Wall clock time and date at job start Tue Mar 31 2020 11:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86805 * 119.99540 * 2 1 4 4 H 1.48502 * 109.46940 * 269.99489 * 3 2 1 5 5 H 1.48497 * 109.47214 * 29.99970 * 3 2 1 6 6 H 1.48504 * 109.47273 * 150.00028 * 3 2 1 7 7 C 1.38651 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00502 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00088 * 180.02562 * 7 2 1 10 10 C 1.35754 * 117.00355 * 185.05761 * 9 7 2 11 11 C 1.38904 * 120.06564 * 354.47145 * 10 9 7 12 12 C 1.38079 * 119.92946 * 180.02562 * 11 10 9 13 13 C 1.38317 * 120.07004 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.14106 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.96701 * 179.97438 * 14 13 12 16 16 N 1.46491 * 109.47090 * 90.00282 * 15 14 13 17 17 C 1.34779 * 119.99893 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99922 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.56347 * 34.41407 * 19 17 16 21 21 C 1.53186 * 117.51734 * 248.63431 * 19 17 16 22 22 C 1.52113 * 117.52115 * 180.18993 * 19 17 16 23 23 C 1.53717 * 121.71503 * 356.28162 * 22 19 17 24 24 C 1.54690 * 103.69457 * 216.06497 * 23 22 19 25 25 O 1.44499 * 104.86859 * 23.84842 * 24 23 22 26 26 C 1.44638 * 105.46276 * 320.01570 * 25 24 23 27 27 C 1.38125 * 120.06229 * 359.67418 * 14 13 12 28 28 H 0.97002 * 120.00417 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.03500 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.96350 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.92870 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.47010 * 209.99816 * 15 14 13 33 33 H 1.08997 * 109.47156 * 329.99859 * 15 14 13 34 34 H 0.96997 * 120.00363 * 359.97438 * 16 15 14 35 35 H 1.08992 * 117.52710 * 359.97438 * 21 19 17 36 36 H 1.09003 * 117.51480 * 145.11054 * 21 19 17 37 37 H 1.09006 * 110.57832 * 334.62120 * 23 22 19 38 38 H 1.09001 * 110.57927 * 97.50988 * 23 22 19 39 39 H 1.09009 * 110.35971 * 142.69082 * 24 23 22 40 40 H 1.09001 * 110.36308 * 264.99036 * 24 23 22 41 41 H 1.08991 * 110.41976 * 280.88746 * 26 25 24 42 42 H 1.09001 * 110.41720 * 158.42382 * 26 25 24 43 43 H 1.08005 * 120.03001 * 180.32135 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1361 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4054 -0.1051 11 6 3.2236 -3.5745 -0.0923 12 6 3.8536 -4.7985 -0.1999 13 6 5.2301 -4.8612 -0.3197 14 6 5.9798 -3.6993 -0.3317 15 6 7.4793 -3.7723 -0.4619 16 7 7.8488 -3.7349 -1.8790 17 6 9.1466 -3.7887 -2.2387 18 8 10.0085 -3.8676 -1.3891 19 6 9.5267 -3.7509 -3.6965 20 1 8.8906 -3.1354 -4.3326 21 6 10.1173 -5.0256 -4.3073 22 6 11.0072 -3.8195 -4.0389 23 6 12.0891 -3.8389 -2.9471 24 6 13.2447 -3.0146 -3.5619 25 8 12.6119 -2.1636 -4.5433 26 6 11.6117 -2.9899 -5.1827 27 6 5.3549 -2.4716 -0.2307 28 1 -0.4851 0.8400 -0.0004 29 1 2.1487 -3.5261 0.0017 30 1 3.2709 -5.7078 -0.1896 31 1 5.7206 -5.8198 -0.4033 32 1 7.9305 -2.9244 0.0536 33 1 7.8379 -4.7006 -0.0173 34 1 7.1595 -3.6722 -2.5585 35 1 10.2311 -5.8910 -3.6545 36 1 9.8695 -5.2482 -5.3452 37 1 11.7228 -3.3651 -2.0362 38 1 12.4119 -4.8603 -2.7456 39 1 13.7308 -2.4120 -2.7945 40 1 13.9678 -3.6743 -4.0416 41 1 12.0743 -3.6429 -5.9227 42 1 10.8461 -2.3690 -5.6478 43 1 5.9405 -1.5642 -0.2453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645680684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:20 Heat of formation + Delta-G solvation = -73.071584 kcal Electronic energy + Delta-G solvation = -25286.382217 eV Core-core repulsion = 21490.460780 eV Total energy + Delta-G solvation = -3795.921436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59952 -40.96148 -39.86897 -38.59055 -36.80060 -35.74972 -34.46720 -32.37067 -31.24894 -30.97388 -28.64126 -27.54888 -26.99233 -24.60875 -23.64944 -23.32882 -22.28814 -21.54096 -20.52226 -19.69259 -19.01648 -18.07003 -17.28539 -16.90363 -16.88236 -16.74921 -16.57600 -16.17915 -15.93403 -15.70795 -15.66335 -15.40688 -14.82661 -14.50550 -14.31259 -14.22165 -13.89383 -13.82565 -13.50206 -13.28157 -13.19833 -13.10606 -12.58678 -12.49239 -12.42261 -12.39211 -11.95919 -11.88062 -11.46670 -11.34143 -11.15340 -10.93434 -10.68655 -10.47622 -10.11072 -9.78551 -9.14105 -8.51512 -6.24321 0.33025 0.62952 1.30857 1.33710 1.46741 1.50401 2.16721 2.26202 2.67092 2.76999 3.00434 3.05955 3.10476 3.47021 3.60754 3.72003 3.82034 3.94714 4.03832 4.11780 4.24991 4.28781 4.39433 4.47536 4.49893 4.52399 4.63366 4.67854 4.70942 4.76140 4.83092 4.87301 4.90970 4.98723 5.07524 5.16782 5.23373 5.35643 5.51633 5.61009 5.67036 5.73496 5.83528 5.87631 6.17532 6.53353 6.83036 7.22654 7.56792 8.59854 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.002523 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.174454 B =11094.894207 C =12087.476236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.398 4.398 8 H 0.084 0.916 9 O -0.245 6.245 10 C 0.119 3.881 11 C -0.228 4.228 12 C -0.073 4.073 13 C -0.158 4.158 14 C -0.061 4.061 15 C 0.175 3.825 16 N -0.711 5.711 17 C 0.539 3.461 18 O -0.571 6.571 19 C -0.184 4.184 20 H 0.145 0.855 21 C -0.108 4.108 22 C -0.141 4.141 23 C -0.129 4.129 24 C 0.044 3.956 25 O -0.403 6.403 26 C 0.080 3.920 27 C -0.171 4.171 28 H 0.285 0.715 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.199 -11.979 -10.548 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.102 0.898 9 O -0.153 6.153 10 C 0.071 3.929 11 C -0.247 4.247 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.061 4.061 15 C 0.051 3.949 16 N -0.362 5.362 17 C 0.327 3.673 18 O -0.451 6.451 19 C -0.205 4.205 20 H 0.163 0.837 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.166 4.166 24 C -0.033 4.033 25 O -0.322 6.322 26 C 0.004 3.996 27 C -0.191 4.191 28 H 0.094 0.906 29 H 0.128 0.872 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.249 0.751 35 H 0.119 0.881 36 H 0.156 0.844 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.751 -11.462 -9.944 27.347 hybrid contribution -1.117 0.727 0.220 1.351 sum 21.634 -10.734 -9.724 26.035 Atomic orbital electron populations 1.69718 1.06835 1.29592 1.50079 1.25234 0.95833 1.02029 0.95590 0.85261 0.78750 0.77688 0.79293 1.18997 1.19329 1.18957 1.20704 0.78006 0.96153 1.52593 0.89831 1.83524 1.21307 1.27430 1.83047 1.19575 0.92917 0.85252 0.95203 1.21411 1.00436 0.93275 1.09625 1.21151 0.95226 0.96404 0.96328 1.21030 0.93108 0.98207 1.05340 1.19468 0.94607 0.91984 1.00063 1.20030 0.89296 1.02944 0.82585 1.46026 1.07669 1.74139 1.08403 1.20137 0.81907 0.74837 0.90401 1.90597 1.49332 1.51550 1.53651 1.22295 0.98219 1.06603 0.93341 0.83703 1.23060 0.98224 0.89921 1.03349 1.22247 0.90542 1.02534 0.98821 1.22621 0.93699 1.01574 0.98713 1.23596 0.95212 0.93310 0.91136 1.89136 1.52628 1.36603 1.53826 1.22988 0.90700 0.93022 0.92898 1.20271 0.90626 0.98822 1.09391 0.90563 0.87172 0.83747 0.83250 0.91623 0.89538 0.75131 0.88094 0.84393 0.89736 0.90024 0.89186 0.90588 0.89263 0.88029 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.24 13.96 21.61 0.30 -53.94 16 2 C 0.01 0.67 5.49 84.83 0.47 1.14 16 3 Si 0.97 44.97 28.62 68.60 1.96 46.93 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.40 -22.91 9.95 67.92 0.68 -22.24 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 9 O -0.25 -12.98 8.59 -22.78 -0.20 -13.18 16 10 C 0.12 5.32 6.65 22.58 0.15 5.47 16 11 C -0.23 -9.34 9.17 22.39 0.21 -9.14 16 12 C -0.07 -2.24 10.04 22.25 0.22 -2.02 16 13 C -0.16 -4.12 9.70 22.30 0.22 -3.90 16 14 C -0.06 -1.70 5.25 -19.88 -0.10 -1.81 16 15 C 0.17 4.14 5.79 85.63 0.50 4.64 16 16 N -0.71 -14.77 5.55 -466.80 -2.59 -17.36 16 17 C 0.54 11.96 7.61 87.66 0.67 12.63 16 18 O -0.57 -16.39 13.34 -3.03 -0.04 -16.43 16 19 C -0.18 -2.86 6.06 -11.77 -0.07 -2.94 16 20 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.11 -1.19 10.03 30.42 0.30 -0.88 16 22 C -0.14 -2.19 2.51 -52.24 -0.13 -2.32 16 23 C -0.13 -2.42 5.96 31.41 0.19 -2.24 16 24 C 0.04 0.74 7.65 72.56 0.56 1.30 16 25 O -0.40 -8.40 11.65 -148.98 -1.74 -10.14 16 26 C 0.08 1.14 7.44 72.21 0.54 1.68 16 27 C -0.17 -6.19 9.65 22.39 0.22 -5.97 16 28 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.11 5.01 5.64 -2.91 -0.02 5.00 16 30 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 33 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 34 H 0.41 7.31 8.46 -92.71 -0.78 6.53 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 2.14 5.48 -2.38 -0.01 2.13 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16 43 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -70.28 360.76 2.55 -67.73 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.26 Total: 22.99 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 4.59 Total: -26.61 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -2.29 Total: -71.30 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.97 Total: -39.75 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.96 Total: 46.93 kcal Total: -70.28 2.55 -67.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645680684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.341 kcal (2) G-P(sol) polarization free energy of solvation -70.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds