Wall clock time and date at job start Tue Mar 31 2020 11:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86806 * 120.00200 * 2 1 4 4 H 1.48504 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46699 * 299.99946 * 3 2 1 6 6 H 1.48505 * 109.46806 * 59.99861 * 3 2 1 7 7 C 1.38655 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00153 * 185.05567 * 9 7 2 11 11 C 1.38905 * 120.06783 * 354.46830 * 10 9 7 12 12 C 1.38075 * 119.93018 * 179.97438 * 11 10 9 13 13 C 1.38333 * 120.06978 * 0.02562 * 12 11 10 14 14 C 1.38285 * 120.13392 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.95924 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.47066 * 90.00216 * 15 14 13 17 17 C 1.34777 * 119.99558 * 179.97438 * 16 15 14 18 18 O 1.21270 * 120.00380 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99436 * 179.97438 * 17 16 15 20 20 H 1.08998 * 115.56376 * 34.22818 * 19 17 16 21 21 C 1.53177 * 117.56583 * 248.37866 * 19 17 16 22 22 C 1.52125 * 59.78137 * 252.59798 * 21 19 17 23 23 C 1.54028 * 121.47583 * 249.14553 * 22 21 19 24 24 C 1.55186 * 101.83024 * 195.70020 * 23 22 21 25 25 O 1.44456 * 103.63117 * 36.32603 * 24 23 22 26 26 C 1.43989 * 107.04775 * 320.43217 * 25 24 23 27 27 C 1.38115 * 120.07074 * 0.25818 * 14 13 12 28 28 H 0.97004 * 119.99770 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.03473 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96731 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.93123 * 180.02562 * 13 12 11 32 32 H 1.09000 * 109.47604 * 330.00024 * 15 14 13 33 33 H 1.09003 * 109.46652 * 209.99829 * 15 14 13 34 34 H 0.96998 * 120.00073 * 359.97438 * 16 15 14 35 35 H 1.09004 * 117.51797 * 145.17468 * 21 19 17 36 36 H 1.09002 * 117.52366 * 0.02687 * 21 19 17 37 37 H 1.09000 * 110.96007 * 313.83205 * 23 22 21 38 38 H 1.08995 * 110.96165 * 77.56823 * 23 22 21 39 39 H 1.08997 * 110.59079 * 277.79057 * 24 23 22 40 40 H 1.08994 * 110.59378 * 154.86170 * 24 23 22 41 41 H 1.09001 * 109.97581 * 266.94050 * 26 25 24 42 42 H 1.09004 * 109.97135 * 145.67247 * 26 25 24 43 43 H 1.08004 * 120.03540 * 179.72104 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0699 -3.5045 0.1086 11 6 3.4574 -3.4394 0.0952 12 6 4.2025 -4.5967 0.2048 13 6 3.5686 -5.8201 0.3274 14 6 2.1875 -5.8882 0.3412 15 6 1.5011 -7.2231 0.4743 16 7 1.2857 -7.5222 1.8923 17 6 0.6829 -8.6719 2.2544 18 8 0.3193 -9.4591 1.4067 19 6 0.4619 -8.9798 3.7130 20 1 0.2517 -8.1197 4.3487 21 6 1.2654 -10.1319 4.3240 22 6 -0.2237 -10.2934 4.0583 23 6 -1.2405 -10.3903 5.2112 24 6 -2.4943 -10.9447 4.4839 25 8 -1.9456 -11.8550 3.5056 26 6 -0.7572 -11.2387 2.9754 27 6 1.4366 -4.7346 0.2270 28 1 -0.4850 0.8401 0.0004 29 1 3.9528 -2.4846 -0.0010 30 1 5.2812 -4.5468 0.1939 31 1 4.1536 -6.7238 0.4134 32 1 2.1252 -7.9986 0.0302 33 1 0.5407 -7.1907 -0.0401 34 1 1.5769 -6.8927 2.5704 35 1 1.5836 -10.0294 5.3615 36 1 1.9546 -10.6673 3.6709 37 1 -0.8959 -11.0843 5.9778 38 1 -1.4404 -9.4077 5.6384 39 1 -3.0407 -10.1389 3.9938 40 1 -3.1392 -11.4767 5.1832 41 1 -1.0004 -10.6741 2.0753 42 1 -0.0126 -12.0013 2.7470 43 1 0.3580 -4.7889 0.2333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645680683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:18 Heat of formation + Delta-G solvation = -77.106052 kcal Electronic energy + Delta-G solvation = -25238.211972 eV Core-core repulsion = 21442.115588 eV Total energy + Delta-G solvation = -3796.096384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64502 -40.85553 -39.85366 -38.48002 -36.85174 -35.77332 -34.29672 -32.32835 -31.25587 -30.79195 -28.59097 -27.64447 -27.02540 -24.71229 -23.57522 -23.27376 -22.42724 -21.56951 -20.55408 -19.57570 -18.89713 -18.16116 -17.28234 -17.05307 -16.83793 -16.61580 -16.36151 -16.17907 -16.07127 -15.78577 -15.51824 -15.29226 -14.79381 -14.41952 -14.32439 -14.01981 -13.94229 -13.74199 -13.50909 -13.33837 -13.13223 -13.04670 -12.58699 -12.36131 -12.35065 -12.28734 -12.08955 -11.98187 -11.51538 -11.23414 -11.14021 -10.93703 -10.82774 -10.32746 -10.12068 -9.75199 -9.04583 -8.48117 -6.16646 0.36792 0.69171 1.35579 1.42339 1.43384 1.53578 2.13530 2.18098 2.68150 2.83216 3.01181 3.15477 3.32730 3.37196 3.65362 3.73501 3.80417 3.93582 4.01425 4.08587 4.27470 4.29141 4.39574 4.47017 4.51253 4.51704 4.64947 4.71721 4.75182 4.82090 4.84485 4.90484 4.99851 5.00341 5.05988 5.09858 5.11269 5.24158 5.40018 5.61078 5.69224 5.70409 5.89665 6.00754 6.15241 6.50830 6.96903 7.18965 7.76974 8.75205 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.002312 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.908364 B =12105.461996 C =12812.488397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.234 4.234 12 C -0.069 4.069 13 C -0.168 4.168 14 C -0.058 4.058 15 C 0.174 3.826 16 N -0.709 5.709 17 C 0.537 3.463 18 O -0.574 6.574 19 C -0.178 4.178 20 H 0.150 0.850 21 C -0.110 4.110 22 C -0.142 4.142 23 C -0.111 4.111 24 C 0.038 3.962 25 O -0.407 6.407 26 C 0.073 3.927 27 C -0.182 4.182 28 H 0.272 0.728 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.413 0.587 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -17.970 12.019 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.173 1.173 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.254 4.254 12 C -0.087 4.087 13 C -0.187 4.187 14 C -0.059 4.059 15 C 0.051 3.949 16 N -0.360 5.360 17 C 0.325 3.675 18 O -0.455 6.455 19 C -0.199 4.199 20 H 0.168 0.832 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.038 4.038 25 O -0.327 6.327 26 C -0.003 4.003 27 C -0.202 4.202 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.249 0.751 35 H 0.157 0.843 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.527 -18.550 11.310 22.193 hybrid contribution 0.049 1.709 -0.224 1.724 sum 4.576 -16.841 11.086 20.675 Atomic orbital electron populations 1.70190 1.08072 1.28732 1.48937 1.26585 0.96816 1.02773 0.95907 0.84532 0.78347 0.74877 0.78478 1.17266 1.19578 1.19391 1.21865 0.92554 0.81313 1.53032 0.87866 1.83950 1.35978 1.12609 1.81389 1.19859 0.91658 0.87823 0.94439 1.21377 0.92975 1.00455 1.10547 1.21170 1.00453 0.91116 0.95960 1.20995 0.93000 0.98278 1.06396 1.19434 0.93988 0.92479 1.00006 1.20034 0.99655 0.92686 0.82560 1.46008 1.60203 1.21395 1.08379 1.20211 0.76228 0.80589 0.90458 1.90614 1.52030 1.48944 1.53908 1.22316 1.08870 0.95614 0.93108 0.83213 1.23060 0.91754 0.96441 1.03442 1.22184 0.96736 0.96723 0.98630 1.22660 0.92635 1.03701 0.95806 1.23769 0.96449 0.93137 0.90477 1.88876 1.41387 1.43950 1.58466 1.22817 0.86719 0.95033 0.95764 1.20212 0.99350 0.90205 1.10449 0.91873 0.86176 0.83310 0.83377 0.89449 0.92082 0.75082 0.84263 0.88215 0.88096 0.88110 0.92702 0.87002 0.91104 0.90269 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.76 13.67 21.61 0.30 -55.46 16 2 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 3 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 4 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.41 -23.27 9.49 67.92 0.64 -22.62 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 9 O -0.23 -13.60 9.76 -22.76 -0.22 -13.82 16 10 C 0.11 5.32 6.65 22.58 0.15 5.47 16 11 C -0.23 -9.46 9.17 22.39 0.21 -9.25 16 12 C -0.07 -2.10 10.04 22.25 0.22 -1.88 16 13 C -0.17 -4.59 9.70 22.30 0.22 -4.37 16 14 C -0.06 -1.80 5.25 -19.88 -0.10 -1.90 16 15 C 0.17 4.58 5.80 85.63 0.50 5.08 16 16 N -0.71 -16.11 5.55 -466.78 -2.59 -18.70 16 17 C 0.54 12.76 7.61 87.66 0.67 13.42 16 18 O -0.57 -17.70 13.38 -3.00 -0.04 -17.75 16 19 C -0.18 -2.92 6.06 -11.76 -0.07 -2.99 16 20 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 21 C -0.11 -1.38 10.01 30.36 0.30 -1.07 16 22 C -0.14 -2.41 2.43 -52.29 -0.13 -2.54 16 23 C -0.11 -1.39 6.94 31.69 0.22 -1.17 16 24 C 0.04 0.63 7.73 72.73 0.56 1.20 16 25 O -0.41 -10.04 11.53 -148.98 -1.72 -11.76 16 26 C 0.07 1.73 6.56 72.09 0.47 2.21 16 27 C -0.18 -7.34 9.64 22.39 0.22 -7.12 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.12 4.96 5.64 -2.91 -0.02 4.95 16 30 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 34 H 0.41 8.06 8.46 -92.71 -0.78 7.27 16 35 H 0.14 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 0.93 8.13 -2.39 -0.02 0.91 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 2.10 5.54 -2.39 -0.01 2.09 16 42 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -74.61 361.97 2.55 -72.06 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.26 Total: 30.01 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 4.54 Total: -28.38 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.29 Total: -74.16 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.98 Total: -43.33 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -74.61 2.55 -72.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645680683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.044 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds