Wall clock time and date at job start Tue Mar 31 2020 11:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47483 * 240.00429 * 3 2 1 5 5 H 1.48501 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47121 * 120.00314 * 3 2 1 7 7 C 1.37877 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.53046 * 109.46020 * 180.02562 * 9 7 2 11 11 C 1.53187 * 109.31034 * 178.62815 * 10 9 7 12 12 N 1.46930 * 108.77595 * 54.63831 * 11 10 9 13 13 C 1.34779 * 120.63114 * 126.36568 * 12 11 10 14 14 O 1.21279 * 119.99976 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99840 * 180.02562 * 13 12 11 16 16 C 1.50702 * 109.46807 * 179.97438 * 15 13 12 17 17 C 1.38395 * 119.92499 * 90.00038 * 16 15 13 18 18 C 1.38346 * 120.30408 * 179.97438 * 17 16 15 19 19 C 1.37961 * 120.15092 * 0.27977 * 18 17 16 20 20 C 1.39616 * 119.84544 * 359.46687 * 19 18 17 21 21 C 1.47722 * 120.14846 * 180.25068 * 20 19 18 22 22 O 1.21477 * 120.00070 * 180.27721 * 21 20 19 23 23 O 1.34711 * 120.00451 * 0.27959 * 21 20 19 24 24 C 1.37922 * 119.92865 * 270.01731 * 16 15 13 25 25 C 1.46927 * 118.73711 * 306.64260 * 12 11 10 26 26 C 1.52754 * 109.00885 * 53.30672 * 25 12 11 27 27 H 0.97000 * 120.00057 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.46289 * 299.97790 * 9 7 2 29 29 H 1.09004 * 109.49120 * 58.67884 * 10 9 7 30 30 H 1.09005 * 109.52049 * 298.59820 * 10 9 7 31 31 H 1.08993 * 109.59083 * 294.84767 * 11 10 9 32 32 H 1.09004 * 109.70026 * 174.48926 * 11 10 9 33 33 H 1.09001 * 109.47295 * 59.99887 * 15 13 12 34 34 H 1.08999 * 109.47261 * 299.99677 * 15 13 12 35 35 H 1.07998 * 119.84568 * 359.97438 * 17 16 15 36 36 H 1.08002 * 119.92160 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.07861 * 179.72248 * 19 18 17 38 38 H 0.96701 * 117.00467 * 179.97438 * 23 21 20 39 39 H 1.08003 * 120.07250 * 359.97438 * 24 16 15 40 40 H 1.09002 * 109.58734 * 173.14317 * 25 12 11 41 41 H 1.08994 * 109.58498 * 293.56242 * 25 12 11 42 42 H 1.09006 * 109.56443 * 185.55007 * 26 25 12 43 43 H 1.09002 * 109.36361 * 65.50289 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2459 -3.6622 -0.0005 11 6 1.4768 -4.9866 0.0341 12 7 0.5226 -5.0087 -1.0830 13 6 0.5125 -6.0344 -1.9573 14 8 1.2963 -6.9506 -1.8263 15 6 -0.4720 -6.0422 -3.0982 16 6 -0.2761 -7.2888 -3.9221 17 6 -0.9795 -8.4394 -3.6112 18 6 -0.8062 -9.5881 -4.3626 19 6 0.0746 -9.5952 -5.4244 20 6 0.7835 -8.4364 -5.7469 21 6 1.7242 -8.4349 -6.8859 22 8 2.3433 -7.4267 -7.1610 23 8 1.8954 -9.5517 -7.6196 24 6 0.6040 -7.2806 -4.9840 25 6 -0.4162 -3.8884 -1.2324 26 6 0.3703 -2.5791 -1.2495 27 1 -0.4850 0.8400 0.0004 28 1 0.6252 -2.5571 0.8899 29 1 2.8882 -3.5914 0.8773 30 1 2.8563 -3.6194 -0.9026 31 1 0.9372 -5.0713 0.9773 32 1 2.1737 -5.8189 -0.0642 33 1 -0.3101 -5.1645 -3.7239 34 1 -1.4873 -6.0238 -2.7022 35 1 -1.6669 -8.4406 -2.7782 36 1 -1.3580 -10.4827 -4.1142 37 1 0.2124 -10.4938 -6.0074 38 1 2.5212 -9.5021 -8.3551 39 1 1.1522 -6.3820 -5.2256 40 1 -0.9664 -3.9949 -2.1674 41 1 -1.1134 -3.8818 -0.3947 42 1 -0.3222 -1.7373 -1.2608 43 1 0.9980 -2.5461 -2.1401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:00 Heat of formation + Delta-G solvation = -131.288015 kcal Electronic energy + Delta-G solvation = -25931.147508 eV Core-core repulsion = 22132.701618 eV Total energy + Delta-G solvation = -3798.445890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59615 -41.10001 -39.67922 -38.30689 -37.14203 -35.32038 -34.19265 -32.95008 -32.23925 -31.72070 -29.08966 -27.68736 -25.80625 -24.75128 -23.94930 -22.96143 -22.15951 -21.34207 -19.79763 -18.97195 -18.60897 -18.30511 -17.88878 -16.96912 -16.77099 -16.69295 -16.67304 -16.46957 -15.80248 -15.23587 -14.94201 -14.86509 -14.62037 -14.40457 -14.24406 -14.02379 -13.97542 -13.43279 -13.24864 -13.09614 -12.98233 -12.79494 -12.64410 -12.61993 -12.47637 -12.15241 -12.10140 -11.90355 -11.71589 -11.47019 -11.01548 -10.99506 -10.71783 -10.39104 -10.03885 -9.79425 -9.52462 -8.08255 -6.20886 -0.32524 0.32221 1.41900 1.42822 1.48121 1.49858 1.65607 2.00050 2.15075 2.43767 2.78415 3.18300 3.57465 3.71761 3.87021 4.00329 4.10440 4.17878 4.25955 4.28167 4.34120 4.38760 4.51348 4.56979 4.60074 4.66675 4.76869 4.85761 4.88032 4.98558 5.00074 5.18781 5.24526 5.26537 5.38742 5.43996 5.48140 5.53807 5.56561 5.65830 5.87285 5.99767 6.14827 6.40103 6.54511 6.87849 6.91369 7.20532 7.46499 8.94881 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019450 B = 0.002760 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.230931 B =10142.525357 C =10814.719119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.043 0.957 9 C 0.046 3.954 10 C -0.114 4.114 11 C 0.118 3.882 12 N -0.604 5.604 13 C 0.511 3.489 14 O -0.584 6.584 15 C -0.098 4.098 16 C -0.085 4.085 17 C -0.068 4.068 18 C -0.128 4.128 19 C -0.058 4.058 20 C -0.151 4.151 21 C 0.532 3.468 22 O -0.555 6.555 23 O -0.500 6.500 24 C -0.062 4.062 25 C 0.113 3.887 26 C -0.118 4.118 27 H 0.262 0.738 28 H 0.006 0.994 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.433 0.567 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 -19.650 -10.705 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.153 4.153 11 C -0.005 4.005 12 N -0.336 5.336 13 C 0.301 3.699 14 O -0.465 6.465 15 C -0.138 4.138 16 C -0.085 4.085 17 C -0.086 4.086 18 C -0.145 4.145 19 C -0.076 4.076 20 C -0.152 4.152 21 C 0.378 3.622 22 O -0.448 6.448 23 O -0.313 6.313 24 C -0.080 4.080 25 C -0.009 4.009 26 C -0.157 4.157 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.295 0.705 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.518 -19.753 -10.385 23.249 hybrid contribution 1.406 1.655 -0.338 2.198 sum -5.111 -18.099 -10.723 21.649 Atomic orbital electron populations 1.69919 1.06638 1.27211 1.51084 1.25587 0.95725 1.01748 0.94851 0.85806 0.78606 0.79878 0.78497 1.20262 1.20634 1.20072 1.21519 0.92802 0.92458 1.50783 0.93825 1.18595 0.93021 0.91641 0.93956 1.21857 0.98385 0.94711 1.00307 1.21537 0.92039 0.97847 0.89035 1.48304 1.36116 1.21331 1.27889 1.21043 0.84689 0.81042 0.83152 1.90650 1.42879 1.37507 1.75477 1.20784 1.00978 0.97654 0.94338 1.19380 0.97655 0.96124 0.95381 1.21672 0.97103 0.91573 0.98265 1.21530 0.98798 0.99309 0.94910 1.21720 0.92793 0.96748 0.96358 1.19104 1.01899 0.96946 0.97288 1.21040 0.79489 0.80211 0.81477 1.90893 1.48095 1.35641 1.70121 1.84492 1.63763 1.37554 1.45537 1.21118 0.95641 0.97396 0.93858 1.21881 0.90982 0.84889 1.03125 1.21735 0.99485 0.96652 0.97842 0.92847 0.97609 0.92066 0.94450 0.90981 0.90519 0.86811 0.84264 0.83082 0.81564 0.82290 0.70500 0.86603 0.87619 0.91013 0.90000 0.95629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.52 11.31 21.45 0.24 -49.28 16 2 C 0.02 1.08 5.30 84.65 0.45 1.53 16 3 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -29.04 8.56 25.60 0.22 -28.82 16 8 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 9 C 0.05 2.21 2.07 -11.51 -0.02 2.18 16 10 C -0.11 -4.73 5.30 30.67 0.16 -4.57 16 11 C 0.12 4.20 6.44 86.36 0.56 4.75 16 12 N -0.60 -20.01 2.98 -819.76 -2.44 -22.45 16 13 C 0.51 16.13 7.69 87.66 0.67 16.80 16 14 O -0.58 -22.43 15.45 -3.03 -0.05 -22.48 16 15 C -0.10 -2.20 4.17 29.10 0.12 -2.08 16 16 C -0.08 -1.96 4.37 -19.90 -0.09 -2.04 16 17 C -0.07 -1.22 9.69 22.33 0.22 -1.00 16 18 C -0.13 -1.88 10.03 22.23 0.22 -1.66 16 19 C -0.06 -0.99 9.62 22.54 0.22 -0.77 16 20 C -0.15 -3.54 5.87 -20.10 -0.12 -3.66 16 21 C 0.53 12.62 8.27 70.33 0.58 13.21 16 22 O -0.55 -17.35 17.13 19.91 0.34 -17.01 16 23 O -0.50 -7.43 12.68 -56.21 -0.71 -8.15 16 24 C -0.06 -1.63 9.24 22.53 0.21 -1.42 16 25 C 0.11 3.59 6.31 86.22 0.54 4.14 16 26 C -0.12 -5.07 5.14 30.53 0.16 -4.92 16 27 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 28 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.08 2.77 7.00 -2.38 -0.02 2.75 16 33 H 0.11 2.40 7.62 -2.39 -0.02 2.38 16 34 H 0.14 2.14 7.90 -2.39 -0.02 2.12 16 35 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.16 1.88 7.61 -2.91 -0.02 1.86 16 38 H 0.43 2.57 9.11 -74.06 -0.67 1.90 16 39 H 0.12 3.40 7.65 -2.91 -0.02 3.38 16 40 H 0.11 2.58 5.94 -2.39 -0.01 2.56 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.08 3.92 6.03 -2.38 -0.01 3.91 16 43 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.41 358.36 3.87 -68.54 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.36 Total: 14.25 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 4.10 Total: -8.31 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -2.20 Total: -71.73 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -0.42 Total: -47.64 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.41 3.87 -68.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.752 kcal (2) G-P(sol) polarization free energy of solvation -72.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds