Wall clock time and date at job start Tue Mar 31 2020 10:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00215 * 2 1 4 4 H 1.48507 * 109.46912 * 269.99691 * 3 2 1 5 5 H 1.48496 * 109.47104 * 29.99396 * 3 2 1 6 6 H 1.48495 * 109.47082 * 149.99874 * 3 2 1 7 7 C 1.37876 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00401 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.53049 * 109.45950 * 179.97438 * 9 7 2 11 11 C 1.53189 * 109.31351 * 178.62586 * 10 9 7 12 12 N 1.46932 * 108.77411 * 54.63322 * 11 10 9 13 13 C 1.34778 * 120.62858 * 126.36987 * 12 11 10 14 14 O 1.21554 * 119.99782 * 3.78866 * 13 12 11 15 15 C 1.47842 * 120.00038 * 183.78348 * 13 12 11 16 16 C 1.39600 * 120.14698 * 309.45420 * 15 13 12 17 17 C 1.37932 * 119.85375 * 180.02562 * 16 15 13 18 18 C 1.38376 * 120.14466 * 359.72721 * 17 16 15 19 19 C 1.38330 * 120.29353 * 0.54556 * 18 17 16 20 20 C 1.50701 * 119.93064 * 179.72339 * 19 18 17 21 21 C 1.50696 * 109.47395 * 269.73301 * 20 19 18 22 22 O 1.20823 * 119.99816 * 359.97438 * 21 20 19 23 23 O 1.34235 * 120.00253 * 180.02562 * 21 20 19 24 24 C 1.37979 * 120.14557 * 359.45344 * 19 18 17 25 25 C 1.46927 * 118.73925 * 306.64018 * 12 11 10 26 26 C 1.52763 * 109.00521 * 53.31337 * 25 12 11 27 27 H 0.97004 * 119.99575 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46245 * 299.96813 * 9 7 2 29 29 H 1.08993 * 109.49731 * 58.67251 * 10 9 7 30 30 H 1.08998 * 109.49386 * 298.57755 * 10 9 7 31 31 H 1.09004 * 109.58651 * 294.84675 * 11 10 9 32 32 H 1.08997 * 109.70171 * 174.49246 * 11 10 9 33 33 H 1.08003 * 120.06572 * 359.97438 * 16 15 13 34 34 H 1.07999 * 119.92371 * 180.02562 * 17 16 15 35 35 H 1.08007 * 119.85226 * 180.29676 * 18 17 16 36 36 H 1.09003 * 109.47265 * 149.72693 * 20 19 18 37 37 H 1.09008 * 109.46792 * 29.73306 * 20 19 18 38 38 H 0.96696 * 116.99874 * 180.02562 * 23 21 20 39 39 H 1.07999 * 120.07471 * 180.24819 * 24 19 18 40 40 H 1.08996 * 109.58423 * 173.14452 * 25 12 11 41 41 H 1.09000 * 109.58703 * 293.57346 * 25 12 11 42 42 H 1.09004 * 109.55935 * 185.55299 * 26 25 12 43 43 H 1.08989 * 109.36139 * 65.49983 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2457 -3.6623 0.0005 11 6 1.4766 -4.9867 0.0352 12 7 0.5223 -5.0087 -1.0818 13 6 0.5120 -6.0344 -1.9561 14 8 1.2495 -6.9855 -1.7857 15 6 -0.3963 -6.0028 -3.1221 16 6 -1.7534 -5.7267 -2.9464 17 6 -2.5955 -5.6992 -4.0385 18 6 -2.0967 -5.9391 -5.3068 19 6 -0.7541 -6.2188 -5.4872 20 6 -0.2208 -6.4849 -6.8714 21 6 -0.3038 -7.9603 -7.1667 22 8 -0.7497 -8.7181 -6.3380 23 8 0.1187 -8.4328 -8.3500 24 6 0.0991 -6.2493 -4.4033 25 6 -0.4166 -3.8884 -1.2311 26 6 0.3701 -2.5790 -1.2484 27 1 -0.4850 0.8401 -0.0004 28 1 0.6244 -2.5567 0.8906 29 1 2.8881 -3.5916 0.8782 30 1 2.8556 -3.6193 -0.9018 31 1 0.9370 -5.0713 0.9785 32 1 2.1734 -5.8190 -0.0630 33 1 -2.1431 -5.5358 -1.9574 34 1 -3.6455 -5.4853 -3.9040 35 1 -2.7595 -5.9117 -6.1592 36 1 0.8182 -6.1606 -6.9290 37 1 -0.8143 -5.9343 -7.6014 38 1 0.0452 -9.3862 -8.4935 39 1 1.1479 -6.4639 -4.5459 40 1 -0.9668 -3.9949 -2.1660 41 1 -1.1136 -3.8817 -0.3931 42 1 -0.3225 -1.7373 -1.2595 43 1 0.9976 -2.5462 -2.1389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:07 Heat of formation + Delta-G solvation = -127.057349 kcal Electronic energy + Delta-G solvation = -26303.583218 eV Core-core repulsion = 22505.320783 eV Total energy + Delta-G solvation = -3798.262435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72280 -41.17142 -39.59628 -38.39228 -37.06269 -35.41400 -34.28230 -33.04821 -32.14136 -31.58038 -29.14109 -28.12061 -25.61061 -24.27869 -23.85503 -23.50629 -22.18201 -21.29731 -19.98793 -19.06812 -18.57123 -17.99741 -17.63232 -17.31035 -17.19650 -16.89844 -16.50756 -16.37443 -15.61805 -15.41804 -14.93533 -14.77746 -14.51321 -14.36132 -14.32172 -14.11753 -13.88950 -13.50148 -13.23727 -13.19416 -13.03270 -12.80201 -12.64982 -12.49112 -12.45577 -12.18764 -12.10356 -11.94942 -11.65260 -11.49134 -11.08558 -11.02359 -10.75688 -10.39834 -9.95323 -9.76590 -9.58289 -8.07237 -6.20160 -0.00503 0.29388 1.24974 1.42101 1.44293 1.53053 1.55875 2.00478 2.20590 2.44911 2.84642 3.19387 3.41033 3.53702 3.89088 4.03768 4.08629 4.23389 4.25430 4.29656 4.33705 4.44776 4.48607 4.54087 4.57124 4.62134 4.72981 4.82776 4.86876 4.94441 5.01173 5.16221 5.22090 5.32332 5.37799 5.41280 5.44877 5.52638 5.64642 5.65471 5.91345 5.98042 6.11813 6.37893 6.41328 6.88568 7.02504 7.03073 7.47325 8.96356 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.003070 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.357857 B = 9119.701685 C = 9547.890129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.593 5.593 13 C 0.553 3.447 14 O -0.588 6.588 15 C -0.142 4.142 16 C -0.092 4.092 17 C -0.119 4.119 18 C -0.082 4.082 19 C -0.090 4.090 20 C -0.070 4.070 21 C 0.483 3.517 22 O -0.551 6.551 23 O -0.512 6.512 24 C -0.074 4.074 25 C 0.107 3.893 26 C -0.113 4.113 27 H 0.262 0.738 28 H 0.006 0.994 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.427 0.573 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 -11.184 -15.700 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.324 5.324 13 C 0.343 3.657 14 O -0.470 6.470 15 C -0.145 4.145 16 C -0.111 4.111 17 C -0.136 4.136 18 C -0.100 4.100 19 C -0.090 4.090 20 C -0.107 4.107 21 C 0.327 3.673 22 O -0.441 6.441 23 O -0.326 6.326 24 C -0.093 4.093 25 C -0.015 4.015 26 C -0.152 4.152 27 H 0.071 0.929 28 H 0.024 0.976 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.155 0.845 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.150 0.850 37 H 0.172 0.828 38 H 0.288 0.712 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.390 -11.321 -15.291 20.071 hybrid contribution 0.745 0.319 0.467 0.935 sum -5.646 -11.002 -14.824 19.305 Atomic orbital electron populations 1.69941 1.06745 1.27151 1.51124 1.25618 0.95717 1.01875 0.94818 0.85706 0.78740 0.79953 0.78129 1.20267 1.20799 1.19867 1.21519 0.92872 0.92210 1.50705 0.93525 1.18613 0.93015 0.91891 0.93750 1.21857 0.98348 0.94141 1.00747 1.21660 0.91923 0.98451 0.88644 1.48221 1.35920 1.20796 1.27434 1.18848 0.82450 0.81763 0.82653 1.90703 1.44545 1.35155 1.76573 1.19794 0.95070 1.06397 0.93215 1.21533 0.91531 0.96982 1.01049 1.21443 1.01163 0.99383 0.91641 1.21586 0.94181 0.95561 0.98671 1.19413 0.94365 1.01366 0.93871 1.20379 1.07070 0.88547 0.94662 1.23667 0.72475 0.92548 0.78602 1.90778 1.44073 1.60672 1.48583 1.84488 1.77671 1.33896 1.36501 1.21023 1.00160 0.96984 0.91147 1.22125 0.91307 0.85187 1.02862 1.21709 0.99428 0.96060 0.97992 0.92873 0.97637 0.91491 0.94013 0.90752 0.90222 0.84522 0.82035 0.82150 0.85007 0.82811 0.71159 0.86428 0.88138 0.91033 0.89892 0.95641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.57 11.30 21.45 0.24 -49.33 16 2 C 0.02 1.00 5.30 84.65 0.45 1.45 16 3 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -28.71 8.56 25.60 0.22 -28.49 16 8 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 9 C 0.05 2.20 2.07 -11.51 -0.02 2.18 16 10 C -0.11 -4.69 5.30 30.67 0.16 -4.53 16 11 C 0.12 4.30 6.43 86.36 0.55 4.86 16 12 N -0.59 -21.94 2.98 -823.14 -2.45 -24.39 16 13 C 0.55 20.88 7.24 86.79 0.63 21.50 16 14 O -0.59 -25.83 16.47 -3.89 -0.06 -25.89 16 15 C -0.14 -4.43 5.00 -20.09 -0.10 -4.54 16 16 C -0.09 -2.34 7.37 22.53 0.17 -2.17 16 17 C -0.12 -2.28 10.03 22.23 0.22 -2.05 16 18 C -0.08 -1.45 9.69 22.32 0.22 -1.23 16 19 C -0.09 -1.86 4.37 -19.90 -0.09 -1.95 16 20 C -0.07 -0.93 5.94 29.10 0.17 -0.76 16 21 C 0.48 8.38 8.32 71.23 0.59 8.98 16 22 O -0.55 -14.64 16.79 21.97 0.37 -14.27 16 23 O -0.51 -5.90 13.42 -51.46 -0.69 -6.59 16 24 C -0.07 -2.08 9.39 22.53 0.21 -1.87 16 25 C 0.11 3.79 5.34 86.22 0.46 4.25 16 26 C -0.11 -5.02 5.14 30.53 0.16 -4.87 16 27 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.08 2.98 7.02 -2.39 -0.02 2.96 16 33 H 0.14 3.21 7.07 -2.91 -0.02 3.19 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.13 1.41 8.08 -2.39 -0.02 1.39 16 37 H 0.15 0.93 8.08 -2.38 -0.02 0.91 16 38 H 0.43 1.83 9.10 -74.06 -0.67 1.15 16 39 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.10 3.13 4.56 -2.39 -0.01 3.11 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.08 4.08 6.03 -2.38 -0.01 4.07 16 43 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -73.62 356.33 3.80 -69.82 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.37 Total: 15.43 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.00 Total: -9.22 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -2.21 Total: -73.73 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.39 Total: -46.75 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -73.62 3.80 -69.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.235 kcal (2) G-P(sol) polarization free energy of solvation -73.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds