Wall clock time and date at job start Tue Mar 31 2020 12:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50696 * 120.00088 * 2 1 4 4 C 1.33087 * 119.99953 * 179.97438 * 2 1 3 5 5 C 1.46951 * 119.99764 * 2.25137 * 4 2 1 6 6 O 1.21537 * 120.00172 * 354.56276 * 5 4 2 7 7 O 1.34799 * 119.99782 * 174.56551 * 5 4 2 8 8 C 1.45197 * 116.99935 * 179.97438 * 7 5 4 9 9 C 1.50708 * 109.47216 * 179.97438 * 8 7 5 10 10 O 1.21288 * 119.99684 * 1.17451 * 9 8 7 11 11 N 1.34776 * 119.99882 * 181.16707 * 9 8 7 12 12 C 1.46499 * 119.99488 * 184.28384 * 11 9 8 13 13 C 1.50696 * 109.47075 * 269.99802 * 12 11 9 14 14 H 1.08000 * 120.00017 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99852 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00393 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46675 * 90.00305 * 17 15 13 19 19 H 1.48497 * 109.47304 * 210.00297 * 17 15 13 20 20 H 1.48504 * 109.47239 * 330.00721 * 17 15 13 21 21 C 1.39922 * 120.00399 * 4.28050 * 11 9 8 22 22 C 1.38873 * 120.06702 * 67.62964 * 21 11 9 23 23 C 1.38110 * 119.92961 * 179.97438 * 22 21 11 24 24 C 1.38280 * 120.06875 * 359.97438 * 23 22 21 25 25 C 1.38274 * 120.14375 * 0.04670 * 24 23 22 26 26 C 1.38116 * 120.07169 * 359.95646 * 25 24 23 27 27 H 1.08995 * 109.47168 * 239.78182 * 1 2 3 28 28 H 1.09000 * 109.46867 * 359.78305 * 1 2 3 29 29 H 1.08998 * 109.47097 * 119.78263 * 1 2 3 30 30 H 1.09006 * 109.47051 * 269.99952 * 3 2 1 31 31 H 1.08994 * 109.47482 * 29.99661 * 3 2 1 32 32 H 1.08996 * 109.47508 * 150.00158 * 3 2 1 33 33 H 1.07999 * 120.00130 * 182.24835 * 4 2 1 34 34 H 1.09002 * 109.46972 * 60.00456 * 8 7 5 35 35 H 1.08997 * 109.47684 * 299.99843 * 8 7 5 36 36 H 1.08999 * 109.47555 * 30.00467 * 12 11 9 37 37 H 1.09009 * 109.47127 * 149.99975 * 12 11 9 38 38 H 0.96995 * 120.00185 * 179.97438 * 16 15 13 39 39 H 1.08007 * 120.03670 * 359.70148 * 22 21 11 40 40 H 1.08003 * 119.96588 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.92848 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.96430 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.03612 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1526 0.0005 5 6 1.4385 -2.4247 -0.0489 6 8 0.2245 -2.4286 0.0095 7 8 2.1117 -3.5873 -0.1590 8 6 1.3218 -4.8049 -0.2015 9 6 2.2387 -5.9945 -0.3258 10 8 3.4406 -5.8336 -0.3524 11 7 1.7231 -7.2371 -0.4073 12 6 2.6144 -8.3995 -0.4335 13 6 2.9715 -8.7265 -1.8606 14 1 2.5747 -8.1281 -2.6673 15 6 3.8049 -9.7898 -2.1363 16 7 4.2877 -10.5189 -1.1540 17 14 4.2470 -10.1957 -3.9053 18 1 5.4747 -9.4544 -4.2911 19 1 4.4895 -11.6552 -4.0326 20 1 3.1286 -9.7999 -4.7984 21 6 0.3368 -7.4169 -0.4668 22 6 -0.3719 -6.9972 -1.5849 23 6 -1.7402 -7.1766 -1.6408 24 6 -2.4044 -7.7738 -0.5852 25 6 -1.7017 -8.1923 0.5297 26 6 -0.3333 -8.0158 0.5919 27 1 -0.3633 -0.5172 0.8880 28 1 -0.3633 1.0277 0.0039 29 1 -0.3633 -0.5104 -0.8919 30 1 2.4422 1.6197 -1.0277 31 1 1.6715 2.0647 0.5137 32 1 3.2129 1.1748 0.5138 33 1 3.2518 -1.1529 0.0372 34 1 0.6506 -4.7728 -1.0597 35 1 0.7369 -4.8908 0.7142 36 1 3.5223 -8.1740 0.1258 37 1 2.1111 -9.2536 0.0199 38 1 4.8737 -11.2671 -1.3480 39 1 0.1458 -6.5271 -2.4080 40 1 -2.2920 -6.8501 -2.5100 41 1 -3.4745 -7.9126 -0.6312 42 1 -2.2234 -8.6581 1.3527 43 1 0.2150 -8.3433 1.4628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028288542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:29 Heat of formation + Delta-G solvation = -72.694058 kcal Electronic energy + Delta-G solvation = -26045.375533 eV Core-core repulsion = 22249.470468 eV Total energy + Delta-G solvation = -3795.905066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54889 -39.77539 -38.16505 -36.87393 -35.36406 -34.86279 -32.74239 -30.77946 -29.74871 -29.35093 -28.25397 -27.98498 -26.47802 -23.18295 -22.59967 -22.18695 -21.75384 -19.31133 -18.80657 -17.74560 -17.20001 -16.67904 -16.36544 -16.03088 -15.84690 -15.25540 -15.00971 -14.52440 -14.40000 -14.31388 -14.21109 -13.77791 -13.36312 -13.17938 -12.90660 -12.84135 -12.55757 -12.41275 -12.29862 -12.12752 -12.06941 -11.82382 -11.50791 -11.24443 -11.08314 -10.86560 -10.67032 -10.58832 -10.20060 -10.19275 -9.77615 -9.43961 -9.39849 -8.72182 -8.62867 -8.46210 -7.76034 -6.08424 -4.12883 0.98460 1.51145 1.61133 2.54346 2.88547 3.11755 3.30719 3.36365 3.39422 3.77174 3.98561 4.42289 4.49371 4.57169 4.78943 4.97759 5.08871 5.13634 5.15088 5.16248 5.26872 5.29466 5.30444 5.33149 5.39795 5.53778 5.57931 5.64278 5.78313 5.85565 5.97333 6.14874 6.16734 6.22307 6.48045 6.57167 6.69901 6.74008 6.90838 7.15045 7.27852 7.39090 7.79367 7.86877 8.14110 8.21065 8.73734 8.91447 9.51562 11.00085 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.003710 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.271260 B = 7545.125322 C = 9119.504810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.027 4.027 3 C -0.127 4.127 4 C -0.208 4.208 5 C 0.492 3.508 6 O -0.513 6.513 7 O -0.327 6.327 8 C 0.052 3.948 9 C 0.514 3.486 10 O -0.502 6.502 11 N -0.556 5.556 12 C 0.250 3.750 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.155 3.845 22 C -0.126 4.126 23 C -0.108 4.108 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.123 4.123 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 17.073 3.514 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.027 4.027 3 C -0.183 4.183 4 C -0.227 4.227 5 C 0.339 3.661 6 O -0.405 6.405 7 O -0.243 6.243 8 C -0.026 4.026 9 C 0.300 3.700 10 O -0.376 6.376 11 N -0.286 5.286 12 C 0.133 3.867 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.727 3.273 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.063 3.937 22 C -0.145 4.145 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.127 4.127 26 C -0.142 4.142 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.297 16.946 3.563 20.675 hybrid contribution 0.204 -0.634 -1.054 1.247 sum -11.093 16.312 2.508 19.885 Atomic orbital electron populations 1.21152 0.90654 1.01643 1.04500 1.22692 0.97004 0.94442 0.88593 1.21031 1.00281 0.93687 1.03286 1.21719 1.00923 0.88532 1.11480 1.21566 0.86240 0.85053 0.73254 1.90833 1.14979 1.88046 1.46643 1.86645 1.40189 1.14127 1.83295 1.22860 0.93331 0.81871 1.04491 1.19777 0.88768 0.83271 0.78219 1.90736 1.14857 1.84491 1.47522 1.45885 1.04177 1.07419 1.71145 1.19488 0.88720 0.80179 0.98283 1.21349 1.29458 1.13624 0.92081 0.92308 1.24907 0.95507 0.95840 0.97683 1.69924 1.33060 1.19025 1.31300 0.86467 0.78960 0.77389 0.84459 1.20447 1.21080 1.19867 1.17785 0.83790 0.98644 0.93517 1.21383 0.94533 1.01756 0.96854 1.20977 0.93798 0.99240 0.98627 1.21082 0.99692 0.99941 0.94263 1.20982 0.93649 0.99816 0.98295 1.21319 0.94437 1.00298 0.98184 0.89560 0.92435 0.89844 0.89879 0.90709 0.90663 0.84158 0.88516 0.88661 0.93345 0.94317 0.92612 0.85888 0.86008 0.86260 0.85957 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.33 36.01 0.30 -0.84 16 2 C -0.03 -0.24 6.12 -101.14 -0.62 -0.86 16 3 C -0.13 -0.74 9.98 36.00 0.36 -0.39 16 4 C -0.21 -2.39 9.75 -37.85 -0.37 -2.76 16 5 C 0.49 7.37 7.87 34.26 0.27 7.64 16 6 O -0.51 -8.05 12.89 -19.29 -0.25 -8.29 16 7 O -0.33 -5.78 9.77 -47.44 -0.46 -6.25 16 8 C 0.05 0.91 4.74 36.01 0.17 1.08 16 9 C 0.51 11.19 7.63 -10.98 -0.08 11.11 16 10 O -0.50 -13.00 16.12 -14.11 -0.23 -13.23 16 11 N -0.56 -12.15 2.51 -114.73 -0.29 -12.44 16 12 C 0.25 6.56 5.08 -5.20 -0.03 6.53 16 13 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 17 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.15 2.84 4.47 -83.70 -0.37 2.46 16 22 C -0.13 -2.07 8.34 -39.39 -0.33 -2.40 16 23 C -0.11 -1.46 10.04 -39.61 -0.40 -1.86 16 24 C -0.13 -1.64 10.04 -39.55 -0.40 -2.04 16 25 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 26 C -0.12 -1.97 9.68 -39.39 -0.38 -2.35 16 27 H 0.09 0.91 7.20 -51.93 -0.37 0.53 16 28 H 0.06 0.39 7.94 -51.93 -0.41 -0.02 16 29 H 0.08 0.89 7.25 -51.93 -0.38 0.51 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.34 8.05 -51.93 -0.42 -0.07 16 32 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.14 1.43 8.05 -52.49 -0.42 1.00 16 34 H 0.10 1.57 6.66 -51.93 -0.35 1.22 16 35 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.05 1.40 7.48 -51.93 -0.39 1.01 16 37 H 0.04 1.03 7.85 -51.92 -0.41 0.62 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 2.03 7.92 -52.48 -0.42 1.62 16 40 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -34.00 373.48 -8.64 -42.64 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.06 Total: 0.83 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.69 Total: -0.14 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.45 Total: -38.20 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.94 Total: -27.77 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.00 -8.64 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028288542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.051 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds