Wall clock time and date at job start Tue Mar 31 2020 11:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38099 * 119.92903 * 2 1 4 4 C 1.38044 * 120.31240 * 180.25935 * 3 2 1 5 5 C 1.39777 * 120.14755 * 359.47961 * 4 3 2 6 6 C 1.47743 * 120.07795 * 180.28254 * 5 4 3 7 7 O 1.21595 * 119.99802 * 210.68624 * 6 5 4 8 8 N 1.34771 * 120.00056 * 30.67900 * 6 5 4 9 9 C 1.36873 * 119.99930 * 6.33815 * 8 6 5 10 10 H 1.07999 * 119.99823 * 233.30474 * 9 8 6 11 11 C 1.39043 * 120.00305 * 53.30210 * 9 8 6 12 12 N 1.31358 * 120.00162 * 7.09879 * 11 9 8 13 13 Si 1.86800 * 120.00278 * 187.09763 * 11 9 8 14 14 H 1.48497 * 109.47109 * 90.00054 * 13 11 9 15 15 H 1.48504 * 109.47450 * 210.00363 * 13 11 9 16 16 H 1.48506 * 109.47195 * 330.00497 * 13 11 9 17 17 C 1.46496 * 120.00181 * 186.33110 * 8 6 5 18 18 C 1.54266 * 110.03564 * 233.46832 * 17 8 6 19 19 C 1.54962 * 104.16323 * 217.13823 * 18 17 8 20 20 C 1.54889 * 102.77794 * 37.88540 * 19 18 17 21 21 C 1.53871 * 110.03224 * 116.25011 * 17 8 6 22 22 C 1.39360 * 119.84633 * 0.26033 * 5 4 3 23 23 C 1.39374 * 119.69328 * 359.97438 * 22 5 4 24 24 C 1.47744 * 120.07421 * 180.02562 * 23 22 5 25 25 O 1.21471 * 119.99755 * 180.08728 * 24 23 22 26 26 O 1.34711 * 119.99746 * 0.08449 * 24 23 22 27 27 H 1.08990 * 109.47383 * 264.20610 * 1 2 3 28 28 H 1.09004 * 109.47184 * 24.20761 * 1 2 3 29 29 H 1.09006 * 109.47087 * 144.19693 * 1 2 3 30 30 H 1.08001 * 119.84253 * 359.97438 * 3 2 1 31 31 H 1.07994 * 119.92338 * 179.76520 * 4 3 2 32 32 H 0.97003 * 120.00612 * 184.98925 * 12 11 9 33 33 H 1.09004 * 110.01914 * 354.85460 * 17 8 6 34 34 H 1.09005 * 110.48503 * 335.78719 * 18 17 8 35 35 H 1.09000 * 110.49041 * 98.42538 * 18 17 8 36 36 H 1.09001 * 110.71880 * 279.57094 * 19 18 17 37 37 H 1.08998 * 110.92738 * 156.29730 * 19 18 17 38 38 H 1.08997 * 110.48741 * 203.41171 * 20 19 18 39 39 H 1.08995 * 110.59671 * 80.82063 * 20 19 18 40 40 H 1.08995 * 110.03176 * 238.56806 * 21 17 8 41 41 H 1.08997 * 110.03570 * 359.95078 * 21 17 8 42 42 H 1.08001 * 120.15373 * 179.97438 * 22 5 4 43 43 H 0.96705 * 116.99015 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1968 0.0000 4 6 3.5764 1.2061 -0.0054 5 6 4.2865 0.0021 0.0001 6 6 5.7639 0.0139 0.0006 7 8 6.3792 -0.8892 -0.5327 8 7 6.4295 1.0255 0.5920 9 6 5.7436 1.9728 1.3031 10 1 5.8788 3.0202 1.0775 11 6 4.8729 1.5865 2.3160 12 7 4.8119 0.3273 2.6850 13 14 3.7899 2.8582 3.1522 14 1 2.5001 2.9656 2.4241 15 1 3.5334 2.4446 4.5552 16 1 4.4751 4.1757 3.1420 17 6 7.8872 1.1113 0.4739 18 6 8.5254 1.2202 1.8741 19 6 9.7134 2.1950 1.6745 20 6 9.1429 3.2297 0.6729 21 6 8.2799 2.3881 -0.2898 22 6 3.5977 -1.2093 0.0055 23 6 2.2039 -1.2111 0.0060 24 6 1.4652 -2.4905 0.0123 25 8 0.2505 -2.4904 0.0111 26 8 2.1387 -3.6571 0.0193 27 1 -0.3633 -0.1037 1.0223 28 1 -0.3634 0.9373 -0.4214 29 1 -0.3633 -0.8335 -0.6012 30 1 1.6523 2.1300 -0.0004 31 1 4.1088 2.1456 -0.0092 32 1 4.1543 0.0450 3.3399 33 1 8.2719 0.2329 -0.0445 34 1 7.8112 1.6305 2.5880 35 1 8.8824 0.2458 2.2075 36 1 10.5709 1.6755 1.2469 37 1 9.9844 2.6760 2.6144 38 1 9.9507 3.7210 0.1305 39 1 8.5289 3.9664 1.1907 40 1 8.8558 2.1295 -1.1783 41 1 7.3859 2.9435 -0.5733 42 1 4.1413 -2.1425 0.0093 43 1 1.6119 -4.4681 0.0237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607725889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:12 Heat of formation + Delta-G solvation = -115.822460 kcal Electronic energy + Delta-G solvation = -27682.298267 eV Core-core repulsion = 23884.523014 eV Total energy + Delta-G solvation = -3797.775253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65960 -40.93024 -39.33046 -38.15417 -37.14473 -36.08936 -33.47367 -33.14592 -32.25538 -29.44848 -29.08294 -28.07418 -26.63759 -25.19026 -23.43877 -22.71190 -21.46612 -21.16103 -20.94913 -19.32560 -18.79845 -17.62024 -17.55735 -16.74883 -16.70052 -16.52242 -16.29964 -15.98657 -15.80798 -15.24516 -15.01510 -14.64117 -14.43778 -14.29629 -14.13193 -14.11698 -13.39670 -13.28442 -13.10492 -12.92529 -12.67353 -12.55174 -12.50486 -12.37289 -12.35238 -12.21494 -12.05504 -11.86230 -11.81356 -11.40665 -11.29853 -11.10698 -10.84826 -10.44870 -9.84022 -9.50813 -9.10436 -8.23317 -6.12662 -0.21263 0.29802 1.41974 1.50022 1.55549 1.57463 2.11071 2.19711 2.35043 2.85893 3.08681 3.26276 3.87660 3.87984 3.92869 3.95467 4.15743 4.19988 4.32943 4.41311 4.61028 4.62722 4.71502 4.80656 4.82261 4.84003 4.84840 4.90317 4.94283 5.05564 5.09449 5.15635 5.19422 5.27093 5.37766 5.43617 5.52834 5.55394 5.56718 5.63941 5.65085 5.70235 5.99759 6.10108 6.72310 7.00510 7.05145 7.62515 8.08881 8.79599 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.005070 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.871042 B = 5521.606642 C = 6395.743168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.016 4.016 3 C -0.157 4.157 4 C -0.020 4.020 5 C -0.095 4.095 6 C 0.537 3.463 7 O -0.644 6.644 8 N -0.443 5.443 9 C -0.345 4.345 10 H 0.096 0.904 11 C 0.032 3.968 12 N -0.880 5.880 13 Si 0.942 3.058 14 H -0.246 1.246 15 H -0.299 1.299 16 H -0.255 1.255 17 C 0.120 3.880 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.023 4.023 23 C -0.170 4.170 24 C 0.537 3.463 25 O -0.529 6.529 26 O -0.511 6.511 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.266 0.734 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 4.687 -2.788 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.017 4.017 3 C -0.175 4.175 4 C -0.039 4.039 5 C -0.098 4.098 6 C 0.329 3.671 7 O -0.533 6.533 8 N -0.160 5.160 9 C -0.473 4.473 10 H 0.114 0.886 11 C -0.175 4.175 12 N -0.514 5.514 13 Si 0.766 3.234 14 H -0.170 1.170 15 H -0.226 1.226 16 H -0.179 1.179 17 C 0.017 3.983 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.145 4.145 21 C -0.159 4.159 22 C -0.042 4.042 23 C -0.171 4.171 24 C 0.384 3.616 25 O -0.422 6.422 26 O -0.325 6.325 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.175 0.825 31 H 0.173 0.827 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -2.585 4.510 -2.855 5.931 hybrid contribution -0.602 -0.846 0.976 1.425 sum -3.187 3.664 -1.879 5.207 Atomic orbital electron populations 1.21159 0.88576 1.04386 1.03317 1.20329 0.97583 0.90971 0.92771 1.21254 0.93663 0.98088 1.04470 1.22172 0.94045 0.98821 0.88813 1.19569 0.93266 0.94028 1.02934 1.18656 0.87826 0.82687 0.77931 1.90543 1.70752 1.39513 1.52533 1.43365 1.04244 1.24002 1.44406 1.19285 1.24845 0.89327 1.13795 0.88620 1.26157 0.99241 0.97225 0.94863 1.69947 1.33099 1.17594 1.30751 0.85690 0.80610 0.79562 0.77580 1.17032 1.22568 1.17854 1.21831 0.82313 0.97729 0.96461 1.22481 0.97749 0.98525 0.96809 1.22420 0.96383 0.96346 0.99816 1.22230 0.98688 0.97093 0.96487 1.22365 0.99921 0.95444 0.98193 1.21188 0.92796 0.97567 0.92676 1.18801 0.92524 0.91090 1.14688 1.20750 0.85043 0.84470 0.71296 1.90750 1.15046 1.88045 1.48390 1.84619 1.45299 1.17318 1.85237 0.90970 0.89540 0.89319 0.82476 0.82719 0.92417 0.92950 0.91749 0.94511 0.90905 0.90563 0.89735 0.91711 0.91562 0.91896 0.86993 0.70787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 8.84 71.23 0.63 -2.69 16 2 C -0.02 -0.55 5.92 -19.54 -0.12 -0.66 16 3 C -0.16 -5.33 9.64 22.19 0.21 -5.12 16 4 C -0.02 -0.81 6.58 22.60 0.15 -0.66 16 5 C -0.10 -4.42 3.87 -20.12 -0.08 -4.50 16 6 C 0.54 27.95 6.66 86.76 0.58 28.53 16 7 O -0.64 -37.12 16.09 -4.02 -0.06 -37.19 16 8 N -0.44 -21.04 2.36 -612.74 -1.44 -22.48 16 9 C -0.35 -15.49 4.46 84.10 0.38 -15.11 16 10 H 0.10 4.04 7.42 -2.91 -0.02 4.01 16 11 C 0.03 1.45 3.19 84.96 0.27 1.72 16 12 N -0.88 -45.12 11.55 21.68 0.25 -44.87 16 13 Si 0.94 35.96 28.93 68.60 1.98 37.95 16 14 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 15 H -0.30 -12.22 7.11 99.48 0.71 -11.52 16 16 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 17 C 0.12 5.11 3.29 45.72 0.15 5.26 16 18 C -0.12 -4.59 6.40 31.69 0.20 -4.39 16 19 C -0.11 -3.21 6.91 31.91 0.22 -2.99 16 20 C -0.11 -2.93 6.83 31.67 0.22 -2.71 16 21 C -0.12 -4.06 6.30 31.32 0.20 -3.87 16 22 C -0.02 -1.01 9.16 22.81 0.21 -0.80 16 23 C -0.17 -6.56 5.87 -20.13 -0.12 -6.67 16 24 C 0.54 18.50 8.24 70.34 0.58 19.08 16 25 O -0.53 -18.25 13.99 19.93 0.28 -17.97 16 26 O -0.51 -15.00 12.67 -56.21 -0.71 -15.71 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 1.91 8.04 -2.38 -0.02 1.89 16 29 H 0.09 2.64 5.60 -2.38 -0.01 2.62 16 30 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.16 6.02 5.68 -2.91 -0.02 6.00 16 32 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 33 H 0.05 2.47 6.96 -2.38 -0.02 2.45 16 34 H 0.06 2.83 6.86 -2.38 -0.02 2.82 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 2.20 7.22 -2.39 -0.02 2.18 16 42 H 0.11 5.32 7.48 -2.91 -0.02 5.30 16 43 H 0.43 7.43 9.11 -74.05 -0.67 6.75 16 Total: -1.00 -64.31 346.80 4.35 -59.96 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.37 Total: 35.89 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 3.68 Total: 4.43 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -1.19 Total: -67.35 kcal Atomic # 8 Polarization: -70.37 SS G_CDS: -0.50 Total: -70.87 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 1.98 Total: 37.95 kcal Total: -64.31 4.35 -59.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607725889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.860 kcal (2) G-P(sol) polarization free energy of solvation -64.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds