Wall clock time and date at job start Tue Mar 31 2020 11:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86805 * 119.99540 * 2 1 4 4 H 1.48502 * 109.46940 * 269.99489 * 3 2 1 5 5 H 1.48497 * 109.47214 * 29.99970 * 3 2 1 6 6 H 1.48504 * 109.47273 * 150.00028 * 3 2 1 7 7 C 1.38651 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00502 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00088 * 180.02562 * 7 2 1 10 10 C 1.35754 * 117.00355 * 185.05761 * 9 7 2 11 11 C 1.38904 * 120.06564 * 354.47145 * 10 9 7 12 12 C 1.38079 * 119.92946 * 180.02562 * 11 10 9 13 13 C 1.38317 * 120.07004 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.14106 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.96701 * 179.97438 * 14 13 12 16 16 N 1.46491 * 109.47090 * 90.00282 * 15 14 13 17 17 C 1.34779 * 119.99893 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99922 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.56347 * 34.41407 * 19 17 16 21 21 C 1.53186 * 117.51734 * 248.63431 * 19 17 16 22 22 C 1.52113 * 117.52115 * 180.18993 * 19 17 16 23 23 C 1.53717 * 121.71503 * 356.28162 * 22 19 17 24 24 C 1.54690 * 103.69457 * 216.06497 * 23 22 19 25 25 O 1.44499 * 104.86859 * 23.84842 * 24 23 22 26 26 C 1.44638 * 105.46276 * 320.01570 * 25 24 23 27 27 C 1.38125 * 120.06229 * 359.67418 * 14 13 12 28 28 H 0.97002 * 120.00417 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.03500 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.96350 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.92870 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.47010 * 209.99816 * 15 14 13 33 33 H 1.08997 * 109.47156 * 329.99859 * 15 14 13 34 34 H 0.96997 * 120.00363 * 359.97438 * 16 15 14 35 35 H 1.08992 * 117.52710 * 359.97438 * 21 19 17 36 36 H 1.09003 * 117.51480 * 145.11054 * 21 19 17 37 37 H 1.09006 * 110.57832 * 334.62120 * 23 22 19 38 38 H 1.09001 * 110.57927 * 97.50988 * 23 22 19 39 39 H 1.09009 * 110.35971 * 142.69082 * 24 23 22 40 40 H 1.09001 * 110.36308 * 264.99036 * 24 23 22 41 41 H 1.08991 * 110.41976 * 280.88746 * 26 25 24 42 42 H 1.09001 * 110.41720 * 158.42382 * 26 25 24 43 43 H 1.08005 * 120.03001 * 180.32135 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1361 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4054 -0.1051 11 6 3.2236 -3.5745 -0.0923 12 6 3.8536 -4.7985 -0.1999 13 6 5.2301 -4.8612 -0.3197 14 6 5.9798 -3.6993 -0.3317 15 6 7.4793 -3.7723 -0.4619 16 7 7.8488 -3.7349 -1.8790 17 6 9.1466 -3.7887 -2.2387 18 8 10.0085 -3.8676 -1.3891 19 6 9.5267 -3.7509 -3.6965 20 1 8.8906 -3.1354 -4.3326 21 6 10.1173 -5.0256 -4.3073 22 6 11.0072 -3.8195 -4.0389 23 6 12.0891 -3.8389 -2.9471 24 6 13.2447 -3.0146 -3.5619 25 8 12.6119 -2.1636 -4.5433 26 6 11.6117 -2.9899 -5.1827 27 6 5.3549 -2.4716 -0.2307 28 1 -0.4851 0.8400 -0.0004 29 1 2.1487 -3.5261 0.0017 30 1 3.2709 -5.7078 -0.1896 31 1 5.7206 -5.8198 -0.4033 32 1 7.9305 -2.9244 0.0536 33 1 7.8379 -4.7006 -0.0173 34 1 7.1595 -3.6722 -2.5585 35 1 10.2311 -5.8910 -3.6545 36 1 9.8695 -5.2482 -5.3452 37 1 11.7228 -3.3651 -2.0362 38 1 12.4119 -4.8603 -2.7456 39 1 13.7308 -2.4120 -2.7945 40 1 13.9678 -3.6743 -4.0416 41 1 12.0743 -3.6429 -5.9227 42 1 10.8461 -2.3690 -5.6478 43 1 5.9405 -1.5642 -0.2453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645680684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:21 Heat of formation + Delta-G solvation = -53.327543 kcal Electronic energy + Delta-G solvation = -25285.526051 eV Core-core repulsion = 21490.460780 eV Total energy + Delta-G solvation = -3795.065270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.78420 -39.47507 -38.89238 -37.08356 -36.01919 -34.61974 -32.47682 -31.10527 -30.43001 -29.47536 -27.88303 -26.31518 -25.24349 -23.73143 -22.94689 -21.88362 -20.79168 -20.70057 -19.70855 -17.90663 -17.56068 -16.99440 -16.42739 -16.14144 -15.77469 -15.55318 -15.26025 -15.20380 -14.69361 -14.54792 -14.07316 -13.89918 -13.59013 -13.45809 -13.19414 -12.81547 -12.64921 -12.59783 -12.50990 -12.23416 -12.06823 -11.73951 -11.50147 -11.22018 -10.98579 -10.87213 -10.84287 -10.79476 -10.40488 -10.23559 -10.01512 -9.59757 -9.48993 -9.10164 -8.96082 -8.37475 -7.52539 -6.49465 -4.17024 1.75633 2.10584 2.33830 3.10729 3.17452 3.21200 3.35348 3.36964 3.72363 4.12724 4.17095 4.27602 4.37588 4.47330 4.60653 4.63429 4.83420 4.93407 5.00654 5.05788 5.13925 5.17058 5.26215 5.27460 5.36938 5.44165 5.52627 5.57330 5.59209 5.69898 5.73573 5.78222 5.96914 6.10167 6.10971 6.37383 6.43636 6.50190 6.63022 6.95028 7.06377 7.16141 7.41926 7.49079 7.69402 7.93997 8.14770 8.85318 9.45953 10.57848 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.002523 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.174454 B =11094.894207 C =12087.476236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.157 3.843 11 C -0.212 4.212 12 C -0.077 4.077 13 C -0.186 4.186 14 C -0.076 4.076 15 C 0.168 3.832 16 N -0.716 5.716 17 C 0.543 3.457 18 O -0.540 6.540 19 C -0.173 4.173 20 H 0.127 0.873 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.128 4.128 24 C 0.044 3.956 25 O -0.374 6.374 26 C 0.082 3.918 27 C -0.172 4.172 28 H 0.280 0.720 29 H 0.134 0.866 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.405 0.595 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.753 -10.040 -8.962 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.104 3.896 11 C -0.231 4.231 12 C -0.096 4.096 13 C -0.206 4.206 14 C -0.076 4.076 15 C 0.045 3.955 16 N -0.366 5.366 17 C 0.329 3.671 18 O -0.418 6.418 19 C -0.195 4.195 20 H 0.145 0.855 21 C -0.170 4.170 22 C -0.131 4.131 23 C -0.166 4.166 24 C -0.033 4.033 25 O -0.292 6.292 26 C 0.005 3.995 27 C -0.192 4.192 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.288 -9.483 -8.341 23.898 hybrid contribution -0.588 0.448 -0.271 0.787 sum 19.700 -9.035 -8.613 23.322 Atomic orbital electron populations 1.69638 1.05588 1.28634 1.47579 1.24469 0.95028 0.98885 0.95526 0.86185 0.80360 0.81374 0.79024 1.19826 1.20697 1.18327 1.20760 0.76773 0.96668 1.52517 0.87581 1.83579 1.22699 1.25569 1.80138 1.19059 0.91549 0.85646 0.93321 1.21375 1.01324 0.91921 1.08501 1.20806 0.94156 0.96848 0.97747 1.20542 0.93849 0.96725 1.09473 1.19256 0.93329 0.93014 1.02034 1.20160 0.91355 1.02530 0.81417 1.46117 1.07296 1.74201 1.08999 1.19614 0.82427 0.75801 0.89246 1.90588 1.48576 1.50219 1.52423 1.22230 0.97689 1.04445 0.95088 0.85500 1.22936 1.00859 0.91154 1.02065 1.22176 0.90998 1.00966 0.98914 1.22721 0.92819 1.01544 0.99466 1.23524 0.95234 0.93300 0.91196 1.89173 1.51735 1.35102 1.53240 1.22807 0.90860 0.92875 0.92974 1.20083 0.92004 0.97208 1.09857 0.90936 0.84804 0.86952 0.87318 0.90814 0.90843 0.76080 0.87800 0.87325 0.86710 0.90557 0.89064 0.92542 0.91360 0.88885 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.76 13.96 55.48 0.77 -23.99 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.21 28.62 -169.99 -4.86 16.35 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.39 -10.69 9.95 30.88 0.31 -10.39 16 8 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16 9 O -0.21 -5.46 8.59 0.04 0.00 -5.46 16 10 C 0.16 3.41 6.65 -39.11 -0.26 3.15 16 11 C -0.21 -4.29 9.17 -39.39 -0.36 -4.65 16 12 C -0.08 -1.29 10.04 -39.61 -0.40 -1.68 16 13 C -0.19 -2.82 9.70 -39.54 -0.38 -3.21 16 14 C -0.08 -1.17 5.25 -104.65 -0.55 -1.72 16 15 C 0.17 2.23 5.79 -5.20 -0.03 2.20 16 16 N -0.72 -8.42 5.55 -61.48 -0.34 -8.76 16 17 C 0.54 6.60 7.61 -10.98 -0.08 6.52 16 18 O -0.54 -8.06 13.34 5.56 0.07 -7.99 16 19 C -0.17 -1.60 6.06 -92.12 -0.56 -2.15 16 20 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.13 -0.97 10.03 -27.00 -0.27 -1.24 16 22 C -0.13 -1.17 2.51 -154.60 -0.39 -1.56 16 23 C -0.13 -1.28 5.96 -25.47 -0.15 -1.44 16 24 C 0.04 0.40 7.65 38.05 0.29 0.69 16 25 O -0.37 -4.17 11.65 -35.23 -0.41 -4.58 16 26 C 0.08 0.69 7.44 37.51 0.28 0.97 16 27 C -0.17 -3.17 9.65 -39.40 -0.38 -3.55 16 28 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 30 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.40 4.22 8.46 -40.82 -0.35 3.87 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 1.45 5.48 -51.93 -0.28 1.17 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 43 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -30.58 360.76 -8.20 -38.78 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.84 Total: 6.59 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -3.03 Total: -16.37 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.43 Total: -32.75 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.34 Total: -18.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.86 Total: 16.35 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.58 -8.20 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645680684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.546 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds