Wall clock time and date at job start Tue Mar 31 2020 11:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46940 * 2 1 4 4 C 1.50703 * 109.46737 * 179.97438 * 3 2 1 5 5 C 1.33085 * 119.99686 * 174.85751 * 4 3 2 6 6 C 1.46949 * 120.00260 * 5.26756 * 5 4 3 7 7 O 1.21538 * 119.99834 * 5.52141 * 6 5 4 8 8 O 1.34801 * 120.00119 * 185.52105 * 6 5 4 9 9 C 1.45196 * 116.99752 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.46820 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00448 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00079 * 180.02562 * 10 9 8 13 13 C 1.39235 * 120.00307 * 176.04096 * 12 10 9 14 14 C 1.39484 * 119.83409 * 215.14852 * 13 12 10 15 15 C 1.36376 * 120.16780 * 179.75759 * 14 13 12 16 16 C 1.40862 * 119.82787 * 0.50919 * 15 14 13 17 17 C 1.41155 * 120.16343 * 179.71951 * 16 15 14 18 18 H 1.08003 * 120.00367 * 213.95915 * 17 16 15 19 19 C 1.39908 * 120.00095 * 33.95865 * 17 16 15 20 20 N 1.30879 * 119.99688 * 5.77918 * 19 17 16 21 21 Si 1.86791 * 120.00218 * 185.77613 * 19 17 16 22 22 H 1.48497 * 109.47253 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47419 * 120.00327 * 21 19 17 24 24 H 1.48508 * 109.47261 * 239.99977 * 21 19 17 25 25 C 1.40872 * 119.67501 * 359.74237 * 16 15 14 26 26 C 1.36370 * 119.82507 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47222 * 300.00519 * 1 2 3 29 29 H 1.09006 * 109.46356 * 60.00735 * 1 2 3 30 30 H 1.08997 * 109.47222 * 239.99480 * 2 1 3 31 31 H 1.09006 * 109.46356 * 119.99264 * 2 1 3 32 32 H 1.08997 * 109.47587 * 59.99704 * 3 2 1 33 33 H 1.08998 * 109.47199 * 299.99147 * 3 2 1 34 34 H 1.07998 * 120.00354 * 354.58457 * 4 3 2 35 35 H 1.08002 * 119.99589 * 185.27218 * 5 4 3 36 36 H 1.09000 * 109.47723 * 300.00280 * 9 8 6 37 37 H 1.08997 * 109.47206 * 60.00404 * 9 8 6 38 38 H 0.97003 * 119.99522 * 356.03489 * 12 10 9 39 39 H 1.07997 * 119.91263 * 0.02562 * 14 13 12 40 40 H 1.08000 * 120.08231 * 180.24960 * 15 14 13 41 41 H 0.97001 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.08318 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.91075 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2125 2.5903 -0.1026 6 6 3.4824 3.8657 -0.1005 7 8 2.2831 3.8790 0.0958 8 8 4.1429 5.0208 -0.3164 9 6 3.3576 6.2419 -0.3009 10 6 4.2587 7.4219 -0.5593 11 8 5.4459 7.2506 -0.7384 12 7 3.7454 8.6677 -0.5903 13 6 4.5888 9.7645 -0.7467 14 6 4.2969 10.9628 -0.0951 15 6 5.1210 12.0398 -0.2395 16 6 6.2634 11.9431 -1.0579 17 6 7.1180 13.0552 -1.2171 18 1 7.6184 13.2212 -2.1597 19 6 7.3167 13.9427 -0.1539 20 7 6.8021 13.6820 1.0209 21 14 8.3164 15.4994 -0.4111 22 1 8.7839 15.5606 -1.8192 23 1 7.4709 16.6847 -0.1189 24 1 9.4889 15.4911 0.5003 25 6 6.5487 10.7312 -1.7169 26 6 5.7179 9.6613 -1.5590 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 4.0870 0.5113 0.0893 35 1 5.2891 2.5845 -0.1879 36 1 2.5931 6.1923 -1.0763 37 1 2.8807 6.3548 0.6727 38 1 2.7884 8.8002 -0.5037 39 1 3.4185 11.0365 0.5288 40 1 4.8958 12.9657 0.2688 41 1 6.9402 14.2971 1.7581 42 1 7.4226 10.6499 -2.3462 43 1 5.9351 8.7317 -2.0640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051418971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:49 Heat of formation + Delta-G solvation = -90.914745 kcal Electronic energy + Delta-G solvation = -24543.444392 eV Core-core repulsion = 20746.749218 eV Total energy + Delta-G solvation = -3796.695174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.69961 -39.57619 -37.52452 -36.87787 -35.67924 -34.47019 -33.00558 -32.85616 -29.92411 -29.54602 -28.38200 -27.22034 -24.85955 -23.37112 -21.81266 -21.66056 -20.84642 -20.01035 -19.63655 -17.91875 -17.41680 -17.15010 -16.74295 -16.11441 -15.83235 -15.58315 -15.18967 -14.76620 -14.61640 -14.10319 -13.93165 -13.49827 -13.40487 -13.00828 -12.93906 -12.68151 -12.56094 -12.49821 -12.12791 -11.81596 -11.78235 -11.42518 -11.28802 -11.19769 -11.16750 -11.03468 -10.82325 -10.76340 -10.36903 -10.01453 -9.79235 -9.53514 -9.46017 -9.19072 -8.93549 -7.58551 -6.93734 -6.68681 -4.35323 0.86179 2.31010 2.48410 2.71927 2.95512 3.05276 3.09069 3.14408 3.27430 3.70136 3.96171 4.32097 4.53365 4.65475 4.68929 4.69243 4.86762 4.99136 5.03453 5.06467 5.09300 5.35346 5.37448 5.53299 5.63088 5.70337 5.83753 5.88177 5.90169 6.02118 6.15230 6.29188 6.40171 6.68390 6.87019 7.02905 7.15277 7.25133 7.55531 7.58636 7.67193 7.81872 8.02412 8.17755 8.26712 8.56260 8.65632 8.88705 8.95560 10.26059 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.047319 B = 0.001833 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.584651 B =15269.755845 C =15504.176213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.048 4.048 5 C -0.201 4.201 6 C 0.491 3.509 7 O -0.511 6.511 8 O -0.326 6.326 9 C 0.053 3.947 10 C 0.498 3.502 11 O -0.509 6.509 12 N -0.645 5.645 13 C -0.001 4.001 14 C -0.116 4.116 15 C -0.140 4.140 16 C 0.106 3.894 17 C -0.462 4.462 18 H 0.078 0.922 19 C 0.071 3.929 20 N -0.807 5.807 21 Si 0.913 3.087 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.207 4.207 26 C -0.081 4.081 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.397 0.603 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.279 0.721 42 H 0.097 0.903 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.462 -20.252 -0.235 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.139 4.139 4 C -0.067 4.067 5 C -0.220 4.220 6 C 0.338 3.662 7 O -0.403 6.403 8 O -0.241 6.241 9 C -0.024 4.024 10 C 0.283 3.717 11 O -0.383 6.383 12 N -0.290 5.290 13 C -0.093 4.093 14 C -0.136 4.136 15 C -0.160 4.160 16 C 0.104 3.896 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.145 4.145 20 N -0.434 5.434 21 Si 0.738 3.262 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.227 4.227 26 C -0.101 4.101 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.231 0.769 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.953 -20.255 -0.060 22.569 hybrid contribution -0.056 0.842 0.216 0.872 sum -10.009 -19.413 0.156 21.842 Atomic orbital electron populations 1.21755 0.95608 1.01507 1.02151 1.21659 0.96388 0.96600 1.01960 1.21086 0.91386 0.96842 1.04561 1.24016 0.97067 0.97181 0.88407 1.21972 1.01302 0.88920 1.09807 1.21698 0.85948 0.85138 0.73385 1.90842 1.15698 1.87885 1.45839 1.86670 1.41132 1.14353 1.81967 1.22691 0.93393 0.81933 1.04427 1.19958 0.88806 0.83796 0.79158 1.90739 1.15712 1.84701 1.47174 1.42774 1.09956 1.04530 1.71760 1.17185 0.97720 0.87045 1.07385 1.20260 1.00170 0.93389 0.99772 1.20925 0.94234 0.97846 1.03027 1.17717 0.90568 0.91534 0.89811 1.19559 1.24102 1.06664 0.98935 0.90402 1.25886 0.95271 0.98747 0.94565 1.69800 1.37346 1.35114 1.01146 0.86182 0.79582 0.80838 0.79602 1.18518 1.19895 1.20018 1.20786 1.00798 0.93202 1.07926 1.20404 0.94556 0.98075 0.97087 0.92807 0.92575 0.92626 0.91970 0.91913 0.88689 0.89497 0.84558 0.83915 0.88454 0.88304 0.76882 0.88959 0.86021 0.91067 0.88472 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.13 -0.75 5.88 -26.73 -0.16 -0.91 16 3 C -0.10 -0.79 3.79 -27.88 -0.11 -0.90 16 4 C -0.05 -0.34 9.65 -36.10 -0.35 -0.69 16 5 C -0.20 -1.85 10.15 -37.85 -0.38 -2.23 16 6 C 0.49 6.08 7.84 34.26 0.27 6.35 16 7 O -0.51 -6.71 12.98 -19.29 -0.25 -6.96 16 8 O -0.33 -4.75 9.77 -47.45 -0.46 -5.21 16 9 C 0.05 0.70 5.96 36.00 0.21 0.92 16 10 C 0.50 8.74 7.74 -10.98 -0.08 8.65 16 11 O -0.51 -11.27 13.94 -14.11 -0.20 -11.47 16 12 N -0.65 -11.08 5.30 -9.74 -0.05 -11.13 16 13 C 0.00 -0.03 6.30 -83.57 -0.53 -0.56 16 14 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 15 C -0.14 -3.57 8.57 -39.26 -0.34 -3.90 16 16 C 0.11 2.84 5.51 -106.80 -0.59 2.25 16 17 C -0.46 -12.28 9.03 -37.85 -0.34 -12.62 16 18 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 19 C 0.07 1.79 5.31 -17.33 -0.09 1.70 16 20 N -0.81 -21.01 10.94 55.55 0.61 -20.40 16 21 Si 0.91 18.84 29.56 -169.99 -5.03 13.82 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.21 -5.24 9.74 -39.26 -0.38 -5.63 16 26 C -0.08 -1.95 8.61 -39.79 -0.34 -2.29 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.87 7.11 -51.93 -0.37 0.51 16 33 H 0.09 0.79 7.39 -51.93 -0.38 0.41 16 34 H 0.14 0.57 7.99 -52.49 -0.42 0.15 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.40 5.12 8.82 -40.82 -0.36 4.76 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.12 3.18 6.44 -52.49 -0.34 2.84 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 42 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 43 H 0.11 2.54 6.25 -52.48 -0.33 2.21 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -31.90 368.97 -9.02 -40.92 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.97 Total: 8.26 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.23 Total: -13.39 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.56 Total: -31.53 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.91 Total: -23.64 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.90 -9.02 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051418971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.991 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds