Wall clock time and date at job start Tue Mar 31 2020 11:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86809 * 120.00030 * 2 1 4 4 H 1.48493 * 109.47037 * 240.00557 * 3 2 1 5 5 H 1.48507 * 109.46868 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47084 * 120.00201 * 3 2 1 7 7 C 1.37869 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00694 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00106 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.53725 * 61.15850 * 9 7 2 11 11 C 1.54270 * 110.48466 * 298.54911 * 9 7 2 12 12 C 1.53869 * 106.63967 * 217.73352 * 11 9 7 13 13 C 1.54268 * 106.60115 * 359.97438 * 12 11 9 14 14 H 1.09001 * 110.48482 * 264.93365 * 13 12 11 15 15 N 1.46496 * 110.48921 * 142.28956 * 13 12 11 16 16 C 1.34770 * 120.00080 * 86.45526 * 15 13 12 17 17 O 1.21281 * 120.00158 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99901 * 180.02562 * 16 15 13 19 19 C 1.50696 * 109.47027 * 180.02562 * 18 16 15 20 20 C 1.38389 * 119.92494 * 269.72202 * 19 18 16 21 21 C 1.38346 * 120.30471 * 179.72183 * 20 19 18 22 22 C 1.37962 * 120.15231 * 0.55588 * 21 20 19 23 23 C 1.39616 * 119.84271 * 359.72202 * 22 21 20 24 24 C 1.47724 * 120.14818 * 179.97438 * 23 22 21 25 25 O 1.21466 * 120.00262 * 180.02562 * 24 23 22 26 26 O 1.34720 * 119.99917 * 0.02562 * 24 23 22 27 27 C 1.37926 * 119.93059 * 89.99630 * 19 18 16 28 28 C 1.54895 * 104.19476 * 23.60777 * 13 12 11 29 29 H 0.96997 * 119.99790 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.03399 * 98.42351 * 11 9 7 31 31 H 1.08995 * 110.02943 * 337.04251 * 11 9 7 32 32 H 1.08999 * 110.03405 * 119.26051 * 12 11 9 33 33 H 1.09001 * 110.03705 * 240.64196 * 12 11 9 34 34 H 0.97001 * 119.99742 * 266.45601 * 15 13 12 35 35 H 1.09000 * 109.46929 * 299.99168 * 18 16 15 36 36 H 1.08993 * 109.47243 * 59.99708 * 18 16 15 37 37 H 1.08007 * 119.84753 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.92219 * 180.25455 * 21 20 19 39 39 H 1.07997 * 120.07783 * 179.69810 * 22 21 20 40 40 H 0.96697 * 116.99856 * 180.02562 * 26 24 23 41 41 H 1.08001 * 120.07134 * 359.97438 * 27 19 18 42 42 H 1.09001 * 110.75082 * 80.37254 * 28 13 12 43 43 H 1.08991 * 110.75596 * 203.55944 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6332 -2.5839 -0.8944 11 6 0.3836 -2.6217 1.2692 12 6 0.4450 -4.0963 1.7042 13 6 1.3475 -4.8197 0.6833 14 1 0.7448 -5.2798 -0.0999 15 7 2.1749 -5.8261 1.3531 16 6 1.6938 -7.0689 1.5541 17 8 0.5756 -7.3540 1.1810 18 6 2.5449 -8.1040 2.2437 19 6 1.7799 -9.3986 2.3423 20 6 0.9911 -9.6516 3.4509 21 6 0.2809 -10.8350 3.5470 22 6 0.3638 -11.7765 2.5419 23 6 1.1622 -11.5302 1.4234 24 6 1.2563 -12.5338 0.3435 25 8 1.9520 -12.3170 -0.6283 26 8 0.5705 -13.6896 0.4365 27 6 1.8717 -10.3311 1.3302 28 6 2.2335 -3.6938 0.0947 29 1 -0.4850 0.8400 0.0004 30 1 -0.6458 -2.3406 1.0467 31 1 0.7827 -1.9830 2.0571 32 1 0.8747 -4.1734 2.7029 33 1 -0.5546 -4.5308 1.6936 34 1 3.0691 -5.5980 1.6519 35 1 3.4576 -8.2647 1.6699 36 1 2.8012 -7.7558 3.2442 37 1 0.9258 -8.9197 4.2425 38 1 -0.3360 -11.0243 4.4130 39 1 -0.1872 -12.7019 2.6204 40 1 0.6639 -14.3155 -0.2946 41 1 2.4908 -10.1341 0.4675 42 1 3.0595 -3.4612 0.7667 43 1 2.6059 -3.9710 -0.8914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:10 Heat of formation + Delta-G solvation = -122.293628 kcal Electronic energy + Delta-G solvation = -25249.243665 eV Core-core repulsion = 21451.187801 eV Total energy + Delta-G solvation = -3798.055864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75331 -39.86173 -38.74887 -37.02756 -36.38531 -33.71683 -33.23565 -31.95781 -31.52708 -28.51534 -28.08961 -26.52626 -25.06069 -23.83790 -22.35912 -21.46630 -20.39585 -19.88776 -18.95431 -18.22849 -17.60205 -16.90248 -16.51955 -16.27652 -15.90104 -15.79542 -15.39691 -14.78439 -14.66476 -14.46107 -14.14362 -13.75487 -13.67304 -13.31987 -12.74045 -12.51409 -12.47129 -12.23727 -11.90928 -11.86888 -11.81880 -11.42683 -11.18901 -10.96484 -10.89795 -10.86224 -10.61389 -10.31976 -9.99695 -9.73487 -9.55824 -9.31918 -9.26764 -9.02237 -8.75430 -8.61029 -8.39179 -6.01608 -4.05275 0.42090 1.04063 2.25954 2.68045 2.79822 3.30173 3.30745 3.36070 3.37903 3.66623 4.32049 4.42826 4.52775 4.65153 4.80878 4.92715 4.97236 5.01917 5.25382 5.29960 5.31816 5.52264 5.55458 5.64706 5.67237 5.83393 5.94990 6.05476 6.13137 6.22129 6.30440 6.34363 6.52066 6.54523 6.64870 6.72052 6.90185 6.92640 7.26358 7.31545 7.57373 7.71158 7.76852 7.88000 8.00633 8.41256 8.45288 8.97071 9.58850 11.07868 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030392 B = 0.002173 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.070379 B =12880.587330 C =13187.126943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.030 0.970 11 C -0.094 4.094 12 C -0.133 4.133 13 C 0.136 3.864 14 H 0.084 0.916 15 N -0.719 5.719 16 C 0.508 3.492 17 O -0.536 6.536 18 C -0.106 4.106 19 C -0.072 4.072 20 C -0.065 4.065 21 C -0.132 4.132 22 C -0.063 4.063 23 C -0.131 4.131 24 C 0.528 3.472 25 O -0.513 6.513 26 O -0.513 6.513 27 C -0.039 4.039 28 C -0.120 4.120 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.398 0.602 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.414 0.586 41 H 0.136 0.864 42 H 0.061 0.939 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -24.115 8.153 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.049 0.951 11 C -0.133 4.133 12 C -0.172 4.172 13 C 0.032 3.968 14 H 0.102 0.898 15 N -0.369 5.369 16 C 0.294 3.706 17 O -0.413 6.413 18 C -0.146 4.146 19 C -0.073 4.073 20 C -0.084 4.084 21 C -0.150 4.150 22 C -0.081 4.081 23 C -0.132 4.132 24 C 0.373 3.627 25 O -0.403 6.403 26 O -0.325 6.325 27 C -0.057 4.057 28 C -0.158 4.158 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.231 0.769 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.272 0.728 41 H 0.154 0.846 42 H 0.080 0.920 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.021 -23.847 7.930 25.312 hybrid contribution 0.863 0.711 -0.312 1.161 sum 3.884 -23.136 7.617 24.666 Atomic orbital electron populations 1.69966 1.05872 1.26598 1.50186 1.24986 0.94841 0.99026 0.95123 0.86700 0.79613 0.83347 0.78551 1.20309 1.21363 1.20340 1.21072 0.92703 0.90409 1.51202 0.92681 1.19402 0.92007 0.91186 0.94130 0.95146 1.22052 1.01116 0.90650 0.99466 1.22621 0.98401 0.98503 0.97675 1.22087 0.92693 0.87415 0.94569 0.89824 1.46238 1.19122 1.11167 1.60374 1.20405 0.87555 0.82970 0.79708 1.90727 1.19927 1.79971 1.50666 1.20726 0.98822 0.91697 1.03312 1.19234 0.98790 0.94686 0.94562 1.21337 0.93435 0.96491 0.97091 1.21121 1.00372 0.94037 0.99493 1.21430 0.95392 0.99357 0.91954 1.18938 1.04377 0.94701 0.95164 1.20926 0.75780 0.80518 0.85495 1.90900 1.38759 1.77995 1.32603 1.84550 1.67035 1.29244 1.51703 1.21082 0.96074 0.90867 0.97652 1.22877 0.98634 0.95358 0.98947 0.92983 0.92512 0.92909 0.93142 0.93082 0.76860 0.87715 0.87611 0.85256 0.84970 0.84543 0.72751 0.84598 0.92008 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 12.35 55.43 0.68 -24.63 16 2 C 0.06 1.70 5.33 -17.82 -0.09 1.60 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -13.75 8.40 -34.44 -0.29 -14.03 16 8 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 9 C 0.05 1.25 2.80 -90.07 -0.25 1.00 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 11 C -0.09 -2.17 5.40 -25.61 -0.14 -2.31 16 12 C -0.13 -2.55 6.53 -25.62 -0.17 -2.72 16 13 C 0.14 2.42 3.16 -66.27 -0.21 2.21 16 14 H 0.08 1.64 7.67 -51.93 -0.40 1.24 16 15 N -0.72 -9.97 5.11 -52.20 -0.27 -10.23 16 16 C 0.51 7.10 7.82 -10.98 -0.09 7.02 16 17 O -0.54 -9.86 15.75 5.56 0.09 -9.77 16 18 C -0.11 -0.98 5.83 -29.03 -0.17 -1.15 16 19 C -0.07 -0.76 4.37 -104.68 -0.46 -1.22 16 20 C -0.07 -0.61 9.69 -39.49 -0.38 -1.00 16 21 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 22 C -0.06 -0.57 9.62 -39.17 -0.38 -0.94 16 23 C -0.13 -1.42 5.87 -104.98 -0.62 -2.04 16 24 C 0.53 5.76 8.27 34.61 0.29 6.04 16 25 O -0.51 -7.09 17.13 -19.24 -0.33 -7.42 16 26 O -0.51 -3.82 12.68 -40.55 -0.51 -4.33 16 27 C -0.04 -0.44 9.24 -39.17 -0.36 -0.80 16 28 C -0.12 -2.32 5.89 -24.70 -0.15 -2.46 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 30 H 0.06 1.41 7.94 -51.93 -0.41 1.00 16 31 H 0.05 1.28 7.83 -51.93 -0.41 0.88 16 32 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 4.32 8.53 -40.82 -0.35 3.97 16 35 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 38 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 39 H 0.14 0.96 7.61 -52.49 -0.40 0.56 16 40 H 0.41 1.23 9.11 45.56 0.42 1.65 16 41 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -34.25 367.23 -8.96 -43.21 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.28 Total: 4.03 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.86 Total: -12.32 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.42 Total: -34.87 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.76 Total: -21.52 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.25 -8.96 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.086 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds