Wall clock time and date at job start Tue Mar 31 2020 11:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86802 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47709 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47157 * 300.00300 * 3 2 1 6 6 H 1.48509 * 109.46883 * 59.99914 * 3 2 1 7 7 C 1.38651 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08012 * 120.00115 * 179.72725 * 7 2 1 9 9 O 1.34831 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99967 * 174.93283 * 9 7 2 11 11 C 1.38904 * 120.06760 * 5.32638 * 10 9 7 12 12 C 1.38081 * 119.92831 * 179.78977 * 11 10 9 13 13 C 1.38325 * 120.06566 * 0.48357 * 12 11 10 14 14 C 1.38276 * 120.14372 * 359.74383 * 13 12 11 15 15 C 1.50695 * 119.97099 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47116 * 270.02726 * 15 14 13 17 17 C 1.34780 * 119.99752 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00154 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99799 * 179.97438 * 17 16 15 20 20 H 1.08997 * 115.56342 * 9.57578 * 19 17 16 21 21 C 1.53177 * 117.52027 * 155.34861 * 19 17 16 22 22 C 1.52131 * 117.51985 * 223.80597 * 19 17 16 23 23 C 1.54036 * 121.47506 * 141.71949 * 22 19 17 24 24 C 1.55187 * 101.83094 * 195.69810 * 23 22 19 25 25 O 1.44453 * 103.62913 * 36.33015 * 24 23 22 26 26 C 1.43992 * 107.04628 * 320.42742 * 25 24 23 27 27 C 1.38122 * 120.06629 * 0.02562 * 14 13 12 28 28 H 0.97001 * 120.00060 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.03665 * 0.02562 * 11 10 9 30 30 H 1.07993 * 119.96800 * 180.23022 * 12 11 10 31 31 H 1.08007 * 119.93021 * 179.72768 * 13 12 11 32 32 H 1.09006 * 109.46946 * 30.02541 * 15 14 13 33 33 H 1.09003 * 109.47496 * 150.02150 * 15 14 13 34 34 H 0.96999 * 120.00341 * 359.97438 * 16 15 14 35 35 H 1.09000 * 117.52175 * 214.85082 * 21 19 17 36 36 H 1.08999 * 117.52120 * 0.02562 * 21 19 17 37 37 H 1.09003 * 110.95671 * 313.83677 * 23 22 19 38 38 H 1.09002 * 110.95885 * 77.56252 * 23 22 19 39 39 H 1.08996 * 110.59245 * 277.78664 * 24 23 22 40 40 H 1.08999 * 110.71733 * 154.92466 * 24 23 22 41 41 H 1.09003 * 109.97507 * 266.94059 * 26 25 24 42 42 H 1.08999 * 110.00189 * 145.69005 * 26 25 24 43 43 H 1.08001 * 120.03433 * 179.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0087 -1.2007 0.0005 8 1 3.0889 -1.2008 -0.0039 9 8 1.3346 -2.3684 0.0005 10 6 2.0700 -3.5046 -0.1058 11 6 3.4574 -3.4390 -0.0968 12 6 4.2025 -4.5968 -0.2008 13 6 3.5687 -5.8201 -0.3237 14 6 2.1877 -5.8883 -0.3377 15 6 1.5012 -7.2231 -0.4724 16 7 1.2865 -7.5209 -1.8906 17 6 0.6847 -8.6707 -2.2541 18 8 0.3205 -9.4587 -1.4072 19 6 0.4633 -8.9768 -3.7130 20 1 0.9576 -8.3050 -4.4148 21 6 0.3320 -10.4490 -4.1154 22 6 -0.8910 -9.5412 -4.1152 23 6 -1.5797 -9.1212 -5.4275 24 6 -3.0350 -9.6061 -5.1923 25 8 -3.2508 -9.3652 -3.7845 26 6 -2.0307 -9.7150 -3.1045 27 6 1.4367 -4.7342 -0.2293 28 1 -0.4850 0.8401 0.0004 29 1 3.9529 -2.4838 -0.0049 30 1 5.2813 -4.5469 -0.1902 31 1 4.1537 -6.7240 -0.4093 32 1 2.1251 -7.9990 -0.0286 33 1 0.5405 -7.1911 0.0417 34 1 1.5774 -6.8905 -2.5680 35 1 0.7392 -10.7451 -5.0821 36 1 0.4053 -11.1956 -3.3247 37 1 -1.5453 -8.0394 -5.5569 38 1 -1.1329 -9.6290 -6.2822 39 1 -3.1262 -10.6685 -5.4179 40 1 -3.7363 -9.0263 -5.7924 41 1 -2.0755 -10.7510 -2.7684 42 1 -1.8762 -9.0537 -2.2519 43 1 0.3581 -4.7880 -0.2407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645680685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:24 Heat of formation + Delta-G solvation = -59.587963 kcal Electronic energy + Delta-G solvation = -25325.266599 eV Core-core repulsion = 21529.929856 eV Total energy + Delta-G solvation = -3795.336743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73628 -39.34968 -38.81754 -36.91453 -35.97203 -34.51603 -32.36329 -30.97433 -30.54278 -29.19764 -27.70680 -26.38929 -25.30131 -23.58608 -23.07016 -21.74461 -20.86082 -20.56885 -19.65594 -17.90239 -17.33865 -16.98845 -16.54243 -16.21942 -15.63848 -15.36542 -15.13608 -14.95912 -14.51533 -14.45647 -14.26958 -13.75267 -13.62124 -13.45853 -13.12500 -12.85098 -12.64580 -12.48017 -12.43225 -12.18094 -11.78501 -11.70487 -11.42816 -11.27896 -10.98789 -10.85172 -10.74420 -10.69568 -10.48091 -10.40111 -9.90322 -9.81006 -9.43376 -9.02613 -8.92097 -8.27853 -7.36108 -6.51500 -4.11129 1.86136 2.23423 2.30946 3.07070 3.09314 3.15040 3.21087 3.50628 3.73624 3.90415 4.01831 4.33410 4.44484 4.50437 4.61452 4.81475 4.87177 4.91581 5.04632 5.10461 5.12325 5.23602 5.37605 5.41338 5.49993 5.51163 5.52718 5.62706 5.69442 5.70268 5.80219 5.82070 5.88878 6.04626 6.22165 6.42352 6.52098 6.62669 6.78392 6.96618 7.15130 7.23980 7.32722 7.51575 7.68139 7.92512 8.18278 8.93804 9.62211 10.66235 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002587 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.058244 B =10819.994533 C =11998.321679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.151 3.849 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.074 4.074 15 C 0.168 3.832 16 N -0.714 5.714 17 C 0.540 3.460 18 O -0.545 6.545 19 C -0.173 4.173 20 H 0.124 0.876 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.122 4.122 24 C 0.048 3.952 25 O -0.377 6.377 26 C 0.086 3.914 27 C -0.171 4.171 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.404 0.596 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -17.161 -10.709 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.074 4.074 15 C 0.045 3.955 16 N -0.364 5.364 17 C 0.326 3.674 18 O -0.423 6.423 19 C -0.194 4.194 20 H 0.142 0.858 21 C -0.164 4.164 22 C -0.134 4.134 23 C -0.159 4.159 24 C -0.028 4.028 25 O -0.296 6.296 26 C 0.010 3.990 27 C -0.191 4.191 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.924 -17.410 -9.945 20.071 hybrid contribution 1.070 1.282 -0.404 1.718 sum 1.994 -16.128 -10.349 19.266 Atomic orbital electron populations 1.70043 1.05976 1.27697 1.45718 1.25302 0.95851 0.98876 0.96448 0.85643 0.79112 0.80313 0.78327 1.19092 1.20092 1.20079 1.21377 0.91820 0.80738 1.53025 0.88974 1.83986 1.34293 1.11428 1.78199 1.19324 0.90254 0.88072 0.92681 1.21251 0.93838 0.99107 1.10294 1.20746 0.98577 0.92244 0.97866 1.20473 0.93313 0.97135 1.10579 1.19252 0.93496 0.92807 1.01879 1.20174 1.00202 0.93846 0.81244 1.46068 1.60391 1.20903 1.09083 1.19550 0.77284 0.81332 0.89212 1.90690 1.51097 1.48042 1.52458 1.22263 1.01992 0.99858 0.95290 0.85788 1.23030 0.98618 0.91292 1.03434 1.22178 0.89661 1.03727 0.97796 1.22679 0.95508 1.02521 0.95206 1.23542 0.95697 1.00321 0.83251 1.88967 1.34332 1.87715 1.18552 1.22538 0.81162 1.01236 0.94095 1.20092 0.99455 0.89833 1.09704 0.91962 0.85432 0.87270 0.87523 0.90869 0.90793 0.76102 0.87485 0.87149 0.89595 0.89739 0.92057 0.88795 0.91416 0.88920 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.39 -10.71 9.49 30.88 0.29 -10.42 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 9 O -0.18 -4.88 9.76 0.04 0.00 -4.88 16 10 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 11 C -0.23 -4.66 9.17 -39.39 -0.36 -5.02 16 12 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 13 C -0.20 -3.14 9.70 -39.54 -0.38 -3.52 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.77 16 15 C 0.17 2.42 5.80 -5.20 -0.03 2.39 16 16 N -0.71 -9.15 5.55 -61.47 -0.34 -9.49 16 17 C 0.54 7.01 6.93 -10.98 -0.08 6.94 16 18 O -0.54 -8.65 15.01 5.56 0.08 -8.57 16 19 C -0.17 -1.69 6.07 -92.12 -0.56 -2.24 16 20 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.13 -1.05 9.83 -26.99 -0.27 -1.31 16 22 C -0.13 -1.27 2.42 -154.60 -0.37 -1.65 16 23 C -0.12 -0.94 6.94 -25.03 -0.17 -1.11 16 24 C 0.05 0.41 7.73 38.32 0.30 0.71 16 25 O -0.38 -4.73 11.53 -35.23 -0.41 -5.14 16 26 C 0.09 1.03 6.67 37.32 0.25 1.28 16 27 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.40 4.63 8.46 -40.82 -0.35 4.29 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 1.02 7.89 -51.93 -0.41 0.61 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.47 8.13 -51.93 -0.42 0.04 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.30 6.73 -51.93 -0.35 0.95 16 43 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -31.88 363.76 -8.39 -40.27 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.88 Total: 8.38 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -3.07 Total: -17.05 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.42 Total: -33.54 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.32 Total: -18.58 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.88 -8.39 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645680685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.321 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds