Wall clock time and date at job start Tue Mar 31 2020 11:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86806 * 120.00200 * 2 1 4 4 H 1.48504 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46699 * 299.99946 * 3 2 1 6 6 H 1.48505 * 109.46806 * 59.99861 * 3 2 1 7 7 C 1.38655 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00153 * 185.05567 * 9 7 2 11 11 C 1.38905 * 120.06783 * 354.46830 * 10 9 7 12 12 C 1.38075 * 119.93018 * 179.97438 * 11 10 9 13 13 C 1.38333 * 120.06978 * 0.02562 * 12 11 10 14 14 C 1.38285 * 120.13392 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.95924 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.47066 * 90.00216 * 15 14 13 17 17 C 1.34777 * 119.99558 * 179.97438 * 16 15 14 18 18 O 1.21270 * 120.00380 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99436 * 179.97438 * 17 16 15 20 20 H 1.08998 * 115.56376 * 34.22818 * 19 17 16 21 21 C 1.53177 * 117.56583 * 248.37866 * 19 17 16 22 22 C 1.52125 * 59.78137 * 252.59798 * 21 19 17 23 23 C 1.54028 * 121.47583 * 249.14553 * 22 21 19 24 24 C 1.55186 * 101.83024 * 195.70020 * 23 22 21 25 25 O 1.44456 * 103.63117 * 36.32603 * 24 23 22 26 26 C 1.43989 * 107.04775 * 320.43217 * 25 24 23 27 27 C 1.38115 * 120.07074 * 0.25818 * 14 13 12 28 28 H 0.97004 * 119.99770 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.03473 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96731 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.93123 * 180.02562 * 13 12 11 32 32 H 1.09000 * 109.47604 * 330.00024 * 15 14 13 33 33 H 1.09003 * 109.46652 * 209.99829 * 15 14 13 34 34 H 0.96998 * 120.00073 * 359.97438 * 16 15 14 35 35 H 1.09004 * 117.51797 * 145.17468 * 21 19 17 36 36 H 1.09002 * 117.52366 * 0.02687 * 21 19 17 37 37 H 1.09000 * 110.96007 * 313.83205 * 23 22 21 38 38 H 1.08995 * 110.96165 * 77.56823 * 23 22 21 39 39 H 1.08997 * 110.59079 * 277.79057 * 24 23 22 40 40 H 1.08994 * 110.59378 * 154.86170 * 24 23 22 41 41 H 1.09001 * 109.97581 * 266.94050 * 26 25 24 42 42 H 1.09004 * 109.97135 * 145.67247 * 26 25 24 43 43 H 1.08004 * 120.03540 * 179.72104 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0699 -3.5045 0.1086 11 6 3.4574 -3.4394 0.0952 12 6 4.2025 -4.5967 0.2048 13 6 3.5686 -5.8201 0.3274 14 6 2.1875 -5.8882 0.3412 15 6 1.5011 -7.2231 0.4743 16 7 1.2857 -7.5222 1.8923 17 6 0.6829 -8.6719 2.2544 18 8 0.3193 -9.4591 1.4067 19 6 0.4619 -8.9798 3.7130 20 1 0.2517 -8.1197 4.3487 21 6 1.2654 -10.1319 4.3240 22 6 -0.2237 -10.2934 4.0583 23 6 -1.2405 -10.3903 5.2112 24 6 -2.4943 -10.9447 4.4839 25 8 -1.9456 -11.8550 3.5056 26 6 -0.7572 -11.2387 2.9754 27 6 1.4366 -4.7346 0.2270 28 1 -0.4850 0.8401 0.0004 29 1 3.9528 -2.4846 -0.0010 30 1 5.2812 -4.5468 0.1939 31 1 4.1536 -6.7238 0.4134 32 1 2.1252 -7.9986 0.0302 33 1 0.5407 -7.1907 -0.0401 34 1 1.5769 -6.8927 2.5704 35 1 1.5836 -10.0294 5.3615 36 1 1.9546 -10.6673 3.6709 37 1 -0.8959 -11.0843 5.9778 38 1 -1.4404 -9.4077 5.6384 39 1 -3.0407 -10.1389 3.9938 40 1 -3.1392 -11.4767 5.1832 41 1 -1.0004 -10.6741 2.0753 42 1 -0.0126 -12.0013 2.7470 43 1 0.3580 -4.7889 0.2333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645680683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:18 Heat of formation + Delta-G solvation = -56.292225 kcal Electronic energy + Delta-G solvation = -25237.309417 eV Core-core repulsion = 21442.115588 eV Total energy + Delta-G solvation = -3795.193829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76430 -39.34574 -38.78011 -36.91565 -35.99404 -34.57033 -32.38116 -30.99732 -30.51283 -29.22015 -27.65870 -26.30655 -25.31225 -23.75683 -22.87038 -21.76672 -20.89828 -20.65800 -19.70081 -17.96448 -17.37145 -16.95845 -16.34735 -16.22062 -15.51346 -15.47553 -15.11455 -15.02898 -14.60341 -14.42493 -14.24204 -13.73997 -13.59720 -13.47747 -13.22001 -12.87421 -12.70998 -12.46678 -12.41758 -12.18217 -11.72109 -11.68487 -11.44152 -11.27115 -11.00566 -10.87245 -10.78420 -10.74077 -10.49494 -10.34234 -10.12387 -9.46520 -9.35526 -9.04572 -8.93794 -8.29191 -7.37867 -6.53451 -4.13006 1.84131 2.21648 2.35595 3.05484 3.08003 3.13690 3.16106 3.43838 3.77766 3.88854 4.04620 4.35463 4.40794 4.48716 4.65873 4.80773 4.90634 4.93027 5.02968 5.12508 5.16868 5.21953 5.32955 5.45709 5.48762 5.54301 5.62439 5.63970 5.68455 5.70679 5.79121 5.85327 6.00209 6.02955 6.20176 6.44737 6.50343 6.70339 6.76474 6.94959 7.13174 7.22374 7.30880 7.48926 7.66320 7.90711 8.17067 8.92015 9.60250 10.64315 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.002312 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.908364 B =12105.461996 C =12812.488397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.074 4.074 15 C 0.168 3.832 16 N -0.714 5.714 17 C 0.541 3.459 18 O -0.541 6.541 19 C -0.174 4.174 20 H 0.128 0.872 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.121 4.121 24 C 0.049 3.951 25 O -0.383 6.383 26 C 0.074 3.926 27 C -0.171 4.171 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -16.537 10.034 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.074 4.074 15 C 0.045 3.955 16 N -0.364 5.364 17 C 0.327 3.673 18 O -0.420 6.420 19 C -0.195 4.195 20 H 0.146 0.854 21 C -0.169 4.169 22 C -0.132 4.132 23 C -0.158 4.158 24 C -0.028 4.028 25 O -0.302 6.302 26 C -0.002 4.002 27 C -0.191 4.191 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.602 -17.070 9.306 19.507 hybrid contribution 0.877 1.657 0.411 1.919 sum 2.479 -15.413 9.716 18.388 Atomic orbital electron populations 1.70044 1.05987 1.27705 1.45751 1.25305 0.95854 0.98889 0.96434 0.85640 0.79123 0.80289 0.78334 1.19078 1.20071 1.20088 1.21377 0.91831 0.80727 1.53010 0.88961 1.83983 1.34301 1.11438 1.78200 1.19327 0.90263 0.88069 0.92688 1.21250 0.93837 0.99131 1.10245 1.20751 0.98593 0.92248 0.97828 1.20475 0.93314 0.97129 1.10552 1.19251 0.93499 0.92808 1.01877 1.20178 1.00213 0.93842 0.81262 1.46109 1.60124 1.21089 1.09082 1.19636 0.77198 0.81278 0.89169 1.90606 1.50863 1.47917 1.52566 1.22274 1.07682 0.94512 0.95071 0.85439 1.22917 0.93173 0.98691 1.02105 1.22150 0.94995 0.97284 0.98737 1.22651 0.94350 1.02430 0.96418 1.23514 0.95350 0.93317 0.90605 1.88908 1.40995 1.42816 1.57493 1.22967 0.86678 0.94872 0.95691 1.20081 0.99420 0.89831 1.09797 0.91961 0.85433 0.87260 0.87518 0.90867 0.90769 0.76069 0.87317 0.87776 0.89719 0.89877 0.92026 0.89027 0.88159 0.89912 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.18 -4.84 9.76 0.04 0.00 -4.84 16 10 C 0.15 3.44 6.65 -39.11 -0.26 3.18 16 11 C -0.23 -4.61 9.17 -39.39 -0.36 -4.97 16 12 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 13 C -0.20 -3.09 9.70 -39.53 -0.38 -3.47 16 14 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 15 C 0.17 2.36 5.80 -5.19 -0.03 2.33 16 16 N -0.71 -8.81 5.55 -61.47 -0.34 -9.15 16 17 C 0.54 6.81 7.61 -10.98 -0.08 6.72 16 18 O -0.54 -8.39 13.38 5.57 0.07 -8.31 16 19 C -0.17 -1.65 6.06 -92.11 -0.56 -2.21 16 20 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 21 C -0.13 -1.05 10.01 -27.09 -0.27 -1.32 16 22 C -0.13 -1.25 2.43 -154.68 -0.38 -1.62 16 23 C -0.12 -0.93 6.94 -25.04 -0.17 -1.11 16 24 C 0.05 0.44 7.73 38.31 0.30 0.74 16 25 O -0.38 -4.75 11.53 -35.23 -0.41 -5.15 16 26 C 0.07 0.88 6.56 37.33 0.24 1.12 16 27 C -0.17 -3.38 9.64 -39.40 -0.38 -3.76 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.40 4.45 8.46 -40.82 -0.35 4.11 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.42 5.54 -51.93 -0.29 1.13 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -31.39 361.97 -8.40 -39.78 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.83 Total: 8.37 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -3.09 Total: -17.17 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.42 Total: -33.03 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.33 Total: -18.30 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.39 -8.40 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645680683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.509 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds