Wall clock time and date at job start Tue Mar 31 2020 11:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86809 * 120.00030 * 2 1 4 4 H 1.48493 * 109.47037 * 240.00557 * 3 2 1 5 5 H 1.48507 * 109.46868 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47084 * 120.00201 * 3 2 1 7 7 C 1.37869 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00694 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00106 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.53725 * 61.15850 * 9 7 2 11 11 C 1.54270 * 110.48466 * 298.54911 * 9 7 2 12 12 C 1.53869 * 106.63967 * 217.73352 * 11 9 7 13 13 C 1.54268 * 106.60115 * 359.97438 * 12 11 9 14 14 H 1.09001 * 110.48482 * 264.93365 * 13 12 11 15 15 N 1.46496 * 110.48921 * 142.28956 * 13 12 11 16 16 C 1.34770 * 120.00080 * 86.45526 * 15 13 12 17 17 O 1.21281 * 120.00158 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99901 * 180.02562 * 16 15 13 19 19 C 1.50696 * 109.47027 * 180.02562 * 18 16 15 20 20 C 1.38389 * 119.92494 * 269.72202 * 19 18 16 21 21 C 1.38346 * 120.30471 * 179.72183 * 20 19 18 22 22 C 1.37962 * 120.15231 * 0.55588 * 21 20 19 23 23 C 1.39616 * 119.84271 * 359.72202 * 22 21 20 24 24 C 1.47724 * 120.14818 * 179.97438 * 23 22 21 25 25 O 1.21466 * 120.00262 * 180.02562 * 24 23 22 26 26 O 1.34720 * 119.99917 * 0.02562 * 24 23 22 27 27 C 1.37926 * 119.93059 * 89.99630 * 19 18 16 28 28 C 1.54895 * 104.19476 * 23.60777 * 13 12 11 29 29 H 0.96997 * 119.99790 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.03399 * 98.42351 * 11 9 7 31 31 H 1.08995 * 110.02943 * 337.04251 * 11 9 7 32 32 H 1.08999 * 110.03405 * 119.26051 * 12 11 9 33 33 H 1.09001 * 110.03705 * 240.64196 * 12 11 9 34 34 H 0.97001 * 119.99742 * 266.45601 * 15 13 12 35 35 H 1.09000 * 109.46929 * 299.99168 * 18 16 15 36 36 H 1.08993 * 109.47243 * 59.99708 * 18 16 15 37 37 H 1.08007 * 119.84753 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.92219 * 180.25455 * 21 20 19 39 39 H 1.07997 * 120.07783 * 179.69810 * 22 21 20 40 40 H 0.96697 * 116.99856 * 180.02562 * 26 24 23 41 41 H 1.08001 * 120.07134 * 359.97438 * 27 19 18 42 42 H 1.09001 * 110.75082 * 80.37254 * 28 13 12 43 43 H 1.08991 * 110.75596 * 203.55944 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6332 -2.5839 -0.8944 11 6 0.3836 -2.6217 1.2692 12 6 0.4450 -4.0963 1.7042 13 6 1.3475 -4.8197 0.6833 14 1 0.7448 -5.2798 -0.0999 15 7 2.1749 -5.8261 1.3531 16 6 1.6938 -7.0689 1.5541 17 8 0.5756 -7.3540 1.1810 18 6 2.5449 -8.1040 2.2437 19 6 1.7799 -9.3986 2.3423 20 6 0.9911 -9.6516 3.4509 21 6 0.2809 -10.8350 3.5470 22 6 0.3638 -11.7765 2.5419 23 6 1.1622 -11.5302 1.4234 24 6 1.2563 -12.5338 0.3435 25 8 1.9520 -12.3170 -0.6283 26 8 0.5705 -13.6896 0.4365 27 6 1.8717 -10.3311 1.3302 28 6 2.2335 -3.6938 0.0947 29 1 -0.4850 0.8400 0.0004 30 1 -0.6458 -2.3406 1.0467 31 1 0.7827 -1.9830 2.0571 32 1 0.8747 -4.1734 2.7029 33 1 -0.5546 -4.5308 1.6936 34 1 3.0691 -5.5980 1.6519 35 1 3.4576 -8.2647 1.6699 36 1 2.8012 -7.7558 3.2442 37 1 0.9258 -8.9197 4.2425 38 1 -0.3360 -11.0243 4.4130 39 1 -0.1872 -12.7019 2.6204 40 1 0.6639 -14.3155 -0.2946 41 1 2.4908 -10.1341 0.4675 42 1 3.0595 -3.4612 0.7667 43 1 2.6059 -3.9710 -0.8914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:09 Heat of formation + Delta-G solvation = -144.588675 kcal Electronic energy + Delta-G solvation = -25250.210451 eV Core-core repulsion = 21451.187801 eV Total energy + Delta-G solvation = -3799.022650 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54796 -40.93366 -39.66289 -38.55040 -37.14410 -35.29414 -34.14874 -33.62563 -32.23597 -30.03144 -29.48351 -27.91676 -25.80583 -25.70407 -23.18614 -22.28191 -21.58683 -21.31471 -20.69014 -19.00459 -18.50632 -18.27244 -17.97797 -16.97293 -16.92830 -16.70230 -16.63893 -16.44021 -16.14555 -15.49278 -15.22945 -14.97622 -14.40812 -14.33713 -14.10228 -14.02780 -13.65984 -13.45138 -13.08849 -12.99798 -12.74698 -12.64609 -12.63990 -12.49340 -12.40910 -12.14064 -12.05617 -11.71510 -11.68202 -11.41257 -11.12667 -10.85917 -10.75546 -10.46882 -10.03987 -9.94246 -9.79565 -8.09895 -6.20446 -0.32450 0.32551 1.44069 1.45240 1.48170 1.52658 1.72512 2.01363 2.29986 2.45960 2.83246 3.21234 3.59255 3.84819 3.88998 3.99222 4.03881 4.09831 4.16836 4.22452 4.29402 4.34448 4.63074 4.68952 4.70635 4.81478 4.86821 4.87782 4.99620 5.03130 5.07550 5.15090 5.24480 5.36369 5.38989 5.43206 5.47835 5.53740 5.67322 5.67909 5.87161 5.93731 5.98020 6.38070 6.69314 6.91123 6.91361 7.37664 7.47583 8.99025 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030392 B = 0.002173 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.070379 B =12880.587330 C =13187.126943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.038 3.962 10 H -0.007 1.007 11 C -0.083 4.083 12 C -0.121 4.121 13 C 0.150 3.850 14 H 0.062 0.938 15 N -0.708 5.708 16 C 0.507 3.493 17 O -0.584 6.584 18 C -0.095 4.095 19 C -0.087 4.087 20 C -0.071 4.071 21 C -0.132 4.132 22 C -0.061 4.061 23 C -0.153 4.153 24 C 0.532 3.468 25 O -0.553 6.553 26 O -0.502 6.502 27 C -0.058 4.058 28 C -0.105 4.105 29 H 0.259 0.741 30 H 0.024 0.976 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.416 0.584 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.433 0.567 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 -25.215 10.187 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.191 4.191 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.012 0.988 11 C -0.122 4.122 12 C -0.160 4.160 13 C 0.045 3.955 14 H 0.081 0.919 15 N -0.360 5.360 16 C 0.295 3.705 17 O -0.464 6.464 18 C -0.134 4.134 19 C -0.088 4.088 20 C -0.089 4.089 21 C -0.150 4.150 22 C -0.079 4.079 23 C -0.154 4.154 24 C 0.378 3.622 25 O -0.446 6.446 26 O -0.316 6.316 27 C -0.077 4.077 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.254 0.746 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.179 0.821 39 H 0.174 0.826 40 H 0.295 0.705 41 H 0.142 0.858 42 H 0.098 0.902 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.606 -24.984 9.981 27.295 hybrid contribution 0.302 0.978 -0.950 1.396 sum 4.909 -24.006 9.031 26.114 Atomic orbital electron populations 1.70118 1.07437 1.27212 1.51430 1.25820 0.95615 1.02647 0.94975 0.85659 0.78315 0.78976 0.78987 1.19629 1.21560 1.19194 1.21488 0.93199 0.91529 1.50410 0.92038 1.19406 0.92897 0.92767 0.92987 0.98830 1.21819 0.98763 0.93110 0.98508 1.22470 0.98800 0.95621 0.99072 1.21591 0.92368 0.87725 0.93818 0.91932 1.46004 1.19508 1.10536 1.59935 1.21222 0.87310 0.83205 0.78729 1.90715 1.22371 1.80705 1.52604 1.20762 0.98263 0.89420 1.04934 1.19429 0.99556 0.94953 0.94812 1.21692 0.92783 0.97253 0.97160 1.21513 1.00006 0.93373 1.00069 1.21698 0.94656 1.00268 0.91261 1.19134 1.05382 0.94835 0.96061 1.21038 0.75148 0.81098 0.84913 1.90878 1.40648 1.78943 1.34097 1.84503 1.65888 1.28547 1.52628 1.21156 0.96789 0.91836 0.97884 1.22669 0.97981 0.93600 1.00043 0.93227 0.95699 0.94490 0.90973 0.93724 0.74622 0.85376 0.84051 0.83279 0.82072 0.82648 0.70507 0.85785 0.90244 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.13 12.35 21.44 0.26 -53.86 16 2 C 0.01 0.44 5.33 84.65 0.45 0.89 16 3 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.53 -28.30 8.40 25.60 0.22 -28.08 16 8 H 0.06 3.14 7.78 -2.91 -0.02 3.12 16 9 C 0.04 1.90 2.80 -10.44 -0.03 1.87 16 10 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 11 C -0.08 -3.94 5.40 31.32 0.17 -3.77 16 12 C -0.12 -4.58 6.53 31.32 0.20 -4.38 16 13 C 0.15 5.22 3.16 46.07 0.15 5.37 16 14 H 0.06 2.47 7.67 -2.39 -0.02 2.46 16 15 N -0.71 -17.94 5.11 -437.44 -2.24 -20.18 16 16 C 0.51 13.17 7.82 87.66 0.69 13.86 16 17 O -0.58 -21.14 15.75 -3.03 -0.05 -21.19 16 18 C -0.09 -1.47 5.83 29.10 0.17 -1.30 16 19 C -0.09 -1.67 4.37 -19.90 -0.09 -1.76 16 20 C -0.07 -1.14 9.69 22.33 0.22 -0.92 16 21 C -0.13 -1.85 10.03 22.23 0.22 -1.63 16 22 C -0.06 -0.97 9.62 22.54 0.22 -0.76 16 23 C -0.15 -3.24 5.87 -20.10 -0.12 -3.36 16 24 C 0.53 11.49 8.27 70.33 0.58 12.07 16 25 O -0.55 -15.67 17.13 19.95 0.34 -15.33 16 26 O -0.50 -6.83 12.68 -56.29 -0.71 -7.54 16 27 C -0.06 -1.31 9.24 22.53 0.21 -1.10 16 28 C -0.10 -3.95 5.89 31.91 0.19 -3.76 16 29 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.02 1.28 7.94 -2.39 -0.02 1.27 16 31 H 0.04 1.82 7.83 -2.39 -0.02 1.80 16 32 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.42 7.54 8.53 -92.71 -0.79 6.74 16 35 H 0.13 1.42 8.08 -2.39 -0.02 1.41 16 36 H 0.14 1.22 8.08 -2.39 -0.02 1.20 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.16 1.79 7.61 -2.91 -0.02 1.77 16 40 H 0.43 2.02 9.11 -74.06 -0.67 1.34 16 41 H 0.12 2.95 7.65 -2.91 -0.02 2.92 16 42 H 0.08 2.72 7.93 -2.39 -0.02 2.70 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -77.39 367.23 2.65 -74.74 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.42 Total: 15.08 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 3.44 Total: -16.76 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.97 Total: -74.04 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.42 Total: -44.06 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -77.39 2.65 -74.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.849 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds