Wall clock time and date at job start Tue Mar 31 2020 11:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86802 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47709 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47157 * 300.00300 * 3 2 1 6 6 H 1.48509 * 109.46883 * 59.99914 * 3 2 1 7 7 C 1.38651 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08012 * 120.00115 * 179.72725 * 7 2 1 9 9 O 1.34831 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99967 * 174.93283 * 9 7 2 11 11 C 1.38904 * 120.06760 * 5.32638 * 10 9 7 12 12 C 1.38081 * 119.92831 * 179.78977 * 11 10 9 13 13 C 1.38325 * 120.06566 * 0.48357 * 12 11 10 14 14 C 1.38276 * 120.14372 * 359.74383 * 13 12 11 15 15 C 1.50695 * 119.97099 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47116 * 270.02726 * 15 14 13 17 17 C 1.34780 * 119.99752 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00154 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99799 * 179.97438 * 17 16 15 20 20 H 1.08997 * 115.56342 * 9.57578 * 19 17 16 21 21 C 1.53177 * 117.52027 * 155.34861 * 19 17 16 22 22 C 1.52131 * 117.51985 * 223.80597 * 19 17 16 23 23 C 1.54036 * 121.47506 * 141.71949 * 22 19 17 24 24 C 1.55187 * 101.83094 * 195.69810 * 23 22 19 25 25 O 1.44453 * 103.62913 * 36.33015 * 24 23 22 26 26 C 1.43992 * 107.04628 * 320.42742 * 25 24 23 27 27 C 1.38122 * 120.06629 * 0.02562 * 14 13 12 28 28 H 0.97001 * 120.00060 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.03665 * 0.02562 * 11 10 9 30 30 H 1.07993 * 119.96800 * 180.23022 * 12 11 10 31 31 H 1.08007 * 119.93021 * 179.72768 * 13 12 11 32 32 H 1.09006 * 109.46946 * 30.02541 * 15 14 13 33 33 H 1.09003 * 109.47496 * 150.02150 * 15 14 13 34 34 H 0.96999 * 120.00341 * 359.97438 * 16 15 14 35 35 H 1.09000 * 117.52175 * 214.85082 * 21 19 17 36 36 H 1.08999 * 117.52120 * 0.02562 * 21 19 17 37 37 H 1.09003 * 110.95671 * 313.83677 * 23 22 19 38 38 H 1.09002 * 110.95885 * 77.56252 * 23 22 19 39 39 H 1.08996 * 110.59245 * 277.78664 * 24 23 22 40 40 H 1.08999 * 110.71733 * 154.92466 * 24 23 22 41 41 H 1.09003 * 109.97507 * 266.94059 * 26 25 24 42 42 H 1.08999 * 110.00189 * 145.69005 * 26 25 24 43 43 H 1.08001 * 120.03433 * 179.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0087 -1.2007 0.0005 8 1 3.0889 -1.2008 -0.0039 9 8 1.3346 -2.3684 0.0005 10 6 2.0700 -3.5046 -0.1058 11 6 3.4574 -3.4390 -0.0968 12 6 4.2025 -4.5968 -0.2008 13 6 3.5687 -5.8201 -0.3237 14 6 2.1877 -5.8883 -0.3377 15 6 1.5012 -7.2231 -0.4724 16 7 1.2865 -7.5209 -1.8906 17 6 0.6847 -8.6707 -2.2541 18 8 0.3205 -9.4587 -1.4072 19 6 0.4633 -8.9768 -3.7130 20 1 0.9576 -8.3050 -4.4148 21 6 0.3320 -10.4490 -4.1154 22 6 -0.8910 -9.5412 -4.1152 23 6 -1.5797 -9.1212 -5.4275 24 6 -3.0350 -9.6061 -5.1923 25 8 -3.2508 -9.3652 -3.7845 26 6 -2.0307 -9.7150 -3.1045 27 6 1.4367 -4.7342 -0.2293 28 1 -0.4850 0.8401 0.0004 29 1 3.9529 -2.4838 -0.0049 30 1 5.2813 -4.5469 -0.1902 31 1 4.1537 -6.7240 -0.4093 32 1 2.1251 -7.9990 -0.0286 33 1 0.5405 -7.1911 0.0417 34 1 1.5774 -6.8905 -2.5680 35 1 0.7392 -10.7451 -5.0821 36 1 0.4053 -11.1956 -3.3247 37 1 -1.5453 -8.0394 -5.5569 38 1 -1.1329 -9.6290 -6.2822 39 1 -3.1262 -10.6685 -5.4179 40 1 -3.7363 -9.0263 -5.7924 41 1 -2.0755 -10.7510 -2.7684 42 1 -1.8762 -9.0537 -2.2519 43 1 0.3581 -4.7880 -0.2407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645680685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:23 Heat of formation + Delta-G solvation = -81.056976 kcal Electronic energy + Delta-G solvation = -25326.197565 eV Core-core repulsion = 21529.929856 eV Total energy + Delta-G solvation = -3796.267709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63290 -40.86457 -39.92829 -38.50013 -36.86422 -35.74842 -34.29983 -32.32939 -31.28766 -30.79771 -28.61557 -27.73612 -27.08408 -24.59049 -23.75852 -23.27717 -22.41793 -21.46580 -20.56289 -19.56105 -18.88472 -18.15687 -17.47997 -17.07376 -16.81157 -16.71234 -16.47006 -16.10509 -15.96745 -15.79527 -15.52854 -15.34520 -14.84748 -14.53322 -14.35714 -13.95764 -13.79004 -13.75097 -13.50697 -13.31978 -13.23162 -13.05664 -12.59881 -12.44146 -12.36467 -12.29289 -12.08980 -11.98656 -11.44890 -11.25353 -11.18227 -10.88286 -10.80192 -10.67232 -10.14259 -9.77655 -9.05349 -8.48110 -6.16931 0.36002 0.68555 1.35293 1.35624 1.43154 1.53497 2.14104 2.18413 2.73796 2.82767 2.96055 3.14830 3.28667 3.36523 3.61324 3.73871 3.78798 3.90464 3.99434 4.07220 4.23613 4.28374 4.38214 4.44732 4.46098 4.50752 4.60778 4.65008 4.71038 4.76651 4.83112 4.84085 4.96162 4.99619 5.04182 5.09393 5.10735 5.23244 5.33368 5.60426 5.68588 5.69648 5.84549 6.00437 6.14637 6.49653 6.96646 7.16247 7.76761 8.75227 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002587 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.058244 B =10819.994533 C =11998.321679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.234 4.234 12 C -0.068 4.068 13 C -0.168 4.168 14 C -0.059 4.059 15 C 0.174 3.826 16 N -0.711 5.711 17 C 0.536 3.464 18 O -0.578 6.578 19 C -0.179 4.179 20 H 0.151 0.849 21 C -0.106 4.106 22 C -0.140 4.140 23 C -0.113 4.113 24 C 0.039 3.961 25 O -0.408 6.408 26 C 0.085 3.915 27 C -0.183 4.183 28 H 0.272 0.728 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.412 0.588 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -19.090 -12.785 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.122 0.878 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.253 4.253 12 C -0.086 4.086 13 C -0.186 4.186 14 C -0.059 4.059 15 C 0.051 3.949 16 N -0.362 5.362 17 C 0.324 3.676 18 O -0.459 6.459 19 C -0.200 4.200 20 H 0.168 0.832 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.037 4.037 25 O -0.328 6.328 26 C 0.008 3.992 27 C -0.203 4.203 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.249 0.751 35 H 0.161 0.839 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.107 -19.388 -12.043 23.190 hybrid contribution 0.148 1.502 0.247 1.529 sum 4.254 -17.886 -11.796 21.844 Atomic orbital electron populations 1.70194 1.08101 1.28740 1.48899 1.26598 0.96817 1.02804 0.95883 0.84524 0.78351 0.74825 0.78482 1.17217 1.19390 1.19560 1.21875 0.92566 0.81299 1.53077 0.87825 1.83953 1.36016 1.12629 1.81383 1.19850 0.91683 0.87783 0.94423 1.21384 0.92919 1.00484 1.10544 1.21175 1.00481 0.91065 0.95905 1.20996 0.92922 0.98347 1.06376 1.19433 0.94041 0.92416 1.00050 1.20034 0.99594 0.92794 0.82503 1.45982 1.60521 1.21232 1.08419 1.20148 0.76244 0.80633 0.90581 1.90676 1.52279 1.49100 1.53822 1.22340 1.02550 1.01802 0.93278 0.83155 1.23154 0.96777 0.89807 1.04567 1.22209 0.89123 1.04865 0.97908 1.22691 0.94542 1.02645 0.95090 1.23842 0.96892 1.01697 0.81247 1.88928 1.34860 1.88032 1.20949 1.22423 0.82466 1.00173 0.94147 1.20210 0.99280 0.90311 1.10519 0.91874 0.86100 0.83202 0.83291 0.89307 0.92279 0.75148 0.83930 0.88418 0.89932 0.86560 0.90502 0.87561 0.91626 0.92138 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.33 13.67 21.61 0.30 -56.03 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 3 Si 1.02 42.16 29.55 68.60 2.03 44.19 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.41 -23.53 9.49 67.92 0.64 -22.89 16 8 H 0.10 5.38 5.20 -2.90 -0.02 5.36 16 9 O -0.23 -13.82 9.76 -22.79 -0.22 -14.04 16 10 C 0.11 5.43 6.65 22.58 0.15 5.58 16 11 C -0.23 -9.57 9.17 22.39 0.21 -9.36 16 12 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 13 C -0.17 -4.67 9.70 22.30 0.22 -4.46 16 14 C -0.06 -1.86 5.25 -19.88 -0.10 -1.96 16 15 C 0.17 4.78 5.80 85.63 0.50 5.27 16 16 N -0.71 -17.08 5.55 -466.78 -2.59 -19.67 16 17 C 0.54 13.29 6.93 87.66 0.61 13.90 16 18 O -0.58 -18.27 15.01 -3.03 -0.05 -18.32 16 19 C -0.18 -3.05 6.07 -11.77 -0.07 -3.12 16 20 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 21 C -0.11 -1.42 9.83 30.42 0.30 -1.12 16 22 C -0.14 -2.42 2.42 -52.24 -0.13 -2.55 16 23 C -0.11 -1.42 6.94 31.69 0.22 -1.20 16 24 C 0.04 0.60 7.73 72.73 0.56 1.16 16 25 O -0.41 -10.36 11.53 -148.98 -1.72 -12.08 16 26 C 0.08 2.06 6.67 72.09 0.48 2.54 16 27 C -0.18 -7.57 9.65 22.39 0.22 -7.36 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.09 2.22 8.09 -2.38 -0.02 2.20 16 33 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 34 H 0.41 8.59 8.46 -92.71 -0.78 7.80 16 35 H 0.14 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.10 1.61 7.89 -2.39 -0.02 1.59 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.12 0.75 8.13 -2.39 -0.02 0.73 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.82 6.73 -2.39 -0.02 1.80 16 43 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -76.32 363.76 2.49 -73.83 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.25 Total: 30.44 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.49 Total: -28.32 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -2.29 Total: -75.70 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.99 Total: -44.44 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -76.32 2.49 -73.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645680685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.227 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds