19 C 1.54962 * 104.16323 * 217.13823 * 18 17 8 20 20 C 1.54889 * 102.77794 * 37.88540 * 19 18 17 21 21 C 1.53871 * 110.03224 * 116.25011 * 17 8 6 22 22 C 1.39360 * 119.84633 * 0.26033 * 5 4 3 23 23 C 1.39374 * 119.69328 * 359.97438 * 22 5 4 24 24 C 1.47744 * 120.07421 * 180.02562 * 23 22 5 25 25 O 1.21471 * 119.99755 * 180.08728 * 24 23 22 26 26 O 1.34711 * 119.99746 * 0.08449 * 24 23 22 27 27 H 1.08990 * 109.47383 * 264.20610 * 1 2 3 28 28 H 1.09004 * 109.47184 * 24.20761 * 1 2 3 29 29 H 1.09006 * 109.47087 * 144.19693 * 1 2 3 30 30 H 1.08001 * 119.84253 * 359.97438 * 3 2 1 31 31 H 1.07994 * 119.92338 * 179.76520 * 4 3 2 32 32 H 0.97003 * 120.00612 * 184.98925 * 12 11 9 33 33 H 1.09004 * 110.01914 * 354.85460 * 17 8 6 34 34 H 1.09005 * 110.48503 * 335.78719 * 18 17 8 35 35 H 1.09000 * 110.49041 * 98.42538 * 18 17 8 36 36 H 1.09001 * 110.71880 * 279.57094 * 19 18 17 37 37 H 1.08998 * 110.92738 * 156.29730 * 19 18 17 38 38 H 1.08997 * 110.48741 * 203.41171 * 20 19 18 39 39 H 1.08995 * 110.59671 * 80.82063 * 20 19 18 40 40 H 1.08995 * 110.03176 * 238.56806 * 21 17 8 41 41 H 1.08997 * 110.03570 * 359.95078 * 21 17 8 42 42 H 1.08001 * 120.15373 * 179.97438 * 22 5 4 43 43 H 0.96705 * 116.99015 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1968 0.0000 4 6 3.5764 1.2061 -0.0054 5 6 4.2865 0.0021 0.0001 6 6 5.7639 0.0139 0.0006 7 8 6.3792 -0.8892 -0.5327 8 7 6.4295 1.0255 0.5920 9 6 5.7436 1.9728 1.3031 10 1 5.8788 3.0202 1.0775 11 6 4.8729 1.5865 2.3160 12 7 4.8119 0.3273 2.6850 13 14 3.7899 2.8582 3.1522 14 1 2.5001 2.9656 2.4241 15 1 3.5334 2.4446 4.5552 16 1 4.4751 4.1757 3.1420 17 6 7.8872 1.1113 0.4739 18 6 8.5254 1.2202 1.8741 19 6 9.7134 2.1950 1.6745 20 6 9.1429 3.2297 0.6729 21 6 8.2799 2.3881 -0.2898 22 6 3.5977 -1.2093 0.0055 23 6 2.2039 -1.2111 0.0060 24 6 1.4652 -2.4905 0.0123 25 8 0.2505 -2.4904 0.0111 26 8 2.1387 -3.6571 0.0193 27 1 -0.3633 -0.1037 1.0223 28 1 -0.3634 0.9373 -0.4214 29 1 -0.3633 -0.8335 -0.6012 30 1 1.6523 2.1300 -0.0004 31 1 4.1088 2.1456 -0.0092 32 1 4.1543 0.0450 3.3399 33 1 8.2719 0.2329 -0.0445 34 1 7.8112 1.6305 2.5880 35 1 8.8824 0.2458 2.2075 36 1 10.5709 1.6755 1.2469 37 1 9.9844 2.6760 2.6144 38 1 9.9507 3.7210 0.1305 39 1 8.5289 3.9664 1.1907 40 1 8.8558 2.1295 -1.1783 41 1 7.3859 2.9435 -0.5733 42 1 4.1413 -2.1425 0.0093 43 1 1.6119 -4.4681 0.0237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607725889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:13 Heat of formation + Delta-G solvation = -100.181536 kcal Electronic energy + Delta-G solvation = -27681.620026 eV Core-core repulsion = 23884.523014 eV Total energy + Delta-G solvation = -3797.097012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.20360 -39.29853 -37.85094 -36.53147 -35.79856 -34.34933 -31.97489 -31.39488 -30.73618 -28.02221 -27.60191 -26.56011 -24.89996 -23.72902 -21.91560 -21.20596 -20.08102 -19.51908 -19.36920 -17.87711 -17.31797 -15.96211 -15.91070 -15.36401 -15.09239 -14.96180 -14.76486 -14.42646 -14.32061 -13.73884 -13.31398 -13.19295 -13.05814 -12.86061 -12.69836 -12.52696 -11.91540 -11.77858 -11.55485 -11.25786 -11.22691 -11.19303 -10.94813 -10.83207 -10.79510 -10.64232 -10.56354 -10.44987 -10.42375 -10.06624 -9.74600 -9.71917 -9.12510 -8.60578 -8.30840 -7.85582 -7.33907 -6.45381 -4.30257 1.28181 1.88356 2.94029 3.08211 3.13969 3.17098 3.38646 3.88779 4.01771 4.52593 4.80156 4.95792 5.29202 5.30170 5.34139 5.34871 5.48578 5.57740 5.78235 5.91966 6.02218 6.03804 6.14281 6.17052 6.22730 6.25136 6.25797 6.28073 6.35646 6.44374 6.47365 6.55327 6.59986 6.65373 6.81077 6.85487 6.91827 7.03167 7.07984 7.20535 7.27839 7.33427 7.52833 7.86600 8.22287 8.54727 8.83260 9.46722 9.89977 10.57720 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.005070 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.871042 B = 5521.606642 C = 6395.743168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.017 4.017 3 C -0.164 4.164 4 C -0.016 4.016 5 C -0.072 4.072 6 C 0.558 3.442 7 O -0.602 6.602 8 N -0.443 5.443 9 C -0.348 4.348 10 H 0.085 0.915 11 C 0.059 3.941 12 N -0.845 5.845 13 Si 0.894 3.106 14 H -0.265 1.265 15 H -0.283 1.283 16 H -0.267 1.267 17 C 0.134 3.866 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.008 4.008 23 C -0.162 4.162 24 C 0.533 3.467 25 O -0.526 6.526 26 O -0.510 6.510 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.154 0.846 32 H 0.273 0.727 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.133 0.867 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.736 2.231 -2.801 3.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.018 4.018 3 C -0.182 4.182 4 C -0.034 4.034 5 C -0.075 4.075 6 C 0.348 3.652 7 O -0.488 6.488 8 N -0.162 5.162 9 C -0.476 4.476 10 H 0.102 0.898 11 C -0.151 4.151 12 N -0.478 5.478 13 Si 0.719 3.281 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.192 1.192 17 C 0.030 3.970 18 C -0.158 4.158 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.166 4.166 22 C -0.027 4.027 23 C -0.163 4.163 24 C 0.381 3.619 25 O -0.418 6.418 26 O -0.321 6.321 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.140 0.860 31 H 0.172 0.828 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.151 0.849 43 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.528 2.036 -2.860 3.829 hybrid contribution -0.953 0.019 0.990 1.374 sum -2.481 2.055 -1.870 3.725 Atomic orbital electron populations 1.21153 0.90949 1.02905 1.03021 1.19921 0.95947 0.91520 0.94391 1.20902 0.94552 0.96621 1.06165 1.22179 0.93007 0.99851 0.88403 1.19606 0.94355 0.92646 1.00929 1.18102 0.86519 0.82606 0.77963 1.90601 1.69705 1.37948 1.50536 1.43140 1.03226 1.24458 1.45327 1.19063 1.25015 0.89183 1.14297 0.89757 1.25586 0.98507 0.96264 0.94722 1.69796 1.32429 1.15548 1.30020 0.86447 0.81125 0.81131 0.79399 1.19007 1.20796 1.19179 1.21585 0.83328 0.96841 0.95250 1.22569 0.96571 0.98180 0.98518 1.22451 0.97831 0.97262 0.98540 1.22255 0.98304 0.97694 0.97151 1.22435 0.99533 0.97113 0.97541 1.21310 0.91692 0.98551 0.91140 1.18552 0.93305 0.89229 1.15253 1.21070 0.85336 0.84247 0.71278 1.90752 1.15159 1.87780 1.48109 1.84664 1.44827 1.16738 1.85878 0.91336 0.92552 0.88786 0.85964 0.82836 0.91672 0.90274 0.89279 0.92992 0.92489 0.92403 0.92929 0.91698 0.92801 0.91159 0.84923 0.73660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.84 36.00 0.32 -1.62 16 2 C -0.02 -0.31 5.92 -104.12 -0.62 -0.93 16 3 C -0.16 -2.99 9.64 -39.70 -0.38 -3.37 16 4 C -0.02 -0.33 6.58 -39.08 -0.26 -0.58 16 5 C -0.07 -1.63 3.87 -105.02 -0.41 -2.04 16 6 C 0.56 13.78 6.66 -12.38 -0.08 13.70 16 7 O -0.60 -16.22 16.09 5.28 0.08 -16.13 16 8 N -0.44 -10.18 2.36 -107.65 -0.25 -10.43 16 9 C -0.35 -7.78 4.46 -15.00 -0.07 -7.85 16 10 H 0.08 1.82 7.42 -52.49 -0.39 1.43 16 11 C 0.06 1.36 3.19 -17.46 -0.06 1.30 16 12 N -0.85 -21.11 11.55 55.50 0.64 -20.47 16 13 Si 0.89 18.14 28.93 -169.99 -4.92 13.23 16 14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 16 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 17 C 0.13 2.77 3.29 -66.82 -0.22 2.55 16 18 C -0.12 -2.31 6.40 -25.03 -0.16 -2.47 16 19 C -0.12 -1.88 6.91 -24.70 -0.17 -2.06 16 20 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 21 C -0.13 -2.20 6.30 -25.61 -0.16 -2.37 16 22 C -0.01 -0.16 9.16 -38.74 -0.35 -0.52 16 23 C -0.16 -3.14 5.87 -105.03 -0.62 -3.76 16 24 C 0.53 9.35 8.24 34.62 0.29 9.63 16 25 O -0.53 -9.47 13.99 -19.24 -0.27 -9.74 16 26 O -0.51 -7.56 12.67 -40.52 -0.51 -8.08 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 29 H 0.09 1.52 5.60 -51.93 -0.29 1.23 16 30 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.15 3.05 5.68 -52.49 -0.30 2.75 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.08 1.76 6.96 -51.93 -0.36 1.40 16 34 H 0.09 1.92 6.86 -51.93 -0.36 1.57 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.26 7.22 -51.93 -0.38 0.89 16 42 H 0.13 2.93 7.48 -52.49 -0.39 2.54 16 43 H 0.41 3.73 9.11 45.56 0.42 4.15 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -28.47 346.80 -8.10 -36.57 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.98 Total: 12.12 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -3.12 Total: -2.29 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.39 Total: -30.90 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.70 Total: -33.95 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -4.92 Total: 13.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.47 -8.10 -36.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607725889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.611 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds