Wall clock time and date at job start Tue Mar 31 2020 10:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00215 * 2 1 4 4 H 1.48507 * 109.46912 * 269.99691 * 3 2 1 5 5 H 1.48496 * 109.47104 * 29.99396 * 3 2 1 6 6 H 1.48495 * 109.47082 * 149.99874 * 3 2 1 7 7 C 1.37876 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00401 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.53049 * 109.45950 * 179.97438 * 9 7 2 11 11 C 1.53189 * 109.31351 * 178.62586 * 10 9 7 12 12 N 1.46932 * 108.77411 * 54.63322 * 11 10 9 13 13 C 1.34778 * 120.62858 * 126.36987 * 12 11 10 14 14 O 1.21554 * 119.99782 * 3.78866 * 13 12 11 15 15 C 1.47842 * 120.00038 * 183.78348 * 13 12 11 16 16 C 1.39600 * 120.14698 * 309.45420 * 15 13 12 17 17 C 1.37932 * 119.85375 * 180.02562 * 16 15 13 18 18 C 1.38376 * 120.14466 * 359.72721 * 17 16 15 19 19 C 1.38330 * 120.29353 * 0.54556 * 18 17 16 20 20 C 1.50701 * 119.93064 * 179.72339 * 19 18 17 21 21 C 1.50696 * 109.47395 * 269.73301 * 20 19 18 22 22 O 1.20823 * 119.99816 * 359.97438 * 21 20 19 23 23 O 1.34235 * 120.00253 * 180.02562 * 21 20 19 24 24 C 1.37979 * 120.14557 * 359.45344 * 19 18 17 25 25 C 1.46927 * 118.73925 * 306.64018 * 12 11 10 26 26 C 1.52763 * 109.00521 * 53.31337 * 25 12 11 27 27 H 0.97004 * 119.99575 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46245 * 299.96813 * 9 7 2 29 29 H 1.08993 * 109.49731 * 58.67251 * 10 9 7 30 30 H 1.08998 * 109.49386 * 298.57755 * 10 9 7 31 31 H 1.09004 * 109.58651 * 294.84675 * 11 10 9 32 32 H 1.08997 * 109.70171 * 174.49246 * 11 10 9 33 33 H 1.08003 * 120.06572 * 359.97438 * 16 15 13 34 34 H 1.07999 * 119.92371 * 180.02562 * 17 16 15 35 35 H 1.08007 * 119.85226 * 180.29676 * 18 17 16 36 36 H 1.09003 * 109.47265 * 149.72693 * 20 19 18 37 37 H 1.09008 * 109.46792 * 29.73306 * 20 19 18 38 38 H 0.96696 * 116.99874 * 180.02562 * 23 21 20 39 39 H 1.07999 * 120.07471 * 180.24819 * 24 19 18 40 40 H 1.08996 * 109.58423 * 173.14452 * 25 12 11 41 41 H 1.09000 * 109.58703 * 293.57346 * 25 12 11 42 42 H 1.09004 * 109.55935 * 185.55299 * 26 25 12 43 43 H 1.08989 * 109.36139 * 65.49983 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2457 -3.6623 0.0005 11 6 1.4766 -4.9867 0.0352 12 7 0.5223 -5.0087 -1.0818 13 6 0.5120 -6.0344 -1.9561 14 8 1.2495 -6.9855 -1.7857 15 6 -0.3963 -6.0028 -3.1221 16 6 -1.7534 -5.7267 -2.9464 17 6 -2.5955 -5.6992 -4.0385 18 6 -2.0967 -5.9391 -5.3068 19 6 -0.7541 -6.2188 -5.4872 20 6 -0.2208 -6.4849 -6.8714 21 6 -0.3038 -7.9603 -7.1667 22 8 -0.7497 -8.7181 -6.3380 23 8 0.1187 -8.4328 -8.3500 24 6 0.0991 -6.2493 -4.4033 25 6 -0.4166 -3.8884 -1.2311 26 6 0.3701 -2.5790 -1.2484 27 1 -0.4850 0.8401 -0.0004 28 1 0.6244 -2.5567 0.8906 29 1 2.8881 -3.5916 0.8782 30 1 2.8556 -3.6193 -0.9018 31 1 0.9370 -5.0713 0.9785 32 1 2.1734 -5.8190 -0.0630 33 1 -2.1431 -5.5358 -1.9574 34 1 -3.6455 -5.4853 -3.9040 35 1 -2.7595 -5.9117 -6.1592 36 1 0.8182 -6.1606 -6.9290 37 1 -0.8143 -5.9343 -7.6014 38 1 0.0452 -9.3862 -8.4935 39 1 1.1479 -6.4639 -4.5459 40 1 -0.9668 -3.9949 -2.1660 41 1 -1.1136 -3.8817 -0.3931 42 1 -0.3225 -1.7373 -1.2595 43 1 0.9976 -2.5462 -2.1389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:08 Heat of formation + Delta-G solvation = -106.878494 kcal Electronic energy + Delta-G solvation = -26302.708197 eV Core-core repulsion = 22505.320783 eV Total energy + Delta-G solvation = -3797.387414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72841 -40.09252 -38.50580 -36.77667 -36.34956 -33.75996 -33.16730 -31.60566 -30.77619 -30.06922 -28.28956 -26.36249 -24.14906 -23.11295 -22.58577 -22.09137 -21.22877 -19.84966 -18.52826 -18.34510 -17.03318 -16.75264 -16.45793 -16.37272 -16.11676 -15.69970 -15.21561 -14.56711 -14.36595 -14.33972 -13.59873 -13.42302 -13.37068 -13.05068 -12.81719 -12.78483 -12.59397 -12.41748 -12.22982 -11.78318 -11.69208 -11.59041 -11.40160 -11.14503 -10.95540 -10.84448 -10.66700 -10.40807 -10.12843 -9.71650 -9.50933 -9.20866 -9.05107 -8.95913 -8.71592 -8.40074 -8.03173 -6.05346 -4.11307 0.98320 1.22846 1.96272 2.72484 3.02880 3.26589 3.33821 3.37068 3.38685 3.80137 4.29213 4.39070 4.56683 4.74024 4.95388 4.96537 5.07270 5.15164 5.22700 5.24466 5.44205 5.60458 5.71269 5.81076 5.87810 5.92614 6.05104 6.12264 6.21998 6.26609 6.30991 6.31815 6.34726 6.43416 6.63135 6.78380 6.87041 7.01563 7.11859 7.25723 7.62961 7.63880 7.86838 7.89565 8.01599 8.37913 8.48241 8.91963 9.53811 11.00168 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.003070 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.357857 B = 9119.701685 C = 9547.890129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.591 5.591 13 C 0.553 3.447 14 O -0.552 6.552 15 C -0.112 4.112 16 C -0.080 4.080 17 C -0.122 4.122 18 C -0.087 4.087 19 C -0.091 4.091 20 C -0.070 4.070 21 C 0.476 3.524 22 O -0.502 6.502 23 O -0.520 6.520 24 C -0.054 4.054 25 C 0.094 3.906 26 C -0.124 4.124 27 H 0.260 0.740 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.410 0.590 39 H 0.127 0.873 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 -11.397 -13.621 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.322 5.322 13 C 0.341 3.659 14 O -0.431 6.431 15 C -0.115 4.115 16 C -0.099 4.099 17 C -0.140 4.140 18 C -0.105 4.105 19 C -0.091 4.091 20 C -0.107 4.107 21 C 0.317 3.683 22 O -0.389 6.389 23 O -0.333 6.333 24 C -0.073 4.073 25 C -0.028 4.028 26 C -0.162 4.162 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.269 0.731 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.123 -11.534 -13.185 18.252 hybrid contribution 0.348 0.417 -0.090 0.550 sum -4.775 -11.117 -13.276 17.962 Atomic orbital electron populations 1.69836 1.05834 1.26455 1.50943 1.24956 0.94878 0.99046 0.95077 0.86615 0.79921 0.83516 0.78080 1.20739 1.21252 1.19971 1.21200 0.92945 0.90557 1.50261 0.92711 1.18645 0.92647 0.91722 0.94005 1.22013 0.98930 0.94144 1.01052 1.21740 0.91715 0.99795 0.87776 1.48192 1.35968 1.20650 1.27407 1.18332 0.82657 0.82597 0.82304 1.90741 1.42793 1.33893 1.75704 1.19882 0.94437 1.03219 0.93927 1.21397 0.92267 0.96431 0.99799 1.21033 0.99961 1.00891 0.92153 1.21075 0.94153 0.97698 0.97604 1.19079 0.94125 1.02750 0.93124 1.20239 1.05553 0.89115 0.95794 1.23436 0.73771 0.92245 0.78798 1.90783 1.41591 1.59412 1.47066 1.84525 1.78544 1.32234 1.37962 1.20912 0.99873 0.95900 0.90609 1.22253 0.91942 0.87431 1.01185 1.21944 1.00113 0.94621 0.99545 0.92982 0.95430 0.92013 0.92943 0.91998 0.90286 0.84988 0.85169 0.85803 0.86437 0.86460 0.73111 0.85467 0.90506 0.91828 0.87676 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 11.30 55.43 0.63 -23.46 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.47 8.56 -34.44 -0.29 -13.77 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 10 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 11 C 0.11 2.06 6.43 -3.71 -0.02 2.03 16 12 N -0.59 -10.83 2.98 -174.14 -0.52 -11.35 16 13 C 0.55 10.26 7.24 -12.33 -0.09 10.17 16 14 O -0.55 -11.77 16.47 5.32 0.09 -11.69 16 15 C -0.11 -1.75 5.00 -104.97 -0.52 -2.28 16 16 C -0.08 -1.07 7.37 -39.19 -0.29 -1.36 16 17 C -0.12 -1.36 10.03 -39.64 -0.40 -1.76 16 18 C -0.09 -0.92 9.69 -39.50 -0.38 -1.30 16 19 C -0.09 -1.04 4.37 -104.68 -0.46 -1.49 16 20 C -0.07 -0.57 5.94 -29.04 -0.17 -0.74 16 21 C 0.48 4.65 8.32 36.00 0.30 4.95 16 22 O -0.50 -6.94 16.79 -18.75 -0.31 -7.26 16 23 O -0.52 -3.67 13.42 -39.27 -0.53 -4.20 16 24 C -0.05 -0.77 9.39 -39.19 -0.37 -1.13 16 25 C 0.09 1.67 5.34 -3.93 -0.02 1.65 16 26 C -0.12 -2.70 5.14 -26.83 -0.14 -2.83 16 27 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 33 H 0.13 1.64 7.07 -52.48 -0.37 1.27 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 36 H 0.12 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.12 0.64 8.08 -51.92 -0.42 0.22 16 38 H 0.41 1.34 9.10 45.56 0.41 1.75 16 39 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.08 1.22 4.56 -51.93 -0.24 0.99 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.11 2.54 6.03 -51.93 -0.31 2.23 16 43 H 0.04 0.87 8.14 -51.94 -0.42 0.45 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -33.19 356.33 -8.64 -41.83 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.06 Total: 3.17 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.28 Total: -8.03 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.11 Total: -34.81 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.75 Total: -23.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.19 -8.64 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.046 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds