Wall clock time and date at job start Tue Mar 31 2020 11:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47483 * 240.00429 * 3 2 1 5 5 H 1.48501 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47121 * 120.00314 * 3 2 1 7 7 C 1.37877 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.53046 * 109.46020 * 180.02562 * 9 7 2 11 11 C 1.53187 * 109.31034 * 178.62815 * 10 9 7 12 12 N 1.46930 * 108.77595 * 54.63831 * 11 10 9 13 13 C 1.34779 * 120.63114 * 126.36568 * 12 11 10 14 14 O 1.21279 * 119.99976 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99840 * 180.02562 * 13 12 11 16 16 C 1.50702 * 109.46807 * 179.97438 * 15 13 12 17 17 C 1.38395 * 119.92499 * 90.00038 * 16 15 13 18 18 C 1.38346 * 120.30408 * 179.97438 * 17 16 15 19 19 C 1.37961 * 120.15092 * 0.27977 * 18 17 16 20 20 C 1.39616 * 119.84544 * 359.46687 * 19 18 17 21 21 C 1.47722 * 120.14846 * 180.25068 * 20 19 18 22 22 O 1.21477 * 120.00070 * 180.27721 * 21 20 19 23 23 O 1.34711 * 120.00451 * 0.27959 * 21 20 19 24 24 C 1.37922 * 119.92865 * 270.01731 * 16 15 13 25 25 C 1.46927 * 118.73711 * 306.64260 * 12 11 10 26 26 C 1.52754 * 109.00885 * 53.30672 * 25 12 11 27 27 H 0.97000 * 120.00057 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.46289 * 299.97790 * 9 7 2 29 29 H 1.09004 * 109.49120 * 58.67884 * 10 9 7 30 30 H 1.09005 * 109.52049 * 298.59820 * 10 9 7 31 31 H 1.08993 * 109.59083 * 294.84767 * 11 10 9 32 32 H 1.09004 * 109.70026 * 174.48926 * 11 10 9 33 33 H 1.09001 * 109.47295 * 59.99887 * 15 13 12 34 34 H 1.08999 * 109.47261 * 299.99677 * 15 13 12 35 35 H 1.07998 * 119.84568 * 359.97438 * 17 16 15 36 36 H 1.08002 * 119.92160 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.07861 * 179.72248 * 19 18 17 38 38 H 0.96701 * 117.00467 * 179.97438 * 23 21 20 39 39 H 1.08003 * 120.07250 * 359.97438 * 24 16 15 40 40 H 1.09002 * 109.58734 * 173.14317 * 25 12 11 41 41 H 1.08994 * 109.58498 * 293.56242 * 25 12 11 42 42 H 1.09006 * 109.56443 * 185.55007 * 26 25 12 43 43 H 1.09002 * 109.36361 * 65.50289 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2459 -3.6622 -0.0005 11 6 1.4768 -4.9866 0.0341 12 7 0.5226 -5.0087 -1.0830 13 6 0.5125 -6.0344 -1.9573 14 8 1.2963 -6.9506 -1.8263 15 6 -0.4720 -6.0422 -3.0982 16 6 -0.2761 -7.2888 -3.9221 17 6 -0.9795 -8.4394 -3.6112 18 6 -0.8062 -9.5881 -4.3626 19 6 0.0746 -9.5952 -5.4244 20 6 0.7835 -8.4364 -5.7469 21 6 1.7242 -8.4349 -6.8859 22 8 2.3433 -7.4267 -7.1610 23 8 1.8954 -9.5517 -7.6196 24 6 0.6040 -7.2806 -4.9840 25 6 -0.4162 -3.8884 -1.2324 26 6 0.3703 -2.5791 -1.2495 27 1 -0.4850 0.8400 0.0004 28 1 0.6252 -2.5571 0.8899 29 1 2.8882 -3.5914 0.8773 30 1 2.8563 -3.6194 -0.9026 31 1 0.9372 -5.0713 0.9773 32 1 2.1737 -5.8189 -0.0642 33 1 -0.3101 -5.1645 -3.7239 34 1 -1.4873 -6.0238 -2.7022 35 1 -1.6669 -8.4406 -2.7782 36 1 -1.3580 -10.4827 -4.1142 37 1 0.2124 -10.4938 -6.0074 38 1 2.5212 -9.5021 -8.3551 39 1 1.1522 -6.3820 -5.2256 40 1 -0.9664 -3.9949 -2.1674 41 1 -1.1134 -3.8818 -0.3947 42 1 -0.3222 -1.7373 -1.2608 43 1 0.9980 -2.5461 -2.1401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:01 Heat of formation + Delta-G solvation = -111.974325 kcal Electronic energy + Delta-G solvation = -25930.310004 eV Core-core repulsion = 22132.701618 eV Total energy + Delta-G solvation = -3797.608386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67020 -39.88801 -38.71707 -36.79715 -36.29787 -33.57328 -33.16289 -31.45766 -31.25620 -30.15896 -27.95427 -26.00226 -24.96698 -23.15477 -22.47189 -21.95273 -21.23181 -19.87961 -18.40402 -18.07982 -17.41579 -16.99566 -16.21482 -16.13029 -15.81492 -15.66671 -15.40200 -14.73281 -14.58779 -14.31862 -13.59402 -13.49933 -13.33250 -13.09152 -12.88435 -12.83619 -12.49022 -12.41992 -11.98879 -11.79278 -11.76697 -11.61843 -11.32944 -11.24609 -10.94120 -10.79728 -10.68723 -10.41262 -10.14036 -9.71514 -9.52856 -9.22464 -9.20104 -9.03487 -8.86694 -8.40424 -8.04087 -6.05902 -4.11840 0.51597 1.14523 2.35308 2.76618 2.93025 3.28644 3.33234 3.36183 3.37038 3.69428 4.39107 4.45420 4.62379 4.74911 4.88904 4.94078 5.05741 5.12097 5.23625 5.42421 5.43323 5.52713 5.67579 5.76041 5.79298 5.92191 6.03988 6.04821 6.12975 6.14391 6.21716 6.26657 6.34116 6.42310 6.62781 6.63600 6.86512 7.00601 7.10962 7.23696 7.63181 7.66174 7.88161 7.88931 8.00629 8.37460 8.51451 8.91294 9.53438 10.99657 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019450 B = 0.002760 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.230931 B =10142.525357 C =10814.719119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.112 3.888 12 N -0.600 5.600 13 C 0.512 3.488 14 O -0.552 6.552 15 C -0.104 4.104 16 C -0.069 4.069 17 C -0.066 4.066 18 C -0.134 4.134 19 C -0.065 4.065 20 C -0.130 4.130 21 C 0.527 3.473 22 O -0.512 6.512 23 O -0.514 6.514 24 C -0.038 4.038 25 C 0.102 3.898 26 C -0.126 4.126 27 H 0.261 0.739 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.413 0.587 39 H 0.137 0.863 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 -17.757 -10.247 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.332 5.332 13 C 0.300 3.700 14 O -0.431 6.431 15 C -0.144 4.144 16 C -0.070 4.070 17 C -0.084 4.084 18 C -0.152 4.152 19 C -0.083 4.083 20 C -0.132 4.132 21 C 0.372 3.628 22 O -0.401 6.401 23 O -0.326 6.326 24 C -0.056 4.056 25 C -0.020 4.020 26 C -0.164 4.164 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.272 0.728 39 H 0.155 0.845 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.954 -17.836 -9.906 20.995 hybrid contribution 0.889 1.147 -0.462 1.523 sum -4.065 -16.689 -10.368 20.064 Atomic orbital electron populations 1.69818 1.05836 1.26602 1.50903 1.24951 0.94884 0.99049 0.95037 0.86673 0.79643 0.83134 0.78651 1.20310 1.21299 1.20313 1.21171 0.92938 0.90585 1.50367 0.92764 1.18622 0.92631 0.91725 0.93939 1.22012 0.98935 0.94219 1.01021 1.21691 0.91767 0.99715 0.87815 1.48256 1.36218 1.20887 1.27860 1.20328 0.84639 0.82094 0.82974 1.90669 1.41387 1.36297 1.74706 1.20740 1.00662 0.97033 0.95962 1.19303 0.96973 0.95264 0.95410 1.21318 0.97407 0.91988 0.97728 1.21095 0.99503 0.98528 0.96029 1.21404 0.93724 0.96972 0.96204 1.18935 1.00982 0.96273 0.96964 1.20938 0.80182 0.80213 0.81477 1.90913 1.46322 1.33988 1.68846 1.84545 1.63391 1.39507 1.45161 1.21121 0.94672 0.97368 0.92444 1.21987 0.91724 0.87569 1.00724 1.21960 1.00161 0.94642 0.99683 0.92910 0.95460 0.92152 0.92955 0.92228 0.90380 0.87508 0.87666 0.85341 0.85074 0.84622 0.72815 0.84533 0.91400 0.91817 0.87652 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 11.31 55.43 0.63 -23.45 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.52 8.56 -34.44 -0.29 -13.81 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 10 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 11 C 0.11 2.02 6.44 -3.71 -0.02 1.99 16 12 N -0.60 -10.29 2.98 -173.04 -0.52 -10.80 16 13 C 0.51 8.43 7.69 -10.99 -0.08 8.35 16 14 O -0.55 -10.78 15.45 5.56 0.09 -10.70 16 15 C -0.10 -1.28 4.17 -29.03 -0.12 -1.40 16 16 C -0.07 -0.85 4.37 -104.68 -0.46 -1.31 16 17 C -0.07 -0.69 9.69 -39.48 -0.38 -1.08 16 18 C -0.13 -1.23 10.03 -39.64 -0.40 -1.62 16 19 C -0.06 -0.64 9.62 -39.17 -0.38 -1.01 16 20 C -0.13 -1.57 5.87 -104.98 -0.62 -2.19 16 21 C 0.53 6.33 8.27 34.61 0.29 6.62 16 22 O -0.51 -7.75 17.13 -19.25 -0.33 -8.08 16 23 O -0.51 -4.25 12.68 -40.52 -0.51 -4.76 16 24 C -0.04 -0.50 9.24 -39.17 -0.36 -0.86 16 25 C 0.10 1.70 6.31 -3.94 -0.02 1.68 16 26 C -0.13 -2.68 5.14 -26.84 -0.14 -2.81 16 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 33 H 0.11 1.21 7.62 -51.93 -0.40 0.82 16 34 H 0.11 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 1.05 7.61 -52.49 -0.40 0.65 16 38 H 0.41 1.57 9.11 45.56 0.42 1.98 16 39 H 0.14 1.88 7.65 -52.48 -0.40 1.48 16 40 H 0.07 0.92 5.94 -51.93 -0.31 0.62 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.11 2.50 6.03 -51.93 -0.31 2.18 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -32.50 358.36 -8.79 -41.28 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.10 Total: 2.99 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -3.42 Total: -7.61 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.11 Total: -34.25 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.76 Total: -23.53 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.50 -8.79 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.692 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds